Ggra7235.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7235.t1
Unique Name	Ggra7235.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	787

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000871_pilon	contig	tig00000871_pilon:354222..356582 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173028.ANKO01000170_gene3364
PFAMs	C2,Lipoxygenase
Max annot lvl	1117\|Cyanobacteria
Evalue	1.19e-83
EggNOG OGs	2DBJG@1\|root,2Z9KW@2\|Bacteria,1GCWX@1117\|Cyanobacteria,1HF3K@1150\|Oscillatoriales
Description	Protein kinase C conserved region 2 (CalB)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7235	Ggra7235	Gracilaria gracilis GNS1m male	gene	tig00000871_pilon 354222..356582 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7235.t1.stop1	Ggra7235.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000871_pilon 354222..354224 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7235.t1.CDS1	Ggra7235.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000871_pilon 354222..356582 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7235.t1.exon1	Ggra7235.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000871_pilon 354222..356582 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7235.t1.start1	Ggra7235.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000871_pilon 356580..356582 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7235.t1	Ggra7235.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000871_pilon 354222..356582 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000871_pilon:354222..356582-
coding sequence from alignment at tig00000871_pilon:354222..356582-

mRNA sequence

>Ggra7235.t1 ID=Ggra7235.t1|Name=Ggra7235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=787bp
MSGPPDSAPDKGKRGFGFCACFGEPEDQRPSPETIYVVPPSDKKTPADPV
EPPQHQEPPPKDETEEVVPPPTKLNHKVDGSPSGNDLNPVIDPANFKASG
EQQTPHEGNTIQSENKEPQPNHEQAHVVVHDVNAKPQSNKVIVHKVRSEA
EVHRNMPADVTLTLKMFGKAVEGIGMQLFKLANEWHAGTFSRKYMYERYP
HPLPLPRRVVSLPEDEAFSSSKVGAIVERAHTFLRSQMPFVARLDENPRD
MFADIGYDAFRAFFGNEELFPMPRGIISSDKSFWRNDSTFTAQFLTGCNP
TVIEMVTSMEIVNQRMPKEIVGLKDPEGRTVPQLVEQKALLWADYSTLAN
AARSAGAKEHPSGSFCNPIRFDKVGVPVRPMEKHFYAPFVAFYVKADGQL
GVLGIMLTRHTDGRTNEVYNEETCKETPNTYTFAKMHVACADNQFHQFYA
HLGRCHLVFEPFGVAVRNVFKLGTPEAQQHIVGKLLGPHFRDHLAINWLA
RNTLVAHGEDAIPFTDAGFALGAKGGLVLLAMQYRKWKLSDQAFPQQLRS
RGFDPYGNDKLQYYYRDDGMMVWHAMKNYVDLAIKLWYNKPDATQLNDAI
ANDEVLKSWCKEMRDSERAAVETFPAHFESAKDLCETVTTIMYNVSAEHS
AVNGSQERYLSYVPNRPNALFRPVPSPSAPDMNLFRDILMIHRARGDDDD
VGASMPLAFAMFQVQFSQLLTLQPTHTLMELESHGVPEKAVSLLKRELQK
AHHVISFRNMQVEDEHPELAPYEFLDPANVALSIEI*

