Ggra9497.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9497.t1
Unique NameGgra9497.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length133
Homology
BLAST of Ggra9497.t1 vs. uniprot
Match: A0A2V3J6V1 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V1_9FLOR)

HSP 1 Score: 140 bits (352), Expect = 2.150e-40
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDERA 84
            MLPLSLLKSATGCPILIELKNGETYNAKL +MDLWMN++L DA+RTS DG  FW++P + IRGNTIKYIRVPELVL I+++ERA
Sbjct:    1 MLPLSLLKSATGCPILIELKNGETYNAKLHSMDLWMNMSLTDAVRTSRDGNDFWHVPQLYIRGNTIKYIRVPELVLGIVEEERA 84          
BLAST of Ggra9497.t1 vs. uniprot
Match: R7QMG7 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMG7_CHOCR)

HSP 1 Score: 115 bits (287), Expect = 1.790e-30
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDER 83
            MLPLSLLKS+TG PIL+ELKNG+TYN  L N+D WMN+ L D IRTS DG  FW++P + IRGNTIKY+RVP+ VL  + DE+
Sbjct:    1 MLPLSLLKSSTGYPILVELKNGDTYNGHLSNIDQWMNVNLNDVIRTSKDGDHFWSVPEMYIRGNTIKYLRVPDAVLDAVADEK 83          
BLAST of Ggra9497.t1 vs. uniprot
Match: R7QHR4 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHR4_CHOCR)

HSP 1 Score: 115 bits (287), Expect = 8.400e-30
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDER 83
            MLPLSLLKS+TG PIL+ELKNG+TYN  L N+D WMN+ L D IRTS DG  FW++P + IRGNTIKY+RVP+ VL  + DE+
Sbjct:   77 MLPLSLLKSSTGYPILVELKNGDTYNGHLSNIDQWMNVNLNDVIRTSKDGDHFWSVPEMYIRGNTIKYLRVPDAVLDAVADEK 159          
BLAST of Ggra9497.t1 vs. uniprot
Match: A0A1X6P2E3 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P2E3_PORUM)

HSP 1 Score: 110 bits (274), Expect = 1.210e-27
Identity = 48/84 (57.14%), Postives = 69/84 (82.14%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDERA 84
            MLPL+LL+S+TG P+L+ELKNG+TY+  L ++D WMNL L DA+RTS++G +FW++P V IRGNT+KY+R PE ++ I+ +E A
Sbjct:    1 MLPLTLLRSSTGHPVLVELKNGDTYSGVLVSIDSWMNLNLADAVRTSAEGDSFWSVPKVYIRGNTVKYVRAPEEIVDIVAEEAA 84          
BLAST of Ggra9497.t1 vs. uniprot
Match: W7TE23 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TE23_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.510e-26
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDE 82
            MLPLSLLK+A G P+L+ELKNG+TYN +L + D WMN+TL D I TS DG  FW IP   +RGN+IKY+RVPE V+ ++++E
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDGDRFWKIPECYVRGNSIKYLRVPEEVIDMVNEE 82          
BLAST of Ggra9497.t1 vs. uniprot
Match: sm-like protein LSM4 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB93CDA (sm-like protein LSM4 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB93CDA)

HSP 1 Score: 103 bits (258), Expect = 6.020e-26
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDERA 84
            MLPLSLLK+A G P+L+ELKNGETYN  L N D WMN+ L + I TS DG  FW +P   IRGNTIKY+RVP+ V+  + DE++
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQDEKS 84          
BLAST of Ggra9497.t1 vs. uniprot
Match: A0A024GT20 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GT20_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.840e-26
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDE 82
            MLPLSLL++A G P+L+ELKNG+TYN   +N D WMN+ L D I TS DG  FW +P   IRGNT+KY+RVP  +L ++ +E
Sbjct:    1 MLPLSLLRAAQGHPMLVELKNGDTYNGHFKNCDTWMNINLCDVICTSKDGDRFWKMPECYIRGNTVKYVRVPNEILGLVQEE 82          
BLAST of Ggra9497.t1 vs. uniprot
Match: A0A7S3VUA5 (U6 snRNA-associated Sm-like protein LSm4 (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3VUA5_9SPIT)

