Ggra7240.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7240.t1
Unique NameGgra7240.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length612
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:371676..373668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S149_21V6.1
PFAMsArfGap
Max annot lvl35493|Streptophyta
KEGG koko:K12486
KEGG Pathwayko04144,map04144
GOsGO:0000003,GO:0001558,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0007275,GO:0008150,GO:0009791,GO:0009838,GO:0009908,GO:0009987,GO:0010227,GO:0012505,GO:0016043,GO:0016192,GO:0022414,GO:0022607,GO:0030135,GO:0030136,GO:0030276,GO:0030308,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034622,GO:0035459,GO:0035652,GO:0040008,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045926,GO:0048367,GO:0048437,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060858,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090567,GO:0090630,GO:0097708,GO:0098791,GO:0099402
Evalue6.87e-38
EggNOG OGsCOG5347@1|root,KOG0703@2759|Eukaryota,37KTR@33090|Viridiplantae,3G8CY@35493|Streptophyta
DescriptionADP-ribosylation factor GTPase-activating protein
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7240Ggra7240Gracilaria gracilis GNS1m malegenetig00000871_pilon 371676..373668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7240.t1Ggra7240.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 371676..373668 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7240.t1.stop1Ggra7240.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 371676..371678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7240.t1.CDS1Ggra7240.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 371676..373449 -
Ggra7240.t1.CDS2Ggra7240.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 373607..373668 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7240.t1.exon1Ggra7240.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 371676..373449 -
Ggra7240.t1.exon2Ggra7240.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 373607..373668 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7240.t1.intron1Ggra7240.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 373450..373606 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7240.t1.start1Ggra7240.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 373666..373668 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7240.t1 ID=Ggra7240.t1|Name=Ggra7240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp
MAERKNPQLDAEHQAILRKMMLLPENKTCADCKGHSPRWASTNLGIFICI
TCSGIHRKLGTHISQVRSITLDTWTPSQIQHFRKFGNAKASHYFEACLPP
DFRRPHSSDSMQMERFIRDKYENKRYITIENGGLGGQTVSRNRSSRLAAR
PNPGSLGPRPTQPMSASRQAAYDSAPTVRKTGTSSMSYGGRFSRPVKPMR
