Ggra7252.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7252.t1
Unique Name	Ggra7252.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	630

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000871_pilon	contig	tig00000871_pilon:477612..479501 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85982.XP_007318724.1
Preferred name	DBP6
PFAMs	DEAD,Helicase_C
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14807
GOs	GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360,GO:1990904
Evalue	8.68e-63
EggNOG OGs	COG0513@1\|root,KOG0350@2759\|Eukaryota,39BP1@33154\|Opisthokonta,3NVF5@4751\|Fungi,3UZAV@5204\|Basidiomycota,22654@155619\|Agaricomycetes
EC	3.6.4.13
Description	Belongs to the DEAD box helicase family
COG category	A
BRITE	ko00000,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7252	Ggra7252	Gracilaria gracilis GNS1m male	gene	tig00000871_pilon 477612..479501 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7252.t1.start1	Ggra7252.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000871_pilon 477612..477614 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7252.t1.CDS1	Ggra7252.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000871_pilon 477612..479501 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7252.t1.exon1	Ggra7252.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000871_pilon 477612..479501 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7252.t1.stop1	Ggra7252.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000871_pilon 479499..479501 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7252.t1	Ggra7252.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000871_pilon 477612..479501 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000871_pilon:477612..479501+
coding sequence from alignment at tig00000871_pilon:477612..479501+

mRNA sequence

>Ggra7252.t1 ID=Ggra7252.t1|Name=Ggra7252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp
MKSSLSQPKRIQFELCSAEDGGKKSSPDKQLTKKGPGSVLDPRLRGELAS
QLGIRKIFRMQEVLLSYVLTEGTRGRVGDVVLCAPTGSGKTLAYALPIVQ
DVLDRRMPRLRAIIVVPTRDLAAQVYSVFSALTKKFGILALCIVGSSPIV
EEALNVPKAEILIATPGRLVDHINNGDYLNLGDVRYLVLDESDRLLEDSY
QEWIDVLIPALGKQKQTFKGGESGRPMPHTSYGLLNLAIRPDISMRTGSS
YSGLSQPNVRKILASATQTRNPMRLHKLDLRDVCFFEPIGSQGNQTGAID
LSEEKYTVPATMTEYGWIVENVQQKPLALLQLLGWIPFASEDEKVSRRVA
KDRSISQAGAKLVFTNSVDSAHRLCRLLEICAHSLGRNGTILEMSGTLSA
KRRKYVLDAVRRKISSDGGKGHDDNPPFVVVVCSDVLARGMDILTVDTVI
NYDGPAHISTYLHRAGRTARAGRKGNVFTLLIGNQVRHFRAMVYEAMRDE
KKVRTIDMKIQTEQASQRSLMVNSLDSLRRVMNSERYGALHHDESLPEFM
LYALNKLNNRRSNGDLYFDYEEEESDMKRRRLTIDAISGADQDEENELQS
ESTLHEILFAQIGRNLLHPGGHAQDRVVD*