spliced messenger RNA

>Ggra7235.t1 ID=Ggra7235.t1|Name=Ggra7235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2361bp|location=Sequence derived from alignment at tig00000871_pilon:354222..356582- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGCCCGCCAGACAGCGCTCCCGATAAGGGCAAACGAGGCTTTGG
TTTCTGCGCGTGCTTTGGCGAACCCGAAGACCAGCGCCCCTCCCCTGAAA
CTATCTATGTAGTACCTCCAAGCGACAAGAAAACCCCCGCAGATCCCGTT
GAGCCACCCCAGCACCAAGAGCCGCCGCCTAAGGACGAAACTGAGGAGGT
AGTGCCTCCTCCTACAAAACTCAATCACAAGGTCGATGGTTCGCCTTCTG
GAAATGACCTCAACCCAGTGATAGATCCTGCCAACTTCAAGGCATCCGGA
GAGCAGCAAACCCCTCATGAAGGAAACACTATTCAATCGGAGAACAAGGA
ACCACAACCAAACCATGAACAAGCACACGTCGTCGTTCATGATGTGAACG
CCAAGCCTCAGAGCAATAAGGTCATCGTCCACAAAGTCCGCTCCGAGGCT
GAAGTGCACCGCAACATGCCAGCAGATGTAACGTTGACGCTGAAAATGTT
CGGCAAGGCAGTCGAAGGCATTGGAATGCAGCTGTTCAAACTGGCCAACG
AATGGCACGCAGGTACATTCTCTCGCAAGTACATGTACGAAAGGTACCCA
CATCCACTTCCGCTACCAAGACGTGTCGTATCTCTTCCAGAAGACGAGGC
CTTCTCGAGCTCGAAGGTGGGCGCCATTGTCGAAAGAGCCCACACTTTTC
TTCGTTCTCAGATGCCATTCGTTGCTCGCCTTGACGAAAATCCTAGGGAC
ATGTTCGCCGATATTGGGTATGACGCTTTTAGGGCTTTCTTTGGCAACGA
GGAGCTTTTCCCGATGCCGCGCGGTATTATCAGTTCGGACAAATCTTTCT
GGCGCAATGATAGCACCTTTACAGCCCAGTTTCTTACCGGGTGTAATCCA
ACCGTGATTGAAATGGTGACCAGTATGGAGATTGTTAACCAGCGTATGCC
TAAGGAAATAGTCGGCCTCAAAGACCCAGAAGGTCGCACCGTCCCTCAAC
TCGTTGAACAAAAGGCGTTGCTATGGGCTGATTATAGTACCTTAGCAAAC
GCAGCACGTAGTGCTGGCGCTAAAGAACATCCATCTGGCAGTTTCTGTAA
TCCGATAAGGTTTGATAAGGTAGGCGTACCAGTACGCCCTATGGAGAAGC
ACTTCTATGCACCATTTGTTGCCTTTTACGTGAAGGCTGATGGTCAACTG
GGTGTTTTGGGAATCATGCTTACACGACACACTGATGGAAGAACAAATGA
AGTGTATAACGAAGAAACATGCAAGGAAACGCCAAACACGTACACTTTTG
CTAAGATGCATGTGGCATGTGCAGACAACCAATTTCATCAGTTCTATGCT
CATCTCGGTCGTTGTCACCTGGTGTTCGAACCCTTCGGTGTAGCTGTGCG
TAACGTTTTCAAACTAGGTACCCCAGAAGCACAGCAGCATATAGTTGGAA
AGCTATTAGGCCCTCACTTCCGTGATCACTTGGCTATCAATTGGCTGGCA
AGAAATACTTTAGTTGCTCATGGAGAAGATGCAATTCCCTTCACAGATGC
GGGATTTGCTTTAGGAGCTAAGGGAGGTCTAGTATTGCTGGCCATGCAAT
ATCGCAAGTGGAAGCTCTCAGACCAAGCATTCCCACAGCAGCTTCGAAGC
CGTGGCTTCGATCCATACGGTAATGATAAGCTCCAGTACTATTACCGAGA
CGATGGAATGATGGTATGGCATGCTATGAAGAATTATGTGGACCTTGCGA
TTAAGCTGTGGTACAATAAACCCGATGCAACTCAGCTAAACGATGCAATT
GCAAACGACGAGGTGCTCAAATCATGGTGCAAGGAAATGAGAGATTCAGA
GCGAGCGGCAGTGGAAACATTCCCAGCCCACTTCGAATCCGCTAAAGACT
TGTGTGAAACGGTTACTACGATTATGTACAATGTGTCTGCAGAGCACTCT
GCTGTGAATGGCAGCCAGGAAAGGTACCTATCGTACGTTCCGAATAGGCC
AAACGCGTTGTTCAGACCAGTGCCATCACCATCTGCTCCGGACATGAACC
TATTCCGAGATATCCTTATGATTCATCGGGCTAGGGGTGACGATGACGAC
GTCGGTGCGTCCATGCCACTGGCGTTTGCCATGTTCCAAGTTCAATTCTC
GCAACTATTGACACTGCAACCAACGCATACGCTTATGGAGTTGGAGAGCC
ACGGAGTGCCGGAGAAGGCGGTTTCTCTATTGAAGCGGGAGCTTCAAAAG
GCGCATCATGTGATAAGCTTTAGAAACATGCAAGTCGAAGACGAGCATCC
AGAACTGGCGCCGTACGAGTTCCTTGACCCTGCGAATGTGGCGCTAAGCA
TTGAAATCTAG

