Ggra8252.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8252.t1
Unique NameGgra8252.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000872_piloncontigtig00000872_pilon:253888..255483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703329.1
Preferred nameCACTIN
PFAMsCactinC_cactus,Cactin_mid
Max annot lvl2759|Eukaryota
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000578,GO:0001654,GO:0001817,GO:0001818,GO:0001932,GO:0001933,GO:0001959,GO:0001960,GO:0002237,GO:0002682,GO:0002683,GO:0002831,GO:0002832,GO:0003002,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007548,GO:0008150,GO:0008152,GO:0008380,GO:0008406,GO:0008595,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009880,GO:0009889,GO:0009892,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010563,GO:0010564,GO:0010605,GO:0010646,GO:0010648,GO:0010971,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030111,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031326,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031664,GO:0031665,GO:0031974,GO:0031981,GO:0032088,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032479,GO:0032480,GO:0032496,GO:0032501,GO:0032502,GO:0032648,GO:0032677,GO:0032680,GO:0032688,GO:0032717,GO:0032720,GO:0032879,GO:0032991,GO:0033993,GO:0034097,GO:0034121,GO:0034122,GO:0034612,GO:0034641,GO:0035282,GO:0040012,GO:0040017,GO:0040019,GO:0042221,GO:0042325,GO:0042326,GO:0043010,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043433,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045137,GO:0045595,GO:0045787,GO:0045824,GO:0045931,GO:0045936,GO:0045995,GO:0046483,GO:0048316,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051094,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051259,GO:0051260,GO:0051270,GO:0051272,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060041,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070555,GO:0070887,GO:0071013,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071356,GO:0071396,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902749,GO:1902751,GO:1903506,GO:1903555,GO:1903556,GO:1990904,GO:2000026,GO:2000112,GO:2000145,GO:2000147,GO:2001141
Evalue1.82e-73
EggNOG OGsKOG2370@1|root,KOG2370@2759|Eukaryota
Descriptionnegative regulation of type I interferon-mediated signaling pathway
