Ggra7241.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7241.t1
Unique NameGgra7241.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:374463..375896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005648881.1
Preferred nameNELFB
PFAMsCOBRA1
Max annot lvl2759|Eukaryota
KEGG koko:K15180
GOsGO:0000122,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0017053,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032021,GO:0032774,GO:0032784,GO:0032785,GO:0032991,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Evalue4.41e-06
EggNOG OGs2C1MK@1|root,2QTMJ@2759|Eukaryota
Descriptionnegative regulation of transcription elongation from RNA polymerase II promoter
COG categoryS
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7241Ggra7241Gracilaria gracilis GNS1m malegenetig00000871_pilon 374463..375896 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7241.t1.start1Ggra7241.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 374463..374465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7241.t1.CDS1Ggra7241.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 374463..375896 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7241.t1.exon1Ggra7241.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 374463..375896 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7241.t1.stop1Ggra7241.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 375894..375896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7241.t1Ggra7241.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 374463..375896 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7241.t1 ID=Ggra7241.t1|Name=Ggra7241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=478bp
MEPALNSQFYQIGYAGKDAVKECFENRDYEIEKVIEFIMEFKNLRGLQIG
TTPLTLLKKGGFVPSRTLTEVLKIVIDKMKRDISTLSHDKLDCLLEKSFT
YLTVPHLAEIPIATLERINVVDPHIWKQIVDNGLNDSPYTDLPLSIKKRI
WSFEPKALDHEVDVLIDSLPDTANPENLDDMNRDRHRMRSTNAKLNELLR
MLEGMGENEVMQVMEKMVERASVEQVPSKLDTIANFYHDLVLRLPTASVS
GPNLMTVRKMGKFLDTKAGHDIALDTHLLKEIREAMSAEHPNGAVILLVG
STYSRDFLADQLIYGLISRRGPINDFTDENILKSAASHLRADPHVEDLTF
LNLCNMKTGTLLSGSGSVSEAEFEEPFQLFFQLIMDEIHMEITHFHDKFY
SSNIGLPNSRLVEAVQKGRLQRRVLTSYCLQQLIHGNFIALSRYRLLLED
VLRAADNTTEPREVTLARELIFKIIDP*
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spliced messenger RNA

>Ggra7241.t1 ID=Ggra7241.t1|Name=Ggra7241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000871_pilon:374463..375896+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCAGCTTTGAACTCTCAGTTTTATCAAATCGGATACGCGGGGAA
AGATGCAGTGAAGGAGTGCTTTGAAAACCGCGATTATGAGATAGAAAAGG
TTATTGAGTTTATCATGGAGTTCAAGAATCTGAGAGGGCTACAGATTGGA
ACTACCCCTTTGACTCTTTTGAAGAAGGGTGGATTCGTTCCTAGTCGCAC
ACTGACCGAGGTTCTCAAGATTGTCATAGATAAGATGAAACGGGATATTT
CTACTCTGTCACACGATAAGTTGGACTGCTTGTTGGAAAAGAGTTTCACC