HSP 1 Score: 102 bits (255), Expect = 8.710e-26
Identity = 47/82 (57.32%), Postives = 63/82 (76.83%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDE 82
            MLPLSLL++ATG P+L+ELKNGET+N  L   D WMN++L + I TS DG  FW +P V+IRGN IKY+R+PE V+ ++ +E
Sbjct:   13 MLPLSLLRTATGNPMLVELKNGETFNGTLVGCDTWMNISLKEVICTSRDGDRFWRLPEVIIRGNNIKYLRIPEEVIDMVPEE 94          
BLAST of Ggra9497.t1 vs. uniprot
Match: A0A6A3LNI3 (U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNI3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.380e-25
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDE 82
            MLPLSLLK+A G P+L+ELKNG+TYN  L N D WMN+ L + I TS DG  FW +P   IRGNTIKYIRVP  +L ++++E
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDGDRFWKMPECYIRGNTIKYIRVPNEILDMVNEE 82          
BLAST of Ggra9497.t1 vs. uniprot
Match: A0A2T8IN23 (U6 snRNA-associated Sm-like protein LSm4 n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2T8IN23_9POAL)

HSP 1 Score: 101 bits (251), Expect = 1.730e-25
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 0
Query:    1 MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDGATFWNIPSVLIRGNTIKYIRVPELVLSILDDERA 84
            MLPLSLLK+A G P+L+ELKNGETYN  L N D WMN+ L + I TS DG  FW +P   IRGNTIKY+RVP+ V+  + +E +
Sbjct:    1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEVIDKVQEETS 84          
The following BLAST results are available for this feature:
BLAST of Ggra9497.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6V12.150e-4078.57U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=G... [more]
R7QMG71.790e-3065.06U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=C... [more]
R7QHR48.400e-3065.06U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=C... [more]
A0A1X6P2E31.210e-2757.14U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
W7TE231.510e-2659.76U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=N... [more]
sm-like protein LSM4 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB93CDA6.020e-2659.52sm-like protein LSM4 n=1 Tax=Erigeron canadensis T... [more]
A0A024GT207.840e-2656.10U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=A... [more]
A0A7S3VUA58.710e-2657.32U6 snRNA-associated Sm-like protein LSm4 (Fragment... [more]
A0A6A3LNI31.380e-2559.76U6 snRNA-associated Sm-like protein LSm4 n=1 Tax=P... [more]
A0A2T8IN231.730e-2558.33U6 snRNA-associated Sm-like protein LSm4 n=4 Tax=M... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..71
e-value: 3.2E-13
score: 59.9
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 6..70
e-value: 1.7E-13
score: 50.1
NoneNo IPR availableGENE3D2.30.30.100coord: 1..73
e-value: 1.0E-23
score: 84.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..132
NoneNo IPR availablePANTHERPTHR23338:SF16U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4coord: 1..125
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..125
IPR034101Sm-like protein Lsm4CDDcd01723LSm4coord: 2..77
e-value: 6.53218E-36
score: 116.521
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 3..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:290495..290893 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9497.t1Ggra9497.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 290495..290893 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9497.t1 ID=Ggra9497.t1|Name=Ggra9497.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=133bp
MLPLSLLKSATGCPILIELKNGETYNAKLRNMDLWMNLTLVDAIRTSSDG
ATFWNIPSVLIRGNTIKYIRVPELVLSILDDERAARQQAQQRSRTRRSGG
GRSRSSGGRKGGGGGGGSRSGSSGRRSEPQWL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034101Lsm4
IPR010920LSM_dom_sf