Ggra7228.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7228.t1
Unique NameGgra7228.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Homology
BLAST of Ggra7228.t1 vs. uniprot
Match: A0A2V3ILQ6 (E3 ubiquitin-protein ligase RBX1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILQ6_9FLOR)

HSP 1 Score: 230 bits (586), Expect = 1.450e-76
Identity = 103/109 (94.50%), Postives = 104/109 (95.41%), Query Frame = 0
Query:    1 MEIDTPA-GPAPRPAEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            M+IDTPA GPAPR  EEK KPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPG EDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR
Sbjct:   10 MDIDTPATGPAPRAGEEKPKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGSEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 118          
BLAST of Ggra7228.t1 vs. uniprot
Match: R7QNI1 (RING-box protein 1a n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNI1_CHOCR)

HSP 1 Score: 208 bits (530), Expect = 5.230e-68
Identity = 94/110 (85.45%), Postives = 97/110 (88.18%), Query Frame = 0
Query:    1 MEIDT--PAGPAPRPAEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            MEIDT  P  PA    E K KPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQA Q+AP  EDCNVAWGVCNHAFHFHCISRWLKTR+VCPLDNSEW+FQKYGR
Sbjct:   10 MEIDTGAPVQPAASDPENKPKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQANQSAPPTEDCNVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGR 119          
BLAST of Ggra7228.t1 vs. uniprot
Match: A0A397TZM8 (RING-type domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397TZM8_9GLOM)

HSP 1 Score: 187 bits (476), Expect = 8.710e-60
Identity = 82/111 (73.87%), Postives = 92/111 (82.88%), Query Frame = 0
Query:    1 MEIDTPAGPAPR---PAEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            MEIDTPAG        A++  K RFE+KK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWG+CNHAFHFHCISRWLKTR+VCPLDN EW+FQKYGR
Sbjct:    8 MEIDTPAGSKASGSGKAKDSSKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGMCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGR 118          
BLAST of Ggra7228.t1 vs. uniprot
Match: A0A2A9NR34 (RING-type domain-containing protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NR34_9AGAR)

HSP 1 Score: 187 bits (474), Expect = 1.870e-59
Identity = 80/114 (70.18%), Postives = 90/114 (78.95%), Query Frame = 0
Query:    1 MEIDTPAGPAPRP------AEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            ME+DTP  P  R        E K +PRFE+KK+NAVALWAWD+VVDNCAICRNHIMD CI+CQA Q +   E+CN AWG+CNHAFHFHCISRWLKTR VCPLDN EW+ QKYGR
Sbjct:    7 MEVDTPPQPVKRSIQNMTGTESKNQPRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIDCQANQVSATSEECNAAWGICNHAFHFHCISRWLKTRNVCPLDNREWELQKYGR 120          
BLAST of Ggra7228.t1 vs. uniprot
Match: A0A3B6UA74 (RING-type domain-containing protein n=9 Tax=BOP clade TaxID=359160 RepID=A0A3B6UA74_WHEAT)

HSP 1 Score: 186 bits (473), Expect = 2.580e-59
Identity = 84/115 (73.04%), Postives = 92/115 (80.00%), Query Frame = 0
Query:    1 MEIDTPAGPAPRPAEE------KQKP--RFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYG 107
            ME D P  P P PA +       +KP  RFEIKK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDNSEW+FQKYG
Sbjct:    4 METDAPDAPPPAPAADAGAGSSSRKPGKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 118          
BLAST of Ggra7228.t1 vs. uniprot
Match: A0A2B4RKV1 (RING-box protein 1 n=3 Tax=Anthozoa TaxID=6101 RepID=A0A2B4RKV1_STYPI)

HSP 1 Score: 186 bits (472), Expect = 2.930e-59
Identity = 80/108 (74.07%), Postives = 91/108 (84.26%), Query Frame = 0
Query:    1 MEIDTPAGPAPRPAEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            ME+D+PA P+      K+  RFE+KK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDN EW+FQKYGR
Sbjct:    7 MEVDSPAVPSTSSGSNKK--RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGR 112          
BLAST of Ggra7228.t1 vs. uniprot
Match: A0A0C2WUH1 (RING-type domain-containing protein n=10 Tax=Agaricomycetes incertae sedis TaxID=355688 RepID=A0A0C2WUH1_9AGAM)

