Ggra7239.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7239.t1
Unique NameGgra7239.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:370648..371607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD15867
Preferred nameRQCD1
PFAMsRcd1
Max annot lvl2759|Eukaryota
KEGG koko:K12606,ko:K13754
KEGG TC2.A.19.4.4
KEGG Pathwayko03018,map03018
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0001932,GO:0001934,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005102,GO:0005154,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007044,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007283,GO:0007346,GO:0007548,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019439,GO:0019899,GO:0019900,GO:0019904,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030014,GO:0030015,GO:0030330,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031570,GO:0031571,GO:0031581,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033135,GO:0033138,GO:0033143,GO:0033144,GO:0033146,GO:0033147,GO:0033554,GO:0034097,GO:0034243,GO:0034248,GO:0034249,GO:0034329,GO:0034330,GO:0034641,GO:0034655,GO:0035556,GO:0035770,GO:0036464,GO:0042058,GO:0042221,GO:0042325,GO:0042327,GO:0042770,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045742,GO:0045786,GO:0045787,GO:0045893,GO:0045930,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046700,GO:0046983,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070851,GO:0070887,GO:0071156,GO:0071158,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901184,GO:1901186,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902680,GO:1902806,GO:1902807,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000325,GO:2000327,GO:2001141
Evalue1.43e-140
EggNOG OGsCOG5209@1|root,KOG3036@2759|Eukaryota
Descriptionpositive regulation of nuclear receptor transcription coactivator activity
COG categoryG
BRITEko00000,ko00001,ko02000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7239Ggra7239Gracilaria gracilis GNS1m malegenetig00000871_pilon 370648..371607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7239.t1Ggra7239.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 370648..371607 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7239.t1.start1Ggra7239.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 370648..370650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7239.t1.CDS1Ggra7239.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 370648..370737 +
Ggra7239.t1.CDS2Ggra7239.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 370819..371607 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7239.t1.exon1Ggra7239.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 370648..370737 +
Ggra7239.t1.exon2Ggra7239.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 370819..371607 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7239.t1.intron1Ggra7239.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 370738..370818 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7239.t1.stop1Ggra7239.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 371605..371607 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7239.t1 ID=Ggra7239.t1|Name=Ggra7239.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MNPRDLNASMKAASEAHVRELVQDLTKPEKRENALLELSKKREAVADLAP
RLWYSLGTIAALLQEIISIYPMLAPPALSAHASNRVCNALALLQCVASHP
LTRTHFLSAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKMDAPDV
INFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDNGLAYICATPE
RFYAVSTVLSNMVTALVEAPSARLLKHVIRCYLRLSDNHRAREALRQCLP
EPLNDVTFATVLEDDPATKKWLLHLLYQLDQAPHVGLQAGVV*
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spliced messenger RNA

>Ggra7239.t1 ID=Ggra7239.t1|Name=Ggra7239.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000871_pilon:370648..371607+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCTCGAGATCTAAACGCCTCAATGAAAGCTGCGAGTGAGGCCCA
TGTGCGAGAGCTCGTCCAGGACCTTACCAAACCGGAAAAGCGAGAAAATG
CTCTGCTCGAGCTCAGCAAGAAGAGGGAAGCAGTCGCTGATCTTGCCCCT
AGGTTGTGGTACAGCCTTGGTACCATCGCGGCACTTCTCCAAGAGATCAT
ATCAATCTACCCGATGCTAGCCCCTCCGGCTCTTTCAGCACATGCAAGCA
ACAGGGTTTGCAATGCCCTTGCCCTTTTGCAATGCGTTGCTTCTCATCCA
CTGACCCGTACCCACTTTCTCTCTGCACATATTCCGCTGTTCTTGTACCC
ATTTTTGAATACCGTTTCAAAGACAAGACCCTTTGAGTATTTGCGCTTGA
CATCACTCGGTGTCATTGGTGCGTTGGTGAAGATGGATGCTCCAGATGTC
ATTAACTTCTTATTGCAAACCGAAATAATTCCCCTCTGTCTTCGTATAAT
GGAGACCGGATCAGAGTTGAGTAAGACCGTCGCTACATTCATTGTCCAGA
AAATATTATTAGACGACAATGGCCTGGCGTATATATGCGCAACTCCGGAG
AGATTCTATGCTGTTTCCACCGTCTTGAGTAATATGGTAACCGCTCTGGT
TGAAGCACCAAGTGCACGACTGTTGAAGCACGTCATACGTTGCTATCTTC
GCCTGTCCGATAATCATCGTGCGAGGGAAGCATTACGCCAATGTCTTCCG
GAGCCACTGAACGACGTCACATTTGCCACAGTATTGGAAGACGATCCCGC
AACGAAAAAATGGCTATTACACTTGCTATATCAGTTAGATCAAGCCCCGC
ATGTTGGACTGCAAGCAGGTGTTGTGTAA
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protein sequence of Ggra7239.t1