spliced messenger RNA

>Ggra7252.t1 ID=Ggra7252.t1|Name=Ggra7252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000871_pilon:477612..479501+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCTAGTCTTTCGCAGCCGAAGCGAATCCAGTTTGAGCTATGTTC
TGCAGAAGATGGTGGAAAGAAGTCAAGCCCCGACAAGCAGCTTACAAAGA
AAGGACCGGGTTCCGTGTTGGACCCGCGCCTGCGGGGTGAGCTTGCGTCA
CAACTTGGAATACGGAAGATATTTCGCATGCAAGAAGTGTTGTTGTCCTA
CGTTCTAACCGAAGGCACCAGAGGTCGAGTCGGAGATGTTGTTTTATGTG
CTCCAACGGGTAGTGGAAAAACTTTGGCGTATGCTTTACCTATTGTCCAA
GACGTGCTTGACCGCAGAATGCCTCGCTTACGGGCCATCATCGTGGTTCC
GACGCGAGATCTTGCTGCTCAAGTGTATTCCGTGTTTTCTGCCCTCACGA
AAAAGTTTGGTATCCTTGCATTATGTATTGTTGGCTCGTCTCCGATAGTC
GAAGAAGCCTTAAACGTGCCAAAAGCGGAAATTCTGATCGCAACTCCAGG
TCGGCTCGTTGACCACATCAATAACGGTGATTATCTGAACTTGGGTGATG
TAAGGTACCTTGTTTTAGACGAATCTGATCGACTTCTTGAAGATTCTTAT
CAGGAGTGGATTGATGTTCTAATACCAGCGCTAGGAAAGCAAAAGCAAAC
GTTTAAAGGAGGCGAGAGTGGACGTCCAATGCCACACACTTCATATGGTT
TACTGAATCTTGCGATCCGACCGGATATTTCTATGCGAACGGGATCGTCT
TATTCAGGCCTGTCGCAACCGAACGTGAGAAAGATTCTGGCATCCGCGAC
ACAAACGCGAAACCCAATGCGCCTGCACAAGCTGGACCTGCGCGACGTTT
GTTTCTTCGAACCGATTGGCTCACAGGGGAACCAGACAGGAGCAATTGAT
CTCTCAGAGGAAAAGTACACAGTACCAGCTACAATGACCGAATACGGATG
GATTGTAGAAAATGTTCAGCAGAAACCGTTGGCACTGTTGCAGCTGTTAG
GCTGGATACCATTTGCTTCTGAAGATGAAAAGGTATCACGACGGGTTGCC
AAGGACCGTTCGATTTCGCAGGCAGGAGCAAAACTTGTGTTTACAAACTC
AGTGGATTCCGCTCATCGCCTTTGCAGACTGTTAGAGATTTGCGCACATT
CGCTCGGAAGAAATGGAACTATATTAGAGATGTCCGGAACTTTATCAGCC
AAAAGAAGAAAGTACGTCCTAGATGCGGTGCGCAGAAAAATTTCATCGGA
TGGAGGGAAAGGCCATGACGACAATCCTCCATTCGTGGTGGTAGTCTGCA
GTGACGTGCTTGCGAGAGGAATGGATATCTTGACGGTGGACACCGTCATT
AACTATGATGGCCCCGCCCACATCAGCACATATTTGCACAGAGCTGGGAG
GACAGCAAGAGCAGGGCGAAAAGGAAATGTTTTCACCCTACTCATTGGAA
ACCAGGTGCGACATTTCCGCGCTATGGTATACGAAGCCATGAGAGATGAG
AAAAAGGTGCGGACCATAGATATGAAGATTCAAACCGAACAGGCTTCCCA
GCGGTCACTAATGGTGAATTCACTAGACTCTCTTCGTCGAGTAATGAACA
GCGAACGATATGGCGCCCTTCATCATGACGAAAGCCTGCCCGAATTCATG
CTGTACGCGCTCAATAAGCTCAATAATCGTCGCTCAAATGGTGATTTGTA
CTTCGATTATGAAGAGGAAGAGTCAGACATGAAGAGACGGCGGCTCACGA
TAGACGCTATTTCTGGTGCTGACCAAGACGAAGAAAACGAATTACAAAGC
GAAAGCACATTGCACGAGATTTTGTTTGCACAGATTGGACGGAATTTGCT
TCATCCCGGAGGACATGCACAAGATCGCGTTGTAGATTGA

protein sequence of Ggra7252.t1

>Ggra7252.t1 ID=Ggra7252.t1|Name=Ggra7252.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=630bp
MKSSLSQPKRIQFELCSAEDGGKKSSPDKQLTKKGPGSVLDPRLRGELAS
QLGIRKIFRMQEVLLSYVLTEGTRGRVGDVVLCAPTGSGKTLAYALPIVQ
DVLDRRMPRLRAIIVVPTRDLAAQVYSVFSALTKKFGILALCIVGSSPIV
EEALNVPKAEILIATPGRLVDHINNGDYLNLGDVRYLVLDESDRLLEDSY
QEWIDVLIPALGKQKQTFKGGESGRPMPHTSYGLLNLAIRPDISMRTGSS
YSGLSQPNVRKILASATQTRNPMRLHKLDLRDVCFFEPIGSQGNQTGAID
LSEEKYTVPATMTEYGWIVENVQQKPLALLQLLGWIPFASEDEKVSRRVA
KDRSISQAGAKLVFTNSVDSAHRLCRLLEICAHSLGRNGTILEMSGTLSA
KRRKYVLDAVRRKISSDGGKGHDDNPPFVVVVCSDVLARGMDILTVDTVI
NYDGPAHISTYLHRAGRTARAGRKGNVFTLLIGNQVRHFRAMVYEAMRDE
KKVRTIDMKIQTEQASQRSLMVNSLDSLRRVMNSERYGALHHDESLPEFM
LYALNKLNNRRSNGDLYFDYEEEESDMKRRRLTIDAISGADQDEENELQS
ESTLHEILFAQIGRNLLHPGGHAQDRVVD*