TACCTCACCGTCCCACATCTCGCTGAAATTCCCATTGCCACCCTAGAACG
TATAAACGTTGTCGACCCGCACATTTGGAAACAGATTGTTGACAACGGAC
TAAATGACTCTCCATATACGGATCTTCCTCTTTCTATCAAGAAGAGAATA
TGGTCGTTCGAACCGAAAGCATTGGACCATGAAGTGGATGTATTGATTGA
CAGTCTACCGGATACGGCGAATCCTGAAAACCTTGATGATATGAACCGTG
ACCGACATCGGATGCGTTCGACAAACGCCAAGCTTAACGAACTCCTTCGC
ATGCTGGAAGGAATGGGCGAAAATGAAGTTATGCAGGTTATGGAGAAAAT
GGTTGAGAGAGCTTCTGTAGAGCAAGTTCCATCTAAACTTGATACCATTG
CTAATTTTTATCACGACTTAGTTCTTCGACTTCCTACTGCGTCTGTATCA
GGGCCAAATCTCATGACTGTGCGAAAGATGGGCAAGTTTCTCGACACCAA
GGCAGGTCATGATATTGCTTTGGACACGCATTTGTTGAAAGAGATTCGCG
AAGCCATGTCCGCCGAACATCCAAATGGAGCGGTGATATTATTAGTCGGG
TCAACCTACTCACGTGATTTCTTGGCCGACCAGCTTATATACGGTTTGAT
ATCGAGAAGGGGTCCTATCAATGACTTCACGGATGAAAACATATTGAAAT
CTGCTGCCTCGCATTTGAGAGCAGACCCGCACGTAGAGGACCTCACGTTT
TTGAATCTCTGCAACATGAAGACCGGAACGTTGCTTTCAGGTTCTGGTTC
GGTATCTGAGGCGGAATTTGAAGAACCATTTCAGTTGTTTTTCCAGCTTA
TAATGGATGAAATCCATATGGAAATCACTCACTTTCATGATAAGTTCTAC
TCCTCCAACATAGGACTTCCAAATTCGCGTCTTGTTGAGGCAGTACAGAA
GGGAAGGTTGCAAAGAAGGGTACTCACGTCTTACTGCCTTCAGCAGTTAA
TACATGGGAATTTTATCGCGTTATCCCGATACAGATTACTCCTAGAAGAC
GTTCTACGAGCGGCTGATAATACAACAGAGCCACGAGAGGTCACGTTGGC
GCGCGAACTAATCTTTAAGATTATTGACCCTTAA
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protein sequence of Ggra7241.t1

>Ggra7241.t1 ID=Ggra7241.t1|Name=Ggra7241.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=478bp
MEPALNSQFYQIGYAGKDAVKECFENRDYEIEKVIEFIMEFKNLRGLQIG
TTPLTLLKKGGFVPSRTLTEVLKIVIDKMKRDISTLSHDKLDCLLEKSFT
YLTVPHLAEIPIATLERINVVDPHIWKQIVDNGLNDSPYTDLPLSIKKRI
WSFEPKALDHEVDVLIDSLPDTANPENLDDMNRDRHRMRSTNAKLNELLR
MLEGMGENEVMQVMEKMVERASVEQVPSKLDTIANFYHDLVLRLPTASVS
GPNLMTVRKMGKFLDTKAGHDIALDTHLLKEIREAMSAEHPNGAVILLVG
STYSRDFLADQLIYGLISRRGPINDFTDENILKSAASHLRADPHVEDLTF
LNLCNMKTGTLLSGSGSVSEAEFEEPFQLFFQLIMDEIHMEITHFHDKFY
SSNIGLPNSRLVEAVQKGRLQRRVLTSYCLQQLIHGNFIALSRYRLLLED
VLRAADNTTEPREVTLARELIFKIIDP*
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mRNA from alignment at tig00000871_pilon:374463..375896+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7241.t1 ID=Ggra7241.t1|Name=Ggra7241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1434bp|location=Sequence derived from alignment at tig00000871_pilon:374463..375896+ (Gracilaria gracilis GNS1m male)
ATGGAGCCAGCTTTGAACTCTCAGTTTTATCAAATCGGATACGCGGGGAA
AGATGCAGTGAAGGAGTGCTTTGAAAACCGCGATTATGAGATAGAAAAGG
TTATTGAGTTTATCATGGAGTTCAAGAATCTGAGAGGGCTACAGATTGGA
ACTACCCCTTTGACTCTTTTGAAGAAGGGTGGATTCGTTCCTAGTCGCAC
ACTGACCGAGGTTCTCAAGATTGTCATAGATAAGATGAAACGGGATATTT
CTACTCTGTCACACGATAAGTTGGACTGCTTGTTGGAAAAGAGTTTCACC
TACCTCACCGTCCCACATCTCGCTGAAATTCCCATTGCCACCCTAGAACG
TATAAACGTTGTCGACCCGCACATTTGGAAACAGATTGTTGACAACGGAC
TAAATGACTCTCCATATACGGATCTTCCTCTTTCTATCAAGAAGAGAATA
TGGTCGTTCGAACCGAAAGCATTGGACCATGAAGTGGATGTATTGATTGA
CAGTCTACCGGATACGGCGAATCCTGAAAACCTTGATGATATGAACCGTG