HSP 1 Score: 186 bits (471), Expect = 4.430e-59
Identity = 79/111 (71.17%), Postives = 91/111 (81.98%), Query Frame = 0
Query:    1 MEIDTPAGPAPRPAEEKQK---PRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            ME+DTPA     PA +K+K   PRFE+KK+NAVALWAWD+VVDNCAICRNHIMD CI+CQA Q +   ++C  AWG+CNHAFHFHCISRWLKTR VCPLDN EW+ QKYGR
Sbjct:    4 MEVDTPAATTSGPAGKKKKQDGPRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIDCQANQVSATSDECTAAWGICNHAFHFHCISRWLKTRNVCPLDNREWELQKYGR 114          
BLAST of Ggra7228.t1 vs. uniprot
Match: A0A0L0S5F0 (E3 ubiquitin-protein ligase RBX1 n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S5F0_ALLM3)

HSP 1 Score: 186 bits (471), Expect = 5.550e-59
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 0
Query:    1 MEIDTPAGPAPRPAEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            M++DTPA  A   A +  K RFE+KK+NAVALWAWD++VDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDN EW+ QKYGR
Sbjct:   14 MDVDTPAPTAASSAAKGGKKRFEVKKWNAVALWAWDIIVDNCAICRNHIMDLCIECQANQQSATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWELQKYGR 121          
BLAST of Ggra7228.t1 vs. uniprot
Match: U9UZS4 (RING-type domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=U9UZS4_RHIID)

HSP 1 Score: 185 bits (469), Expect = 8.670e-59
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0
Query:    1 MEIDTPAGP-APRPAEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            M+ID PAG  +   A++  K RFE+KK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWG+CNHAFHFHCISRWLKTR+VCPLDN EW+FQKYGR
Sbjct:    5 MDIDQPAGSRSSGKAKDTGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGICNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGR 113          
BLAST of Ggra7228.t1 vs. uniprot
Match: F2U9Q9 (Ring-box protein 1 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U9Q9_SALR5)

HSP 1 Score: 185 bits (470), Expect = 8.960e-59
Identity = 81/114 (71.05%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    9 PAPRPAEEK--------------QKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 108
            PAP PAEE+              +KPRFE+KK+NAVALW WDMVVDNCAICRNHIMD CIECQA Q +   +DC  AWGVCNHAFHFHCISRWLKTR VCPLDN+EW+FQKYGR
Sbjct:   12 PAPAPAEEQPAAAEGKKMETTPDEKPRFEVKKWNAVALWGWDMVVDNCAICRNHIMDPCIECQANQASTTSDDCTAAWGVCNHAFHFHCISRWLKTRHVCPLDNTEWEFQKYGR 125          
The following BLAST results are available for this feature:
BLAST of Ggra7228.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILQ61.450e-7694.50E3 ubiquitin-protein ligase RBX1 n=1 Tax=Gracilari... [more]
R7QNI15.230e-6885.45RING-box protein 1a n=1 Tax=Chondrus crispus TaxID... [more]
A0A397TZM88.710e-6073.87RING-type domain-containing protein n=2 Tax=Gigasp... [more]
A0A2A9NR341.870e-5970.18RING-type domain-containing protein n=1 Tax=Amanit... [more]
A0A3B6UA742.580e-5973.04RING-type domain-containing protein n=9 Tax=BOP cl... [more]
A0A2B4RKV12.930e-5974.07RING-box protein 1 n=3 Tax=Anthozoa TaxID=6101 Rep... [more]
A0A0C2WUH14.430e-5971.17RING-type domain-containing protein n=10 Tax=Agari... [more]
A0A0L0S5F05.550e-5973.15E3 ubiquitin-protein ligase RBX1 n=1 Tax=Allomyces... [more]
U9UZS48.670e-5973.39RING-type domain-containing protein n=9 Tax=Eukary... [more]
F2U9Q98.960e-5971.05Ring-box protein 1 n=1 Tax=Salpingoeca rosetta (st... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 40..98
e-value: 2.1E-25
score: 88.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 11..108
e-value: 7.8E-34
score: 117.8
NoneNo IPR availablePANTHERPTHR11210:SF45OS01G0106800 PROTEINcoord: 13..107
NoneNo IPR availablePANTHERPTHR11210RING BOXcoord: 13..107
NoneNo IPR availableCDDcd16485mRING-H2-C3H2C2D_RBX1coord: 40..101
e-value: 5.73898E-40
score: 125.174
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 20..105
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 42..98
score: 9.376395

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:335630..336121 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7228.t1Ggra7228.t1Gracilaria gracilis GNS1m malemRNAtig00000871_pilon 335630..336121 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7228.t1 ID=Ggra7228.t1|Name=Ggra7228.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MEIDTPAGPAPRPAEEKQKPRFEIKKYNAVALWAWDMVVDNCAICRNHIM
DACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSE
WDFQKYGR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024766Znf_RING_H2
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING