Ggra1008.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1008.t1
Unique NameGgra1008.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:383436..384575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1008Ggra1008Gracilaria gracilis GNS1m malegenetig00000027_pilon 383436..384575 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1008.t1.stop1Ggra1008.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000027_pilon 383436..383438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1008.t1.CDS1Ggra1008.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000027_pilon 383436..384575 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1008.t1.exon1Ggra1008.t1.exon1Gracilaria gracilis GNS1m maleexontig00000027_pilon 383436..384575 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1008.t1.start1Ggra1008.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000027_pilon 384573..384575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1008.t1Ggra1008.t1Gracilaria gracilis GNS1m malepolypeptidetig00000027_pilon 383436..384575 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1008.t1 ID=Ggra1008.t1|Name=Ggra1008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MIRISHAIISSLLLASLALAQVPCMGTVTGTVSDNLLVDGIACSVNGATI
TGSVEIINGGSLTTTGATQIFGSVLAASSGDISLLGTTTVSGDVSSEASP
SSVVLVGTDAVLGKVSLKDSGSVDVEGTVLSVLNENSGVVTVTSGTVGGI
SAKLGSGNVILCDANITGSVEIVERTGDLSAEESASCPMSSISGGIVVEK
GTGDVRLVGASFTGGDLSVVEQTGDIVITSAMLSDIGISSLTGSVTLTMI
EADSDVGLGGVTGSISLSDSTVAGDVGIEGSAAISVTNSKFANEGVSVKG
NTGPVVFSMNTELSVEIIENDDVTVSNNNVGVASISVNTGGVSITDNTFV
ELGCVDNNPAPVGSDNTVTLTASGQCAAF*
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spliced messenger RNA

>Ggra1008.t1 ID=Ggra1008.t1|Name=Ggra1008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000027_pilon:383436..384575- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGAATCTCGCACGCAATAATCTCTTCTTTACTTTTGGCTTCGCT
GGCGCTCGCTCAAGTTCCATGTATGGGGACAGTCACAGGCACCGTATCCG
ATAACCTTTTGGTAGATGGAATTGCATGTTCTGTTAACGGAGCTACCATC
ACAGGGTCCGTCGAGATTATTAATGGAGGATCACTTACAACCACAGGCGC
CACTCAGATCTTTGGAAGTGTCCTAGCTGCATCATCCGGTGACATCAGTT
TGTTAGGAACCACTACCGTTTCCGGTGATGTATCCTCTGAAGCTTCTCCT
TCTAGTGTTGTGCTAGTGGGCACGGACGCCGTCCTGGGAAAAGTTTCACT
CAAGGATTCTGGGTCCGTTGATGTCGAAGGAACGGTGCTTTCCGTATTGA
ACGAAAATTCTGGAGTTGTAACCGTAACTAGCGGAACCGTTGGGGGAATC
TCAGCCAAGTTGGGTAGTGGAAACGTGATACTGTGTGACGCCAACATTAC
AGGCTCCGTTGAAATCGTAGAACGCACCGGAGATCTTTCTGCTGAAGAGT
CAGCTTCATGTCCCATGTCATCCATCAGTGGAGGAATCGTAGTAGAGAAG
GGAACAGGGGACGTGAGGTTGGTGGGAGCGAGCTTCACGGGCGGAGATTT
GTCTGTCGTGGAACAGACCGGCGACATTGTCATCACGTCAGCGATGTTGA
GTGACATTGGCATCTCAAGTTTGACTGGTTCCGTAACCCTCACTATGATC
GAGGCAGATAGTGATGTCGGGCTAGGTGGAGTGACTGGAAGCATTTCCTT
ATCAGATTCCACGGTAGCAGGCGACGTGGGAATTGAGGGGTCAGCAGCGA
TATCGGTCACCAACTCCAAGTTTGCCAACGAAGGCGTGTCGGTGAAGGGC
AATACGGGCCCTGTTGTGTTCTCGATGAATACTGAACTTTCTGTGGAAAT
CATCGAGAACGATGACGTGACGGTGTCCAACAACAATGTTGGCGTAGCAT
CGATTTCCGTGAATACGGGGGGTGTTTCGATAACTGACAACACTTTCGTC
GAACTAGGATGCGTCGATAACAATCCGGCTCCCGTTGGCTCCGACAACAC
TGTTACATTGACGGCCTCAGGACAGTGTGCTGCCTTCTGA
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protein sequence of Ggra1008.t1