protein sequence of Ggra7235.t1

>Ggra7235.t1 ID=Ggra7235.t1|Name=Ggra7235.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=787bp
MSGPPDSAPDKGKRGFGFCACFGEPEDQRPSPETIYVVPPSDKKTPADPV
EPPQHQEPPPKDETEEVVPPPTKLNHKVDGSPSGNDLNPVIDPANFKASG
EQQTPHEGNTIQSENKEPQPNHEQAHVVVHDVNAKPQSNKVIVHKVRSEA
EVHRNMPADVTLTLKMFGKAVEGIGMQLFKLANEWHAGTFSRKYMYERYP
HPLPLPRRVVSLPEDEAFSSSKVGAIVERAHTFLRSQMPFVARLDENPRD
MFADIGYDAFRAFFGNEELFPMPRGIISSDKSFWRNDSTFTAQFLTGCNP
TVIEMVTSMEIVNQRMPKEIVGLKDPEGRTVPQLVEQKALLWADYSTLAN
AARSAGAKEHPSGSFCNPIRFDKVGVPVRPMEKHFYAPFVAFYVKADGQL
GVLGIMLTRHTDGRTNEVYNEETCKETPNTYTFAKMHVACADNQFHQFYA
HLGRCHLVFEPFGVAVRNVFKLGTPEAQQHIVGKLLGPHFRDHLAINWLA
RNTLVAHGEDAIPFTDAGFALGAKGGLVLLAMQYRKWKLSDQAFPQQLRS
RGFDPYGNDKLQYYYRDDGMMVWHAMKNYVDLAIKLWYNKPDATQLNDAI
ANDEVLKSWCKEMRDSERAAVETFPAHFESAKDLCETVTTIMYNVSAEHS
AVNGSQERYLSYVPNRPNALFRPVPSPSAPDMNLFRDILMIHRARGDDDD
VGASMPLAFAMFQVQFSQLLTLQPTHTLMELESHGVPEKAVSLLKRELQK
AHHVISFRNMQVEDEHPELAPYEFLDPANVALSIEI*