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8252Ggra8252Gracilaria gracilis GNS1m malegenetig00000872_pilon 253888..255483 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8252.t1.stop1Ggra8252.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000872_pilon 253888..253890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8252.t1.CDS1Ggra8252.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000872_pilon 253888..255483 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8252.t1.exon1Ggra8252.t1.exon1Gracilaria gracilis GNS1m maleexontig00000872_pilon 253888..255483 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8252.t1.start1Ggra8252.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000872_pilon 255481..255483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8252.t1Ggra8252.t1Gracilaria gracilis GNS1m malepolypeptidetig00000872_pilon 253888..255483 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8252.t1 ID=Ggra8252.t1|Name=Ggra8252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MSVSSRGKRSLCSQFACLGVWTMAQRIPVYDKTGDRRRRTDEHHRTEEHR
RHREEDSRREPDTSDTQQPFAKRQKLSSGDREAPFVWRKKVETLRKQGID
PEQEEERQREERRHELAAAKRRREQREQERAEWEAEQIQSAREKEAQMNE
GWHQQEASFHGKQHFLRQSIRIREKRPVGTDLLAEFVRLDLSSDVTILNM
DKFLKGLGEQHVKQLVDGVEDELDYVVDFNREEDNDVWNRTIRLEFWKCV
RVCVRDRLEQTSAGEDGIPDAVATDVELLLQGKSISKLREMETEIDMKLK
NGDGGDGAFGEVDFWQAALARIRVRVATVRLKEITEMLSVERRDRESKQP
KQGKNTESKSETKHKRQSVGEDERLQTEGLTHLPGEDDEEEFKDEVDAPE
RSSGSYAWNDKYRPRKPKYFNKVLSGYRWTKYNRTHYDHDNPPPKTVQGY
MFNIFYPDLMDPSKTPTYTISKTDNTEVVIITFHAGPPYQDMAFKIVNRP
WVTSHRRGYRCSFDKGVLQLWFNFDRYYYRR*
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spliced messenger RNA

>Ggra8252.t1 ID=Ggra8252.t1|Name=Ggra8252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000872_pilon:253888..255483- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTATCTTCAAGGGGTAAACGGTCGCTGTGCTCACAGTTTGCTTG
TCTGGGCGTCTGGACGATGGCTCAAAGAATCCCGGTGTACGACAAAACTG
GCGACAGGCGAAGACGAACCGACGAGCACCATCGAACGGAAGAACATCGT
CGCCATCGAGAAGAAGATTCACGACGCGAACCAGACACCAGCGACACACA
GCAGCCTTTTGCAAAACGCCAGAAGCTGTCGAGCGGCGACCGCGAAGCAC
CGTTTGTATGGCGGAAGAAGGTCGAGACCCTTCGTAAACAGGGAATTGAC
CCCGAACAGGAAGAAGAGCGGCAGCGAGAAGAACGGCGACACGAACTCGC
CGCAGCGAAGAGAAGGAGGGAGCAACGAGAGCAAGAACGAGCAGAATGGG
AAGCAGAGCAAATTCAGAGCGCCAGAGAAAAGGAGGCGCAGATGAACGAA
GGATGGCACCAACAGGAAGCTTCTTTTCATGGAAAGCAGCACTTTCTGCG
CCAGTCTATTCGAATACGCGAGAAACGCCCTGTGGGCACTGATTTGCTCG
CAGAGTTTGTACGACTTGATTTGTCCAGTGATGTGACCATATTGAACATG
GATAAATTTTTGAAAGGTTTGGGTGAACAACATGTGAAGCAATTAGTGGA
TGGGGTGGAGGATGAACTCGACTACGTTGTGGACTTCAACAGAGAAGAAG
ACAATGATGTGTGGAACCGTACCATACGGCTTGAGTTCTGGAAATGCGTG
AGAGTTTGCGTTAGGGATCGACTAGAACAAACAAGCGCTGGTGAAGACGG
TATCCCCGACGCAGTGGCCACAGACGTGGAACTGTTGTTGCAGGGCAAGT
CAATTTCGAAGTTACGTGAAATGGAGACAGAAATTGACATGAAGCTCAAG
AACGGGGATGGAGGGGATGGAGCTTTTGGGGAGGTTGATTTCTGGCAGGC
TGCGTTGGCAAGAATTCGTGTTCGCGTTGCCACGGTGAGACTAAAGGAAA
TAACTGAGATGCTTTCGGTTGAACGTAGAGACAGAGAGTCCAAGCAGCCG