mRNA from alignment at tig00000871_pilon:477612..479501+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7252.t1 ID=Ggra7252.t1|Name=Ggra7252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000871_pilon:477612..479501+ (Gracilaria gracilis GNS1m male)
ATGAAGTCTAGTCTTTCGCAGCCGAAGCGAATCCAGTTTGAGCTATGTTC
TGCAGAAGATGGTGGAAAGAAGTCAAGCCCCGACAAGCAGCTTACAAAGA
AAGGACCGGGTTCCGTGTTGGACCCGCGCCTGCGGGGTGAGCTTGCGTCA
CAACTTGGAATACGGAAGATATTTCGCATGCAAGAAGTGTTGTTGTCCTA
CGTTCTAACCGAAGGCACCAGAGGTCGAGTCGGAGATGTTGTTTTATGTG
CTCCAACGGGTAGTGGAAAAACTTTGGCGTATGCTTTACCTATTGTCCAA
GACGTGCTTGACCGCAGAATGCCTCGCTTACGGGCCATCATCGTGGTTCC
GACGCGAGATCTTGCTGCTCAAGTGTATTCCGTGTTTTCTGCCCTCACGA
AAAAGTTTGGTATCCTTGCATTATGTATTGTTGGCTCGTCTCCGATAGTC
GAAGAAGCCTTAAACGTGCCAAAAGCGGAAATTCTGATCGCAACTCCAGG
TCGGCTCGTTGACCACATCAATAACGGTGATTATCTGAACTTGGGTGATG
TAAGGTACCTTGTTTTAGACGAATCTGATCGACTTCTTGAAGATTCTTAT
CAGGAGTGGATTGATGTTCTAATACCAGCGCTAGGAAAGCAAAAGCAAAC
GTTTAAAGGAGGCGAGAGTGGACGTCCAATGCCACACACTTCATATGGTT
TACTGAATCTTGCGATCCGACCGGATATTTCTATGCGAACGGGATCGTCT
TATTCAGGCCTGTCGCAACCGAACGTGAGAAAGATTCTGGCATCCGCGAC
ACAAACGCGAAACCCAATGCGCCTGCACAAGCTGGACCTGCGCGACGTTT
GTTTCTTCGAACCGATTGGCTCACAGGGGAACCAGACAGGAGCAATTGAT
CTCTCAGAGGAAAAGTACACAGTACCAGCTACAATGACCGAATACGGATG
GATTGTAGAAAATGTTCAGCAGAAACCGTTGGCACTGTTGCAGCTGTTAG
GCTGGATACCATTTGCTTCTGAAGATGAAAAGGTATCACGACGGGTTGCC
AAGGACCGTTCGATTTCGCAGGCAGGAGCAAAACTTGTGTTTACAAACTC
AGTGGATTCCGCTCATCGCCTTTGCAGACTGTTAGAGATTTGCGCACATT
CGCTCGGAAGAAATGGAACTATATTAGAGATGTCCGGAACTTTATCAGCC
AAAAGAAGAAAGTACGTCCTAGATGCGGTGCGCAGAAAAATTTCATCGGA
TGGAGGGAAAGGCCATGACGACAATCCTCCATTCGTGGTGGTAGTCTGCA
GTGACGTGCTTGCGAGAGGAATGGATATCTTGACGGTGGACACCGTCATT
AACTATGATGGCCCCGCCCACATCAGCACATATTTGCACAGAGCTGGGAG
GACAGCAAGAGCAGGGCGAAAAGGAAATGTTTTCACCCTACTCATTGGAA
ACCAGGTGCGACATTTCCGCGCTATGGTATACGAAGCCATGAGAGATGAG
AAAAAGGTGCGGACCATAGATATGAAGATTCAAACCGAACAGGCTTCCCA
GCGGTCACTAATGGTGAATTCACTAGACTCTCTTCGTCGAGTAATGAACA
GCGAACGATATGGCGCCCTTCATCATGACGAAAGCCTGCCCGAATTCATG
CTGTACGCGCTCAATAAGCTCAATAATCGTCGCTCAAATGGTGATTTGTA
CTTCGATTATGAAGAGGAAGAGTCAGACATGAAGAGACGGCGGCTCACGA
TAGACGCTATTTCTGGTGCTGACCAAGACGAAGAAAACGAATTACAAAGC
GAAAGCACATTGCACGAGATTTTGTTTGCACAGATTGGACGGAATTTGCT
TCATCCCGGAGGACATGCACAAGATCGCGTTGTAGATTGA