mRNA from alignment at tig00000871_pilon:354222..356582-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7235.t1 ID=Ggra7235.t1|Name=Ggra7235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2361bp|location=Sequence derived from alignment at tig00000871_pilon:354222..356582- (Gracilaria gracilis GNS1m male)
ATGTCTGGCCCGCCAGACAGCGCTCCCGATAAGGGCAAACGAGGCTTTGG
TTTCTGCGCGTGCTTTGGCGAACCCGAAGACCAGCGCCCCTCCCCTGAAA
CTATCTATGTAGTACCTCCAAGCGACAAGAAAACCCCCGCAGATCCCGTT
GAGCCACCCCAGCACCAAGAGCCGCCGCCTAAGGACGAAACTGAGGAGGT
AGTGCCTCCTCCTACAAAACTCAATCACAAGGTCGATGGTTCGCCTTCTG
GAAATGACCTCAACCCAGTGATAGATCCTGCCAACTTCAAGGCATCCGGA
GAGCAGCAAACCCCTCATGAAGGAAACACTATTCAATCGGAGAACAAGGA
ACCACAACCAAACCATGAACAAGCACACGTCGTCGTTCATGATGTGAACG
CCAAGCCTCAGAGCAATAAGGTCATCGTCCACAAAGTCCGCTCCGAGGCT
GAAGTGCACCGCAACATGCCAGCAGATGTAACGTTGACGCTGAAAATGTT
CGGCAAGGCAGTCGAAGGCATTGGAATGCAGCTGTTCAAACTGGCCAACG
AATGGCACGCAGGTACATTCTCTCGCAAGTACATGTACGAAAGGTACCCA
CATCCACTTCCGCTACCAAGACGTGTCGTATCTCTTCCAGAAGACGAGGC
CTTCTCGAGCTCGAAGGTGGGCGCCATTGTCGAAAGAGCCCACACTTTTC
TTCGTTCTCAGATGCCATTCGTTGCTCGCCTTGACGAAAATCCTAGGGAC
ATGTTCGCCGATATTGGGTATGACGCTTTTAGGGCTTTCTTTGGCAACGA
GGAGCTTTTCCCGATGCCGCGCGGTATTATCAGTTCGGACAAATCTTTCT
GGCGCAATGATAGCACCTTTACAGCCCAGTTTCTTACCGGGTGTAATCCA
ACCGTGATTGAAATGGTGACCAGTATGGAGATTGTTAACCAGCGTATGCC
TAAGGAAATAGTCGGCCTCAAAGACCCAGAAGGTCGCACCGTCCCTCAAC
TCGTTGAACAAAAGGCGTTGCTATGGGCTGATTATAGTACCTTAGCAAAC
GCAGCACGTAGTGCTGGCGCTAAAGAACATCCATCTGGCAGTTTCTGTAA
TCCGATAAGGTTTGATAAGGTAGGCGTACCAGTACGCCCTATGGAGAAGC
ACTTCTATGCACCATTTGTTGCCTTTTACGTGAAGGCTGATGGTCAACTG
GGTGTTTTGGGAATCATGCTTACACGACACACTGATGGAAGAACAAATGA
AGTGTATAACGAAGAAACATGCAAGGAAACGCCAAACACGTACACTTTTG
CTAAGATGCATGTGGCATGTGCAGACAACCAATTTCATCAGTTCTATGCT
CATCTCGGTCGTTGTCACCTGGTGTTCGAACCCTTCGGTGTAGCTGTGCG
TAACGTTTTCAAACTAGGTACCCCAGAAGCACAGCAGCATATAGTTGGAA
AGCTATTAGGCCCTCACTTCCGTGATCACTTGGCTATCAATTGGCTGGCA
AGAAATACTTTAGTTGCTCATGGAGAAGATGCAATTCCCTTCACAGATGC
GGGATTTGCTTTAGGAGCTAAGGGAGGTCTAGTATTGCTGGCCATGCAAT
ATCGCAAGTGGAAGCTCTCAGACCAAGCATTCCCACAGCAGCTTCGAAGC
CGTGGCTTCGATCCATACGGTAATGATAAGCTCCAGTACTATTACCGAGA
CGATGGAATGATGGTATGGCATGCTATGAAGAATTATGTGGACCTTGCGA
TTAAGCTGTGGTACAATAAACCCGATGCAACTCAGCTAAACGATGCAATT
GCAAACGACGAGGTGCTCAAATCATGGTGCAAGGAAATGAGAGATTCAGA
GCGAGCGGCAGTGGAAACATTCCCAGCCCACTTCGAATCCGCTAAAGACT
TGTGTGAAACGGTTACTACGATTATGTACAATGTGTCTGCAGAGCACTCT
GCTGTGAATGGCAGCCAGGAAAGGTACCTATCGTACGTTCCGAATAGGCC
AAACGCGTTGTTCAGACCAGTGCCATCACCATCTGCTCCGGACATGAACC
TATTCCGAGATATCCTTATGATTCATCGGGCTAGGGGTGACGATGACGAC
GTCGGTGCGTCCATGCCACTGGCGTTTGCCATGTTCCAAGTTCAATTCTC
GCAACTATTGACACTGCAACCAACGCATACGCTTATGGAGTTGGAGAGCC
ACGGAGTGCCGGAGAAGGCGGTTTCTCTATTGAAGCGGGAGCTTCAAAAG
GCGCATCATGTGATAAGCTTTAGAAACATGCAAGTCGAAGACGAGCATCC
AGAACTGGCGCCGTACGAGTTCCTTGACCCTGCGAATGTGGCGCTAAGCA
TTGAAATCTAG