>Ggra1008.t1 ID=Ggra1008.t1|Name=Ggra1008.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MIRISHAIISSLLLASLALAQVPCMGTVTGTVSDNLLVDGIACSVNGATI
TGSVEIINGGSLTTTGATQIFGSVLAASSGDISLLGTTTVSGDVSSEASP
SSVVLVGTDAVLGKVSLKDSGSVDVEGTVLSVLNENSGVVTVTSGTVGGI
SAKLGSGNVILCDANITGSVEIVERTGDLSAEESASCPMSSISGGIVVEK
GTGDVRLVGASFTGGDLSVVEQTGDIVITSAMLSDIGISSLTGSVTLTMI
EADSDVGLGGVTGSISLSDSTVAGDVGIEGSAAISVTNSKFANEGVSVKG
NTGPVVFSMNTELSVEIIENDDVTVSNNNVGVASISVNTGGVSITDNTFV
ELGCVDNNPAPVGSDNTVTLTASGQCAAF*
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mRNA from alignment at tig00000027_pilon:383436..384575-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1008.t1 ID=Ggra1008.t1|Name=Ggra1008.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000027_pilon:383436..384575- (Gracilaria gracilis GNS1m male)
ATGATTCGAATCTCGCACGCAATAATCTCTTCTTTACTTTTGGCTTCGCT
GGCGCTCGCTCAAGTTCCATGTATGGGGACAGTCACAGGCACCGTATCCG
ATAACCTTTTGGTAGATGGAATTGCATGTTCTGTTAACGGAGCTACCATC
ACAGGGTCCGTCGAGATTATTAATGGAGGATCACTTACAACCACAGGCGC
CACTCAGATCTTTGGAAGTGTCCTAGCTGCATCATCCGGTGACATCAGTT
TGTTAGGAACCACTACCGTTTCCGGTGATGTATCCTCTGAAGCTTCTCCT
TCTAGTGTTGTGCTAGTGGGCACGGACGCCGTCCTGGGAAAAGTTTCACT
CAAGGATTCTGGGTCCGTTGATGTCGAAGGAACGGTGCTTTCCGTATTGA
ACGAAAATTCTGGAGTTGTAACCGTAACTAGCGGAACCGTTGGGGGAATC
TCAGCCAAGTTGGGTAGTGGAAACGTGATACTGTGTGACGCCAACATTAC
AGGCTCCGTTGAAATCGTAGAACGCACCGGAGATCTTTCTGCTGAAGAGT
CAGCTTCATGTCCCATGTCATCCATCAGTGGAGGAATCGTAGTAGAGAAG
GGAACAGGGGACGTGAGGTTGGTGGGAGCGAGCTTCACGGGCGGAGATTT
GTCTGTCGTGGAACAGACCGGCGACATTGTCATCACGTCAGCGATGTTGA
GTGACATTGGCATCTCAAGTTTGACTGGTTCCGTAACCCTCACTATGATC
GAGGCAGATAGTGATGTCGGGCTAGGTGGAGTGACTGGAAGCATTTCCTT
ATCAGATTCCACGGTAGCAGGCGACGTGGGAATTGAGGGGTCAGCAGCGA
TATCGGTCACCAACTCCAAGTTTGCCAACGAAGGCGTGTCGGTGAAGGGC
AATACGGGCCCTGTTGTGTTCTCGATGAATACTGAACTTTCTGTGGAAAT
CATCGAGAACGATGACGTGACGGTGTCCAACAACAATGTTGGCGTAGCAT
CGATTTCCGTGAATACGGGGGGTGTTTCGATAACTGACAACACTTTCGTC
GAACTAGGATGCGTCGATAACAATCCGGCTCCCGTTGGCTCCGACAACAC
TGTTACATTGACGGCCTCAGGACAGTGTGCTGCCTTCTGA
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Coding sequence (CDS) from alignment at tig00000027_pilon:383436..384575-

>Ggra1008.t1 ID=Ggra1008.t1|Name=Ggra1008.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000027_pilon:383436..384575- (Gracilaria gracilis GNS1m male)
ATGATTCGAATCTCGCACGCAATAATCTCTTCTTTACTTTTGGCTTCGCT
GGCGCTCGCTCAAGTTCCATGTATGGGGACAGTCACAGGCACCGTATCCG
ATAACCTTTTGGTAGATGGAATTGCATGTTCTGTTAACGGAGCTACCATC
ACAGGGTCCGTCGAGATTATTAATGGAGGATCACTTACAACCACAGGCGC
CACTCAGATCTTTGGAAGTGTCCTAGCTGCATCATCCGGTGACATCAGTT
TGTTAGGAACCACTACCGTTTCCGGTGATGTATCCTCTGAAGCTTCTCCT
TCTAGTGTTGTGCTAGTGGGCACGGACGCCGTCCTGGGAAAAGTTTCACT
CAAGGATTCTGGGTCCGTTGATGTCGAAGGAACGGTGCTTTCCGTATTGA
ACGAAAATTCTGGAGTTGTAACCGTAACTAGCGGAACCGTTGGGGGAATC
TCAGCCAAGTTGGGTAGTGGAAACGTGATACTGTGTGACGCCAACATTAC
AGGCTCCGTTGAAATCGTAGAACGCACCGGAGATCTTTCTGCTGAAGAGT
CAGCTTCATGTCCCATGTCATCCATCAGTGGAGGAATCGTAGTAGAGAAG
GGAACAGGGGACGTGAGGTTGGTGGGAGCGAGCTTCACGGGCGGAGATTT
GTCTGTCGTGGAACAGACCGGCGACATTGTCATCACGTCAGCGATGTTGA
GTGACATTGGCATCTCAAGTTTGACTGGTTCCGTAACCCTCACTATGATC
GAGGCAGATAGTGATGTCGGGCTAGGTGGAGTGACTGGAAGCATTTCCTT
ATCAGATTCCACGGTAGCAGGCGACGTGGGAATTGAGGGGTCAGCAGCGA
TATCGGTCACCAACTCCAAGTTTGCCAACGAAGGCGTGTCGGTGAAGGGC
AATACGGGCCCTGTTGTGTTCTCGATGAATACTGAACTTTCTGTGGAAAT
CATCGAGAACGATGACGTGACGGTGTCCAACAACAATGTTGGCGTAGCAT
CGATTTCCGTGAATACGGGGGGTGTTTCGATAACTGACAACACTTTCGTC
GAACTAGGATGCGTCGATAACAATCCGGCTCCCGTTGGCTCCGACAACAC
TGTTACATTGACGGCCTCAGGACAGTGTGCTGCCTTCTGA
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