>Ggra7239.t1 ID=Ggra7239.t1|Name=Ggra7239.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MNPRDLNASMKAASEAHVRELVQDLTKPEKRENALLELSKKREAVADLAP
RLWYSLGTIAALLQEIISIYPMLAPPALSAHASNRVCNALALLQCVASHP
LTRTHFLSAHIPLFLYPFLNTVSKTRPFEYLRLTSLGVIGALVKMDAPDV
INFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDNGLAYICATPE
RFYAVSTVLSNMVTALVEAPSARLLKHVIRCYLRLSDNHRAREALRQCLP
EPLNDVTFATVLEDDPATKKWLLHLLYQLDQAPHVGLQAGVV*
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mRNA from alignment at tig00000871_pilon:370648..371607+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7239.t1 ID=Ggra7239.t1|Name=Ggra7239.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000871_pilon:370648..371607+ (Gracilaria gracilis GNS1m male)
ATGAACCCTCGAGATCTAAACGCCTCAATGAAAGCTGCGAGTGAGGCCCA
TGTGCGAGAGCTCGTCCAGGACCTTACCAAACCGGAAAAGGTGAGTCATC
CCCTAATTTCTAACTATGAAAAACAAGAAAGCATCAGCTAACCGCTTCTG
GATGCGAATGTAAAATTGCAGCGAGAAAATGCTCTGCTCGAGCTCAGCAA
GAAGAGGGAAGCAGTCGCTGATCTTGCCCCTAGGTTGTGGTACAGCCTTG
GTACCATCGCGGCACTTCTCCAAGAGATCATATCAATCTACCCGATGCTA
GCCCCTCCGGCTCTTTCAGCACATGCAAGCAACAGGGTTTGCAATGCCCT
TGCCCTTTTGCAATGCGTTGCTTCTCATCCACTGACCCGTACCCACTTTC
TCTCTGCACATATTCCGCTGTTCTTGTACCCATTTTTGAATACCGTTTCA
AAGACAAGACCCTTTGAGTATTTGCGCTTGACATCACTCGGTGTCATTGG
TGCGTTGGTGAAGATGGATGCTCCAGATGTCATTAACTTCTTATTGCAAA
CCGAAATAATTCCCCTCTGTCTTCGTATAATGGAGACCGGATCAGAGTTG
AGTAAGACCGTCGCTACATTCATTGTCCAGAAAATATTATTAGACGACAA
TGGCCTGGCGTATATATGCGCAACTCCGGAGAGATTCTATGCTGTTTCCA
CCGTCTTGAGTAATATGGTAACCGCTCTGGTTGAAGCACCAAGTGCACGA
CTGTTGAAGCACGTCATACGTTGCTATCTTCGCCTGTCCGATAATCATCG
TGCGAGGGAAGCATTACGCCAATGTCTTCCGGAGCCACTGAACGACGTCA
CATTTGCCACAGTATTGGAAGACGATCCCGCAACGAAAAAATGGCTATTA
CACTTGCTATATCAGTTAGATCAAGCCCCGCATGTTGGACTGCAAGCAGG
TGTTGTGTAA
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Coding sequence (CDS) from alignment at tig00000871_pilon:370648..371607+

>Ggra7239.t1 ID=Ggra7239.t1|Name=Ggra7239.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000871_pilon:370648..371607+ (Gracilaria gracilis GNS1m male)
ATGAACCCTCGAGATCTAAACGCCTCAATGAAAGCTGCGAGTGAGGCCCA
TGTGCGAGAGCTCGTCCAGGACCTTACCAAACCGGAAAAGCGAGAAAATG
CTCTGCTCGAGCTCAGCAAGAAGAGGGAAGCAGTCGCTGATCTTGCCCCT
AGGTTGTGGTACAGCCTTGGTACCATCGCGGCACTTCTCCAAGAGATCAT
ATCAATCTACCCGATGCTAGCCCCTCCGGCTCTTTCAGCACATGCAAGCA
ACAGGGTTTGCAATGCCCTTGCCCTTTTGCAATGCGTTGCTTCTCATCCA
CTGACCCGTACCCACTTTCTCTCTGCACATATTCCGCTGTTCTTGTACCC
ATTTTTGAATACCGTTTCAAAGACAAGACCCTTTGAGTATTTGCGCTTGA
CATCACTCGGTGTCATTGGTGCGTTGGTGAAGATGGATGCTCCAGATGTC
ATTAACTTCTTATTGCAAACCGAAATAATTCCCCTCTGTCTTCGTATAAT
GGAGACCGGATCAGAGTTGAGTAAGACCGTCGCTACATTCATTGTCCAGA
AAATATTATTAGACGACAATGGCCTGGCGTATATATGCGCAACTCCGGAG
AGATTCTATGCTGTTTCCACCGTCTTGAGTAATATGGTAACCGCTCTGGT
TGAAGCACCAAGTGCACGACTGTTGAAGCACGTCATACGTTGCTATCTTC
GCCTGTCCGATAATCATCGTGCGAGGGAAGCATTACGCCAATGTCTTCCG
GAGCCACTGAACGACGTCACATTTGCCACAGTATTGGAAGACGATCCCGC
AACGAAAAAATGGCTATTACACTTGCTATATCAGTTAGATCAAGCCCCGC
ATGTTGGACTGCAAGCAGGTGTTGTGTAA
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