Coding sequence (CDS) from alignment at tig00000871_pilon:477612..479501+

>Ggra7252.t1 ID=Ggra7252.t1|Name=Ggra7252.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00000871_pilon:477612..479501+ (Gracilaria gracilis GNS1m male)
ATGAAGTCTAGTCTTTCGCAGCCGAAGCGAATCCAGTTTGAGCTATGTTC
TGCAGAAGATGGTGGAAAGAAGTCAAGCCCCGACAAGCAGCTTACAAAGA
AAGGACCGGGTTCCGTGTTGGACCCGCGCCTGCGGGGTGAGCTTGCGTCA
CAACTTGGAATACGGAAGATATTTCGCATGCAAGAAGTGTTGTTGTCCTA
CGTTCTAACCGAAGGCACCAGAGGTCGAGTCGGAGATGTTGTTTTATGTG
CTCCAACGGGTAGTGGAAAAACTTTGGCGTATGCTTTACCTATTGTCCAA
GACGTGCTTGACCGCAGAATGCCTCGCTTACGGGCCATCATCGTGGTTCC
GACGCGAGATCTTGCTGCTCAAGTGTATTCCGTGTTTTCTGCCCTCACGA
AAAAGTTTGGTATCCTTGCATTATGTATTGTTGGCTCGTCTCCGATAGTC
GAAGAAGCCTTAAACGTGCCAAAAGCGGAAATTCTGATCGCAACTCCAGG
TCGGCTCGTTGACCACATCAATAACGGTGATTATCTGAACTTGGGTGATG
TAAGGTACCTTGTTTTAGACGAATCTGATCGACTTCTTGAAGATTCTTAT
CAGGAGTGGATTGATGTTCTAATACCAGCGCTAGGAAAGCAAAAGCAAAC
GTTTAAAGGAGGCGAGAGTGGACGTCCAATGCCACACACTTCATATGGTT
TACTGAATCTTGCGATCCGACCGGATATTTCTATGCGAACGGGATCGTCT
TATTCAGGCCTGTCGCAACCGAACGTGAGAAAGATTCTGGCATCCGCGAC
ACAAACGCGAAACCCAATGCGCCTGCACAAGCTGGACCTGCGCGACGTTT
GTTTCTTCGAACCGATTGGCTCACAGGGGAACCAGACAGGAGCAATTGAT
CTCTCAGAGGAAAAGTACACAGTACCAGCTACAATGACCGAATACGGATG
GATTGTAGAAAATGTTCAGCAGAAACCGTTGGCACTGTTGCAGCTGTTAG
GCTGGATACCATTTGCTTCTGAAGATGAAAAGGTATCACGACGGGTTGCC
AAGGACCGTTCGATTTCGCAGGCAGGAGCAAAACTTGTGTTTACAAACTC
AGTGGATTCCGCTCATCGCCTTTGCAGACTGTTAGAGATTTGCGCACATT
CGCTCGGAAGAAATGGAACTATATTAGAGATGTCCGGAACTTTATCAGCC
AAAAGAAGAAAGTACGTCCTAGATGCGGTGCGCAGAAAAATTTCATCGGA
TGGAGGGAAAGGCCATGACGACAATCCTCCATTCGTGGTGGTAGTCTGCA
GTGACGTGCTTGCGAGAGGAATGGATATCTTGACGGTGGACACCGTCATT
AACTATGATGGCCCCGCCCACATCAGCACATATTTGCACAGAGCTGGGAG
GACAGCAAGAGCAGGGCGAAAAGGAAATGTTTTCACCCTACTCATTGGAA
ACCAGGTGCGACATTTCCGCGCTATGGTATACGAAGCCATGAGAGATGAG
AAAAAGGTGCGGACCATAGATATGAAGATTCAAACCGAACAGGCTTCCCA
GCGGTCACTAATGGTGAATTCACTAGACTCTCTTCGTCGAGTAATGAACA
GCGAACGATATGGCGCCCTTCATCATGACGAAAGCCTGCCCGAATTCATG
CTGTACGCGCTCAATAAGCTCAATAATCGTCGCTCAAATGGTGATTTGTA
CTTCGATTATGAAGAGGAAGAGTCAGACATGAAGAGACGGCGGCTCACGA
TAGACGCTATTTCTGGTGCTGACCAAGACGAAGAAAACGAATTACAAAGC
GAAAGCACATTGCACGAGATTTTGTTTGCACAGATTGGACGGAATTTGCT
TCATCCCGGAGGACATGCACAAGATCGCGTTGTAGATTGA