GSQQTPTTRNSFTPNTGGTSAIGRASTLKQLLTMGFPQDVAVKAIEVGDG
DLQRSLDWVLLQDGKSMNQAQSAAPPRRVQKDLLDFDEPSAPITTATVTP
QQSAPKIMATESLISSTAKGTSTEPTPTPLTNRGFADFANFGDFQRTLPS
AVPSKEHSTSLNPHPSSTPKNAPLTSSLDNLYRKSPPKPTTTPPHISPFS
KAMSSLQFPKSSLETVGETGTANTHKNEDSLGLTTFESLSPQNLRLSGKA
VPSMRLTGQQAGVQVPLTFASANEPPPPPPPSEHMLFPGTPDNQPPPPSP
KLESVAKQTSSVQGHGESPEQVQSANSGTTAETREEAPKNDSSEKEDEQE
KEEEEEVDPFAALSMMALSSATSAQKKKKDKKASSLKALEPNSSKGAEVV
QSSINLDELLS*
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spliced messenger RNA

>Ggra7240.t1 ID=Ggra7240.t1|Name=Ggra7240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1836bp|location=Sequence derived from alignment at tig00000871_pilon:371676..373668- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGAGAAAAAACCCTCAGCTTGATGCTGAGCATCAAGCAATACT
CCGCAAGATGATGCTTCTCCCGGAAAACAAAACATGTGCTGATTGCAAAG
GTCATTCTCCCAGGTGGGCCTCCACCAATCTCGGCATCTTCATCTGTATC
ACATGCAGTGGCATTCACAGAAAGCTTGGTACCCATATTTCTCAAGTGAG
GTCCATCACACTTGACACATGGACTCCGAGTCAAATTCAGCATTTCAGGA
AGTTTGGTAATGCTAAGGCATCGCACTACTTTGAAGCGTGTCTCCCTCCC
GATTTTCGGCGTCCACACTCTTCAGATTCCATGCAAATGGAGCGATTCAT
ACGCGATAAGTACGAAAATAAGCGATACATAACTATTGAGAATGGCGGGT
TGGGGGGCCAAACTGTCAGTCGAAACCGATCATCTCGTTTAGCAGCGCGT
CCAAATCCAGGTTCGTTAGGTCCTCGACCCACGCAACCGATGTCTGCGTC
GCGCCAAGCTGCGTATGATTCTGCTCCAACTGTTCGAAAGACAGGCACGT
CGTCAATGAGCTACGGCGGTCGATTTTCACGCCCAGTGAAGCCGATGCGG
GGGTCTCAGCAGACCCCTACCACTAGGAACTCATTTACCCCAAACACAGG
CGGTACCAGTGCGATCGGGCGAGCGAGCACTTTGAAACAACTGTTGACTA
TGGGCTTCCCTCAAGACGTAGCTGTGAAGGCTATCGAGGTTGGAGATGGT
GACCTTCAGAGATCGCTAGATTGGGTTTTGCTGCAAGATGGAAAATCCAT
GAATCAAGCACAAAGTGCCGCACCACCGCGACGGGTTCAGAAAGATCTGC
TTGACTTTGATGAGCCATCAGCTCCAATCACAACAGCGACAGTGACTCCC
CAACAGTCGGCCCCTAAGATAATGGCGACTGAATCGCTGATTTCTTCAAC
TGCAAAGGGTACGTCGACTGAGCCAACCCCAACACCACTGACAAATCGCG
GGTTCGCGGACTTTGCGAACTTCGGCGATTTTCAGCGAACACTTCCTTCC
GCGGTCCCATCAAAAGAACACAGCACTTCTTTAAATCCGCACCCGAGTTC
GACCCCGAAGAATGCTCCGCTCACGTCTTCTCTTGACAATCTGTACAGGA
AGAGCCCCCCAAAGCCGACCACTACACCTCCTCACATTTCGCCTTTTTCG
AAGGCCATGAGCTCCCTTCAATTCCCGAAGTCTTCCCTGGAAACGGTGGG
CGAAACAGGCACAGCTAACACGCACAAGAATGAAGATAGCTTGGGACTCA
CTACGTTTGAATCATTGTCTCCTCAGAATCTGAGGTTATCTGGAAAGGCG
GTCCCTTCGATGCGTTTAACTGGGCAGCAAGCAGGAGTTCAGGTACCCCT
GACTTTCGCCTCTGCAAATGAACCTCCTCCACCACCTCCGCCGTCTGAGC
ATATGCTGTTTCCTGGTACACCAGACAACCAACCCCCACCTCCTTCACCA
AAACTCGAAAGCGTTGCGAAGCAGACTTCATCTGTCCAAGGCCATGGGGA
AAGTCCAGAGCAAGTTCAGAGTGCTAATTCAGGTACGACCGCAGAGACAA
GAGAAGAGGCTCCCAAGAATGACTCAAGCGAGAAAGAGGACGAACAGGAA
AAGGAGGAAGAGGAGGAAGTGGATCCATTTGCCGCGTTGTCAATGATGGC
TTTGAGCAGTGCTACTTCAGCTCAGAAGAAAAAGAAAGATAAGAAAGCAT
CGTCTTTAAAAGCATTAGAGCCTAATTCATCCAAAGGCGCAGAAGTTGTG
CAGAGTAGCATTAATCTAGATGAACTATTGAGTTAG
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protein sequence of Ggra7240.t1