ACCGACATCGGATGCGTTCGACAAACGCCAAGCTTAACGAACTCCTTCGC
ATGCTGGAAGGAATGGGCGAAAATGAAGTTATGCAGGTTATGGAGAAAAT
GGTTGAGAGAGCTTCTGTAGAGCAAGTTCCATCTAAACTTGATACCATTG
CTAATTTTTATCACGACTTAGTTCTTCGACTTCCTACTGCGTCTGTATCA
GGGCCAAATCTCATGACTGTGCGAAAGATGGGCAAGTTTCTCGACACCAA
GGCAGGTCATGATATTGCTTTGGACACGCATTTGTTGAAAGAGATTCGCG
AAGCCATGTCCGCCGAACATCCAAATGGAGCGGTGATATTATTAGTCGGG
TCAACCTACTCACGTGATTTCTTGGCCGACCAGCTTATATACGGTTTGAT
ATCGAGAAGGGGTCCTATCAATGACTTCACGGATGAAAACATATTGAAAT
CTGCTGCCTCGCATTTGAGAGCAGACCCGCACGTAGAGGACCTCACGTTT
TTGAATCTCTGCAACATGAAGACCGGAACGTTGCTTTCAGGTTCTGGTTC
GGTATCTGAGGCGGAATTTGAAGAACCATTTCAGTTGTTTTTCCAGCTTA
TAATGGATGAAATCCATATGGAAATCACTCACTTTCATGATAAGTTCTAC
TCCTCCAACATAGGACTTCCAAATTCGCGTCTTGTTGAGGCAGTACAGAA
GGGAAGGTTGCAAAGAAGGGTACTCACGTCTTACTGCCTTCAGCAGTTAA
TACATGGGAATTTTATCGCGTTATCCCGATACAGATTACTCCTAGAAGAC
GTTCTACGAGCGGCTGATAATACAACAGAGCCACGAGAGGTCACGTTGGC
GCGCGAACTAATCTTTAAGATTATTGACCCTTAA
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Coding sequence (CDS) from alignment at tig00000871_pilon:374463..375896+

>Ggra7241.t1 ID=Ggra7241.t1|Name=Ggra7241.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1434bp|location=Sequence derived from alignment at tig00000871_pilon:374463..375896+ (Gracilaria gracilis GNS1m male)
ATGGAGCCAGCTTTGAACTCTCAGTTTTATCAAATCGGATACGCGGGGAA
AGATGCAGTGAAGGAGTGCTTTGAAAACCGCGATTATGAGATAGAAAAGG
TTATTGAGTTTATCATGGAGTTCAAGAATCTGAGAGGGCTACAGATTGGA
ACTACCCCTTTGACTCTTTTGAAGAAGGGTGGATTCGTTCCTAGTCGCAC
ACTGACCGAGGTTCTCAAGATTGTCATAGATAAGATGAAACGGGATATTT
CTACTCTGTCACACGATAAGTTGGACTGCTTGTTGGAAAAGAGTTTCACC
TACCTCACCGTCCCACATCTCGCTGAAATTCCCATTGCCACCCTAGAACG
TATAAACGTTGTCGACCCGCACATTTGGAAACAGATTGTTGACAACGGAC
TAAATGACTCTCCATATACGGATCTTCCTCTTTCTATCAAGAAGAGAATA
TGGTCGTTCGAACCGAAAGCATTGGACCATGAAGTGGATGTATTGATTGA
CAGTCTACCGGATACGGCGAATCCTGAAAACCTTGATGATATGAACCGTG
ACCGACATCGGATGCGTTCGACAAACGCCAAGCTTAACGAACTCCTTCGC
ATGCTGGAAGGAATGGGCGAAAATGAAGTTATGCAGGTTATGGAGAAAAT
GGTTGAGAGAGCTTCTGTAGAGCAAGTTCCATCTAAACTTGATACCATTG
CTAATTTTTATCACGACTTAGTTCTTCGACTTCCTACTGCGTCTGTATCA
GGGCCAAATCTCATGACTGTGCGAAAGATGGGCAAGTTTCTCGACACCAA
GGCAGGTCATGATATTGCTTTGGACACGCATTTGTTGAAAGAGATTCGCG
AAGCCATGTCCGCCGAACATCCAAATGGAGCGGTGATATTATTAGTCGGG
TCAACCTACTCACGTGATTTCTTGGCCGACCAGCTTATATACGGTTTGAT
ATCGAGAAGGGGTCCTATCAATGACTTCACGGATGAAAACATATTGAAAT
CTGCTGCCTCGCATTTGAGAGCAGACCCGCACGTAGAGGACCTCACGTTT
TTGAATCTCTGCAACATGAAGACCGGAACGTTGCTTTCAGGTTCTGGTTC
GGTATCTGAGGCGGAATTTGAAGAACCATTTCAGTTGTTTTTCCAGCTTA
TAATGGATGAAATCCATATGGAAATCACTCACTTTCATGATAAGTTCTAC
TCCTCCAACATAGGACTTCCAAATTCGCGTCTTGTTGAGGCAGTACAGAA
GGGAAGGTTGCAAAGAAGGGTACTCACGTCTTACTGCCTTCAGCAGTTAA
TACATGGGAATTTTATCGCGTTATCCCGATACAGATTACTCCTAGAAGAC
GTTCTACGAGCGGCTGATAATACAACAGAGCCACGAGAGGTCACGTTGGC
GCGCGAACTAATCTTTAAGATTATTGACCCTTAA
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