Coding sequence (CDS) from alignment at tig00000871_pilon:354222..356582-

>Ggra7235.t1 ID=Ggra7235.t1|Name=Ggra7235.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2361bp|location=Sequence derived from alignment at tig00000871_pilon:354222..356582- (Gracilaria gracilis GNS1m male)
ATGTCTGGCCCGCCAGACAGCGCTCCCGATAAGGGCAAACGAGGCTTTGG
TTTCTGCGCGTGCTTTGGCGAACCCGAAGACCAGCGCCCCTCCCCTGAAA
CTATCTATGTAGTACCTCCAAGCGACAAGAAAACCCCCGCAGATCCCGTT
GAGCCACCCCAGCACCAAGAGCCGCCGCCTAAGGACGAAACTGAGGAGGT
AGTGCCTCCTCCTACAAAACTCAATCACAAGGTCGATGGTTCGCCTTCTG
GAAATGACCTCAACCCAGTGATAGATCCTGCCAACTTCAAGGCATCCGGA
GAGCAGCAAACCCCTCATGAAGGAAACACTATTCAATCGGAGAACAAGGA
ACCACAACCAAACCATGAACAAGCACACGTCGTCGTTCATGATGTGAACG
CCAAGCCTCAGAGCAATAAGGTCATCGTCCACAAAGTCCGCTCCGAGGCT
GAAGTGCACCGCAACATGCCAGCAGATGTAACGTTGACGCTGAAAATGTT
CGGCAAGGCAGTCGAAGGCATTGGAATGCAGCTGTTCAAACTGGCCAACG
AATGGCACGCAGGTACATTCTCTCGCAAGTACATGTACGAAAGGTACCCA
CATCCACTTCCGCTACCAAGACGTGTCGTATCTCTTCCAGAAGACGAGGC
CTTCTCGAGCTCGAAGGTGGGCGCCATTGTCGAAAGAGCCCACACTTTTC
TTCGTTCTCAGATGCCATTCGTTGCTCGCCTTGACGAAAATCCTAGGGAC
ATGTTCGCCGATATTGGGTATGACGCTTTTAGGGCTTTCTTTGGCAACGA
GGAGCTTTTCCCGATGCCGCGCGGTATTATCAGTTCGGACAAATCTTTCT
GGCGCAATGATAGCACCTTTACAGCCCAGTTTCTTACCGGGTGTAATCCA
ACCGTGATTGAAATGGTGACCAGTATGGAGATTGTTAACCAGCGTATGCC
TAAGGAAATAGTCGGCCTCAAAGACCCAGAAGGTCGCACCGTCCCTCAAC
TCGTTGAACAAAAGGCGTTGCTATGGGCTGATTATAGTACCTTAGCAAAC
GCAGCACGTAGTGCTGGCGCTAAAGAACATCCATCTGGCAGTTTCTGTAA
TCCGATAAGGTTTGATAAGGTAGGCGTACCAGTACGCCCTATGGAGAAGC
ACTTCTATGCACCATTTGTTGCCTTTTACGTGAAGGCTGATGGTCAACTG
GGTGTTTTGGGAATCATGCTTACACGACACACTGATGGAAGAACAAATGA
AGTGTATAACGAAGAAACATGCAAGGAAACGCCAAACACGTACACTTTTG
CTAAGATGCATGTGGCATGTGCAGACAACCAATTTCATCAGTTCTATGCT
CATCTCGGTCGTTGTCACCTGGTGTTCGAACCCTTCGGTGTAGCTGTGCG
TAACGTTTTCAAACTAGGTACCCCAGAAGCACAGCAGCATATAGTTGGAA
AGCTATTAGGCCCTCACTTCCGTGATCACTTGGCTATCAATTGGCTGGCA
AGAAATACTTTAGTTGCTCATGGAGAAGATGCAATTCCCTTCACAGATGC
GGGATTTGCTTTAGGAGCTAAGGGAGGTCTAGTATTGCTGGCCATGCAAT
ATCGCAAGTGGAAGCTCTCAGACCAAGCATTCCCACAGCAGCTTCGAAGC
CGTGGCTTCGATCCATACGGTAATGATAAGCTCCAGTACTATTACCGAGA
CGATGGAATGATGGTATGGCATGCTATGAAGAATTATGTGGACCTTGCGA
TTAAGCTGTGGTACAATAAACCCGATGCAACTCAGCTAAACGATGCAATT
GCAAACGACGAGGTGCTCAAATCATGGTGCAAGGAAATGAGAGATTCAGA
GCGAGCGGCAGTGGAAACATTCCCAGCCCACTTCGAATCCGCTAAAGACT
TGTGTGAAACGGTTACTACGATTATGTACAATGTGTCTGCAGAGCACTCT
GCTGTGAATGGCAGCCAGGAAAGGTACCTATCGTACGTTCCGAATAGGCC
AAACGCGTTGTTCAGACCAGTGCCATCACCATCTGCTCCGGACATGAACC
TATTCCGAGATATCCTTATGATTCATCGGGCTAGGGGTGACGATGACGAC
GTCGGTGCGTCCATGCCACTGGCGTTTGCCATGTTCCAAGTTCAATTCTC
GCAACTATTGACACTGCAACCAACGCATACGCTTATGGAGTTGGAGAGCC
ACGGAGTGCCGGAGAAGGCGGTTTCTCTATTGAAGCGGGAGCTTCAAAAG
GCGCATCATGTGATAAGCTTTAGAAACATGCAAGTCGAAGACGAGCATCC
AGAACTGGCGCCGTACGAGTTCCTTGACCCTGCGAATGTGGCGCTAAGCA
TTGAAATCTAG