>Ggra7240.t1 ID=Ggra7240.t1|Name=Ggra7240.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=612bp
MAERKNPQLDAEHQAILRKMMLLPENKTCADCKGHSPRWASTNLGIFICI
TCSGIHRKLGTHISQVRSITLDTWTPSQIQHFRKFGNAKASHYFEACLPP
DFRRPHSSDSMQMERFIRDKYENKRYITIENGGLGGQTVSRNRSSRLAAR
PNPGSLGPRPTQPMSASRQAAYDSAPTVRKTGTSSMSYGGRFSRPVKPMR
GSQQTPTTRNSFTPNTGGTSAIGRASTLKQLLTMGFPQDVAVKAIEVGDG
DLQRSLDWVLLQDGKSMNQAQSAAPPRRVQKDLLDFDEPSAPITTATVTP
QQSAPKIMATESLISSTAKGTSTEPTPTPLTNRGFADFANFGDFQRTLPS
AVPSKEHSTSLNPHPSSTPKNAPLTSSLDNLYRKSPPKPTTTPPHISPFS
KAMSSLQFPKSSLETVGETGTANTHKNEDSLGLTTFESLSPQNLRLSGKA
VPSMRLTGQQAGVQVPLTFASANEPPPPPPPSEHMLFPGTPDNQPPPPSP
KLESVAKQTSSVQGHGESPEQVQSANSGTTAETREEAPKNDSSEKEDEQE
KEEEEEVDPFAALSMMALSSATSAQKKKKDKKASSLKALEPNSSKGAEVV
QSSINLDELLS*
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mRNA from alignment at tig00000871_pilon:371676..373668-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7240.t1 ID=Ggra7240.t1|Name=Ggra7240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1993bp|location=Sequence derived from alignment at tig00000871_pilon:371676..373668- (Gracilaria gracilis GNS1m male)
ATGGCCGAGAGAAAAAACCCTCAGCTTGATGCTGAGCATCAAGCAATACT
CCGCAAGATGATGTAAGTTTTCTCATCCATGCCTCCTTATTCATGTTTCT
TGCTCAATCATTGCGGTTCGTCACTTGAAGCATTCCACATGCACTGCACC
CTCCATTGAACACCATGAATATGTCCCGCGAAAACAATTTGCTGACACGA
TGTCATGTTCAACGTCTAGGCTTCTCCCGGAAAACAAAACATGTGCTGAT
TGCAAAGGTCATTCTCCCAGGTGGGCCTCCACCAATCTCGGCATCTTCAT
CTGTATCACATGCAGTGGCATTCACAGAAAGCTTGGTACCCATATTTCTC
AAGTGAGGTCCATCACACTTGACACATGGACTCCGAGTCAAATTCAGCAT
TTCAGGAAGTTTGGTAATGCTAAGGCATCGCACTACTTTGAAGCGTGTCT
CCCTCCCGATTTTCGGCGTCCACACTCTTCAGATTCCATGCAAATGGAGC
GATTCATACGCGATAAGTACGAAAATAAGCGATACATAACTATTGAGAAT
GGCGGGTTGGGGGGCCAAACTGTCAGTCGAAACCGATCATCTCGTTTAGC
AGCGCGTCCAAATCCAGGTTCGTTAGGTCCTCGACCCACGCAACCGATGT
CTGCGTCGCGCCAAGCTGCGTATGATTCTGCTCCAACTGTTCGAAAGACA
GGCACGTCGTCAATGAGCTACGGCGGTCGATTTTCACGCCCAGTGAAGCC
GATGCGGGGGTCTCAGCAGACCCCTACCACTAGGAACTCATTTACCCCAA
ACACAGGCGGTACCAGTGCGATCGGGCGAGCGAGCACTTTGAAACAACTG
TTGACTATGGGCTTCCCTCAAGACGTAGCTGTGAAGGCTATCGAGGTTGG
AGATGGTGACCTTCAGAGATCGCTAGATTGGGTTTTGCTGCAAGATGGAA
AATCCATGAATCAAGCACAAAGTGCCGCACCACCGCGACGGGTTCAGAAA
GATCTGCTTGACTTTGATGAGCCATCAGCTCCAATCACAACAGCGACAGT
GACTCCCCAACAGTCGGCCCCTAAGATAATGGCGACTGAATCGCTGATTT
CTTCAACTGCAAAGGGTACGTCGACTGAGCCAACCCCAACACCACTGACA
AATCGCGGGTTCGCGGACTTTGCGAACTTCGGCGATTTTCAGCGAACACT
TCCTTCCGCGGTCCCATCAAAAGAACACAGCACTTCTTTAAATCCGCACC
CGAGTTCGACCCCGAAGAATGCTCCGCTCACGTCTTCTCTTGACAATCTG
TACAGGAAGAGCCCCCCAAAGCCGACCACTACACCTCCTCACATTTCGCC
TTTTTCGAAGGCCATGAGCTCCCTTCAATTCCCGAAGTCTTCCCTGGAAA
CGGTGGGCGAAACAGGCACAGCTAACACGCACAAGAATGAAGATAGCTTG
GGACTCACTACGTTTGAATCATTGTCTCCTCAGAATCTGAGGTTATCTGG
AAAGGCGGTCCCTTCGATGCGTTTAACTGGGCAGCAAGCAGGAGTTCAGG
TACCCCTGACTTTCGCCTCTGCAAATGAACCTCCTCCACCACCTCCGCCG
