Ggra9491.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9491.t1
Unique NameGgra9491.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:173545..174278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX37817
Preferred nameLHCQ
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08914,ko:K14172
KEGG Pathwayko00196,ko01100,map00196,map01100
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
Evalue4.77e-64
EggNOG OGs2CMFR@1|root,2QQ8A@2759|Eukaryota
DescriptionThe light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9491Ggra9491Gracilaria gracilis GNS1m malegenetig00000873_pilon 173545..174278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9491.t1Ggra9491.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 173545..174278 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9491.t1.start1Ggra9491.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 173545..173547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9491.t1.CDS1Ggra9491.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 173545..173788 +
Ggra9491.t1.CDS2Ggra9491.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 173881..174278 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9491.t1.exon1Ggra9491.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 173545..173788 +
Ggra9491.t1.exon2Ggra9491.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 173881..174278 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9491.t1.intron1Ggra9491.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 173789..173880 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9491.t1.stop1Ggra9491.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 174276..174278 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9491.t1 ID=Ggra9491.t1|Name=Ggra9491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MVAFITPVVTGFSTALRGQAVCGSPRVSRSAVSMKISPAMPFMEQPTTLD
DDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQF
PWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPG
YFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLD
QLTHFQALPGHLY*
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spliced messenger RNA

>Ggra9491.t1 ID=Ggra9491.t1|Name=Ggra9491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000873_pilon:173545..174278+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCGTTCATTACTCCCGTTGTCACTGGCTTCTCCACAGCGCTGCG
CGGTCAGGCAGTATGTGGCTCGCCACGCGTCTCCCGCTCGGCGGTGTCCA
TGAAGATTTCGCCCGCTATGCCCTTCATGGAGCAGCCCACCACACTTGAC
GACGACTCCATTATTGGCAACGTTGGCTTTGACCCGCTCAACCTCTCCCA
GGTGTTCAACTTCAAGTTCATGCAAGAAGCTGAAATCAAGCATTGCCGCG
TTGCTATGCTTGGCGTGCTTGGATACATCATCCCCGAGGTATTCCAGTTC
CCGTGGGGCAAGTCACTCAACCCAATCGAGGCGCATGACTTCTTCGTGAA
GACCGGCGGTATGTCGCAGCTGCTTCTGTTTTTGGGTTTCCTGGAAATCT
TCGGCGCTATCGCGCTCAAGGAAACTCTTGAAGGCGACCGCGCACCGGGA
TACTTCGGTTTTGACCCACTTGGTCTGGGCAAGGATCCGGAAAAGTTCAA
GAAGTACCACTTGTCGGAGATCAAGAACGGCCGATTGGCAATGTGCGCGT
TCGGTGGTCTGTATCATGCTACCTTGCTCACCAAGCAGGGTACTTTGGAC
CAACTCACTCACTTCCAGGCGCTCCCTGGTCATCTGTACTGA
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protein sequence of Ggra9491.t1

>Ggra9491.t1 ID=Ggra9491.t1|Name=Ggra9491.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MVAFITPVVTGFSTALRGQAVCGSPRVSRSAVSMKISPAMPFMEQPTTLD
DDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQF
PWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPG
YFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLD
QLTHFQALPGHLY*
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mRNA from alignment at tig00000873_pilon:173545..174278+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9491.t1 ID=Ggra9491.t1|Name=Ggra9491.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=734bp|location=Sequence derived from alignment at tig00000873_pilon:173545..174278+ (Gracilaria gracilis GNS1m male)
ATGGTTGCGTTCATTACTCCCGTTGTCACTGGCTTCTCCACAGCGCTGCG
CGGTCAGGCAGTATGTGGCTCGCCACGCGTCTCCCGCTCGGCGGTGTCCA
TGAAGATTTCGCCCGCTATGCCCTTCATGGAGCAGCCCACCACACTTGAC
GACGACTCCATTATTGGCAACGTTGGCTTTGACCCGCTCAACCTCTCCCA
GGTGTTCAACTTCAAGTTCATGCAAGAAGCTGAAATCAAGCATTGTACGT
ACATTACTCACATGCTACCATCTTCATGTCGCTGTGTCTCATACTGACTT
TTACGCGCTCCCCCTTTTGCTATCGTTCGTTTGTAGGCCGCGTTGCTATG
CTTGGCGTGCTTGGATACATCATCCCCGAGGTATTCCAGTTCCCGTGGGG
CAAGTCACTCAACCCAATCGAGGCGCATGACTTCTTCGTGAAGACCGGCG
GTATGTCGCAGCTGCTTCTGTTTTTGGGTTTCCTGGAAATCTTCGGCGCT
ATCGCGCTCAAGGAAACTCTTGAAGGCGACCGCGCACCGGGATACTTCGG
TTTTGACCCACTTGGTCTGGGCAAGGATCCGGAAAAGTTCAAGAAGTACC
ACTTGTCGGAGATCAAGAACGGCCGATTGGCAATGTGCGCGTTCGGTGGT
CTGTATCATGCTACCTTGCTCACCAAGCAGGGTACTTTGGACCAACTCAC
TCACTTCCAGGCGCTCCCTGGTCATCTGTACTGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:173545..174278+

>Ggra9491.t1 ID=Ggra9491.t1|Name=Ggra9491.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000873_pilon:173545..174278+ (Gracilaria gracilis GNS1m male)
ATGGTTGCGTTCATTACTCCCGTTGTCACTGGCTTCTCCACAGCGCTGCG
CGGTCAGGCAGTATGTGGCTCGCCACGCGTCTCCCGCTCGGCGGTGTCCA
TGAAGATTTCGCCCGCTATGCCCTTCATGGAGCAGCCCACCACACTTGAC
GACGACTCCATTATTGGCAACGTTGGCTTTGACCCGCTCAACCTCTCCCA
GGTGTTCAACTTCAAGTTCATGCAAGAAGCTGAAATCAAGCATTGCCGCG
TTGCTATGCTTGGCGTGCTTGGATACATCATCCCCGAGGTATTCCAGTTC
CCGTGGGGCAAGTCACTCAACCCAATCGAGGCGCATGACTTCTTCGTGAA
GACCGGCGGTATGTCGCAGCTGCTTCTGTTTTTGGGTTTCCTGGAAATCT
TCGGCGCTATCGCGCTCAAGGAAACTCTTGAAGGCGACCGCGCACCGGGA
TACTTCGGTTTTGACCCACTTGGTCTGGGCAAGGATCCGGAAAAGTTCAA
GAAGTACCACTTGTCGGAGATCAAGAACGGCCGATTGGCAATGTGCGCGT
TCGGTGGTCTGTATCATGCTACCTTGCTCACCAAGCAGGGTACTTTGGAC
CAACTCACTCACTTCCAGGCGCTCCCTGGTCATCTGTACTGA
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