AAGCAAGGGAAGAACACCGAATCAAAGAGCGAAACAAAACATAAAAGGCA
ATCTGTTGGAGAGGATGAACGATTGCAAACAGAGGGACTGACCCACTTAC
CAGGAGAAGACGACGAGGAAGAATTCAAGGACGAGGTGGATGCTCCGGAA
CGAAGTAGTGGGAGCTATGCATGGAATGACAAGTACCGACCAAGGAAACC
GAAATACTTCAATAAGGTTCTAAGCGGTTATCGATGGACCAAGTACAATC
GTACCCACTACGATCATGACAATCCGCCTCCGAAAACAGTTCAAGGATAC
ATGTTTAATATTTTCTATCCAGATCTAATGGACCCGTCGAAGACACCAAC
GTACACAATAAGCAAAACTGATAATACAGAGGTTGTGATTATTACATTTC
ATGCAGGGCCACCGTATCAAGACATGGCGTTCAAGATAGTGAATCGACCA
TGGGTGACATCGCATCGAAGGGGTTATCGGTGTTCATTTGATAAGGGCGT
GTTACAACTGTGGTTTAACTTTGACAGGTACTATTATCGACGGTAA
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protein sequence of Ggra8252.t1

>Ggra8252.t1 ID=Ggra8252.t1|Name=Ggra8252.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MSVSSRGKRSLCSQFACLGVWTMAQRIPVYDKTGDRRRRTDEHHRTEEHR
RHREEDSRREPDTSDTQQPFAKRQKLSSGDREAPFVWRKKVETLRKQGID
PEQEEERQREERRHELAAAKRRREQREQERAEWEAEQIQSAREKEAQMNE
GWHQQEASFHGKQHFLRQSIRIREKRPVGTDLLAEFVRLDLSSDVTILNM
DKFLKGLGEQHVKQLVDGVEDELDYVVDFNREEDNDVWNRTIRLEFWKCV
RVCVRDRLEQTSAGEDGIPDAVATDVELLLQGKSISKLREMETEIDMKLK
NGDGGDGAFGEVDFWQAALARIRVRVATVRLKEITEMLSVERRDRESKQP
KQGKNTESKSETKHKRQSVGEDERLQTEGLTHLPGEDDEEEFKDEVDAPE
RSSGSYAWNDKYRPRKPKYFNKVLSGYRWTKYNRTHYDHDNPPPKTVQGY
MFNIFYPDLMDPSKTPTYTISKTDNTEVVIITFHAGPPYQDMAFKIVNRP
WVTSHRRGYRCSFDKGVLQLWFNFDRYYYRR*
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mRNA from alignment at tig00000872_pilon:253888..255483-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8252.t1 ID=Ggra8252.t1|Name=Ggra8252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000872_pilon:253888..255483- (Gracilaria gracilis GNS1m male)
ATGTCCGTATCTTCAAGGGGTAAACGGTCGCTGTGCTCACAGTTTGCTTG
TCTGGGCGTCTGGACGATGGCTCAAAGAATCCCGGTGTACGACAAAACTG
GCGACAGGCGAAGACGAACCGACGAGCACCATCGAACGGAAGAACATCGT
CGCCATCGAGAAGAAGATTCACGACGCGAACCAGACACCAGCGACACACA
GCAGCCTTTTGCAAAACGCCAGAAGCTGTCGAGCGGCGACCGCGAAGCAC
CGTTTGTATGGCGGAAGAAGGTCGAGACCCTTCGTAAACAGGGAATTGAC
CCCGAACAGGAAGAAGAGCGGCAGCGAGAAGAACGGCGACACGAACTCGC
CGCAGCGAAGAGAAGGAGGGAGCAACGAGAGCAAGAACGAGCAGAATGGG
AAGCAGAGCAAATTCAGAGCGCCAGAGAAAAGGAGGCGCAGATGAACGAA
GGATGGCACCAACAGGAAGCTTCTTTTCATGGAAAGCAGCACTTTCTGCG
CCAGTCTATTCGAATACGCGAGAAACGCCCTGTGGGCACTGATTTGCTCG
CAGAGTTTGTACGACTTGATTTGTCCAGTGATGTGACCATATTGAACATG
GATAAATTTTTGAAAGGTTTGGGTGAACAACATGTGAAGCAATTAGTGGA
TGGGGTGGAGGATGAACTCGACTACGTTGTGGACTTCAACAGAGAAGAAG
ACAATGATGTGTGGAACCGTACCATACGGCTTGAGTTCTGGAAATGCGTG
AGAGTTTGCGTTAGGGATCGACTAGAACAAACAAGCGCTGGTGAAGACGG
TATCCCCGACGCAGTGGCCACAGACGTGGAACTGTTGTTGCAGGGCAAGT
CAATTTCGAAGTTACGTGAAATGGAGACAGAAATTGACATGAAGCTCAAG
AACGGGGATGGAGGGGATGGAGCTTTTGGGGAGGTTGATTTCTGGCAGGC
TGCGTTGGCAAGAATTCGTGTTCGCGTTGCCACGGTGAGACTAAAGGAAA