TCTGAGCATATGCTGTTTCCTGGTACACCAGACAACCAACCCCCACCTCC
TTCACCAAAACTCGAAAGCGTTGCGAAGCAGACTTCATCTGTCCAAGGCC
ATGGGGAAAGTCCAGAGCAAGTTCAGAGTGCTAATTCAGGTACGACCGCA
GAGACAAGAGAAGAGGCTCCCAAGAATGACTCAAGCGAGAAAGAGGACGA
ACAGGAAAAGGAGGAAGAGGAGGAAGTGGATCCATTTGCCGCGTTGTCAA
TGATGGCTTTGAGCAGTGCTACTTCAGCTCAGAAGAAAAAGAAAGATAAG
AAAGCATCGTCTTTAAAAGCATTAGAGCCTAATTCATCCAAAGGCGCAGA
AGTTGTGCAGAGTAGCATTAATCTAGATGAACTATTGAGTTAG
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Coding sequence (CDS) from alignment at tig00000871_pilon:371676..373668-

>Ggra7240.t1 ID=Ggra7240.t1|Name=Ggra7240.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1836bp|location=Sequence derived from alignment at tig00000871_pilon:371676..373668- (Gracilaria gracilis GNS1m male)
ATGGCCGAGAGAAAAAACCCTCAGCTTGATGCTGAGCATCAAGCAATACT
CCGCAAGATGATGCTTCTCCCGGAAAACAAAACATGTGCTGATTGCAAAG
GTCATTCTCCCAGGTGGGCCTCCACCAATCTCGGCATCTTCATCTGTATC
ACATGCAGTGGCATTCACAGAAAGCTTGGTACCCATATTTCTCAAGTGAG
GTCCATCACACTTGACACATGGACTCCGAGTCAAATTCAGCATTTCAGGA
AGTTTGGTAATGCTAAGGCATCGCACTACTTTGAAGCGTGTCTCCCTCCC
GATTTTCGGCGTCCACACTCTTCAGATTCCATGCAAATGGAGCGATTCAT
ACGCGATAAGTACGAAAATAAGCGATACATAACTATTGAGAATGGCGGGT
TGGGGGGCCAAACTGTCAGTCGAAACCGATCATCTCGTTTAGCAGCGCGT
CCAAATCCAGGTTCGTTAGGTCCTCGACCCACGCAACCGATGTCTGCGTC
GCGCCAAGCTGCGTATGATTCTGCTCCAACTGTTCGAAAGACAGGCACGT
CGTCAATGAGCTACGGCGGTCGATTTTCACGCCCAGTGAAGCCGATGCGG
GGGTCTCAGCAGACCCCTACCACTAGGAACTCATTTACCCCAAACACAGG
CGGTACCAGTGCGATCGGGCGAGCGAGCACTTTGAAACAACTGTTGACTA
TGGGCTTCCCTCAAGACGTAGCTGTGAAGGCTATCGAGGTTGGAGATGGT
GACCTTCAGAGATCGCTAGATTGGGTTTTGCTGCAAGATGGAAAATCCAT
GAATCAAGCACAAAGTGCCGCACCACCGCGACGGGTTCAGAAAGATCTGC
TTGACTTTGATGAGCCATCAGCTCCAATCACAACAGCGACAGTGACTCCC
CAACAGTCGGCCCCTAAGATAATGGCGACTGAATCGCTGATTTCTTCAAC
TGCAAAGGGTACGTCGACTGAGCCAACCCCAACACCACTGACAAATCGCG
GGTTCGCGGACTTTGCGAACTTCGGCGATTTTCAGCGAACACTTCCTTCC
GCGGTCCCATCAAAAGAACACAGCACTTCTTTAAATCCGCACCCGAGTTC
GACCCCGAAGAATGCTCCGCTCACGTCTTCTCTTGACAATCTGTACAGGA
AGAGCCCCCCAAAGCCGACCACTACACCTCCTCACATTTCGCCTTTTTCG
AAGGCCATGAGCTCCCTTCAATTCCCGAAGTCTTCCCTGGAAACGGTGGG
CGAAACAGGCACAGCTAACACGCACAAGAATGAAGATAGCTTGGGACTCA
CTACGTTTGAATCATTGTCTCCTCAGAATCTGAGGTTATCTGGAAAGGCG
GTCCCTTCGATGCGTTTAACTGGGCAGCAAGCAGGAGTTCAGGTACCCCT
GACTTTCGCCTCTGCAAATGAACCTCCTCCACCACCTCCGCCGTCTGAGC
ATATGCTGTTTCCTGGTACACCAGACAACCAACCCCCACCTCCTTCACCA
AAACTCGAAAGCGTTGCGAAGCAGACTTCATCTGTCCAAGGCCATGGGGA
AAGTCCAGAGCAAGTTCAGAGTGCTAATTCAGGTACGACCGCAGAGACAA
GAGAAGAGGCTCCCAAGAATGACTCAAGCGAGAAAGAGGACGAACAGGAA
AAGGAGGAAGAGGAGGAAGTGGATCCATTTGCCGCGTTGTCAATGATGGC
TTTGAGCAGTGCTACTTCAGCTCAGAAGAAAAAGAAAGATAAGAAAGCAT
CGTCTTTAAAAGCATTAGAGCCTAATTCATCCAAAGGCGCAGAAGTTGTG
CAGAGTAGCATTAATCTAGATGAACTATTGAGTTAG
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