TAACTGAGATGCTTTCGGTTGAACGTAGAGACAGAGAGTCCAAGCAGCCG
AAGCAAGGGAAGAACACCGAATCAAAGAGCGAAACAAAACATAAAAGGCA
ATCTGTTGGAGAGGATGAACGATTGCAAACAGAGGGACTGACCCACTTAC
CAGGAGAAGACGACGAGGAAGAATTCAAGGACGAGGTGGATGCTCCGGAA
CGAAGTAGTGGGAGCTATGCATGGAATGACAAGTACCGACCAAGGAAACC
GAAATACTTCAATAAGGTTCTAAGCGGTTATCGATGGACCAAGTACAATC
GTACCCACTACGATCATGACAATCCGCCTCCGAAAACAGTTCAAGGATAC
ATGTTTAATATTTTCTATCCAGATCTAATGGACCCGTCGAAGACACCAAC
GTACACAATAAGCAAAACTGATAATACAGAGGTTGTGATTATTACATTTC
ATGCAGGGCCACCGTATCAAGACATGGCGTTCAAGATAGTGAATCGACCA
TGGGTGACATCGCATCGAAGGGGTTATCGGTGTTCATTTGATAAGGGCGT
GTTACAACTGTGGTTTAACTTTGACAGGTACTATTATCGACGGTAA
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Coding sequence (CDS) from alignment at tig00000872_pilon:253888..255483-

>Ggra8252.t1 ID=Ggra8252.t1|Name=Ggra8252.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000872_pilon:253888..255483- (Gracilaria gracilis GNS1m male)
ATGTCCGTATCTTCAAGGGGTAAACGGTCGCTGTGCTCACAGTTTGCTTG
TCTGGGCGTCTGGACGATGGCTCAAAGAATCCCGGTGTACGACAAAACTG
GCGACAGGCGAAGACGAACCGACGAGCACCATCGAACGGAAGAACATCGT
CGCCATCGAGAAGAAGATTCACGACGCGAACCAGACACCAGCGACACACA
GCAGCCTTTTGCAAAACGCCAGAAGCTGTCGAGCGGCGACCGCGAAGCAC
CGTTTGTATGGCGGAAGAAGGTCGAGACCCTTCGTAAACAGGGAATTGAC
CCCGAACAGGAAGAAGAGCGGCAGCGAGAAGAACGGCGACACGAACTCGC
CGCAGCGAAGAGAAGGAGGGAGCAACGAGAGCAAGAACGAGCAGAATGGG
AAGCAGAGCAAATTCAGAGCGCCAGAGAAAAGGAGGCGCAGATGAACGAA
GGATGGCACCAACAGGAAGCTTCTTTTCATGGAAAGCAGCACTTTCTGCG
CCAGTCTATTCGAATACGCGAGAAACGCCCTGTGGGCACTGATTTGCTCG
CAGAGTTTGTACGACTTGATTTGTCCAGTGATGTGACCATATTGAACATG
GATAAATTTTTGAAAGGTTTGGGTGAACAACATGTGAAGCAATTAGTGGA
TGGGGTGGAGGATGAACTCGACTACGTTGTGGACTTCAACAGAGAAGAAG
ACAATGATGTGTGGAACCGTACCATACGGCTTGAGTTCTGGAAATGCGTG
AGAGTTTGCGTTAGGGATCGACTAGAACAAACAAGCGCTGGTGAAGACGG
TATCCCCGACGCAGTGGCCACAGACGTGGAACTGTTGTTGCAGGGCAAGT
CAATTTCGAAGTTACGTGAAATGGAGACAGAAATTGACATGAAGCTCAAG
AACGGGGATGGAGGGGATGGAGCTTTTGGGGAGGTTGATTTCTGGCAGGC
TGCGTTGGCAAGAATTCGTGTTCGCGTTGCCACGGTGAGACTAAAGGAAA
TAACTGAGATGCTTTCGGTTGAACGTAGAGACAGAGAGTCCAAGCAGCCG
AAGCAAGGGAAGAACACCGAATCAAAGAGCGAAACAAAACATAAAAGGCA
ATCTGTTGGAGAGGATGAACGATTGCAAACAGAGGGACTGACCCACTTAC
CAGGAGAAGACGACGAGGAAGAATTCAAGGACGAGGTGGATGCTCCGGAA
CGAAGTAGTGGGAGCTATGCATGGAATGACAAGTACCGACCAAGGAAACC
GAAATACTTCAATAAGGTTCTAAGCGGTTATCGATGGACCAAGTACAATC
GTACCCACTACGATCATGACAATCCGCCTCCGAAAACAGTTCAAGGATAC
ATGTTTAATATTTTCTATCCAGATCTAATGGACCCGTCGAAGACACCAAC
GTACACAATAAGCAAAACTGATAATACAGAGGTTGTGATTATTACATTTC
ATGCAGGGCCACCGTATCAAGACATGGCGTTCAAGATAGTGAATCGACCA
TGGGTGACATCGCATCGAAGGGGTTATCGGTGTTCATTTGATAAGGGCGT
GTTACAACTGTGGTTTAACTTTGACAGGTACTATTATCGACGGTAA
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