Ggra7244.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7244.t1
Unique NameGgra7244.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:416858..418387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog402777.KB235903_gene2533
PFAMsIon_trans
Max annot lvl1117|Cyanobacteria
KEGG koko:K10716
KEGG TC1.A.1.1,1.A.1.13,1.A.1.17,1.A.1.24,1.A.1.25,1.A.1.6
Evalue6.61e-09
EggNOG OGsCOG2126@1|root,COG2126@2|Bacteria,1G2E0@1117|Cyanobacteria,1H822@1150|Oscillatoriales
DescriptionIon transport protein
COG categoryJ
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7244Ggra7244Gracilaria gracilis GNS1m malegenetig00000871_pilon 416858..418387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7244.t1Ggra7244.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 416858..418387 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7244.t1.stop1Ggra7244.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 416858..416860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7244.t1.CDS1Ggra7244.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 416858..416947 -
Ggra7244.t1.CDS2Ggra7244.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 417019..417188 -
Ggra7244.t1.CDS3Ggra7244.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000871_pilon 417292..417333 -
Ggra7244.t1.CDS4Ggra7244.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000871_pilon 417652..417976 -
Ggra7244.t1.CDS5Ggra7244.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000871_pilon 418073..418387 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7244.t1.exon1Ggra7244.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 416858..416947 -
Ggra7244.t1.exon2Ggra7244.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 417019..417188 -
Ggra7244.t1.exon3Ggra7244.t1.exon3Gracilaria gracilis GNS1m maleexontig00000871_pilon 417292..417333 -
Ggra7244.t1.exon4Ggra7244.t1.exon4Gracilaria gracilis GNS1m maleexontig00000871_pilon 417652..417976 -
Ggra7244.t1.exon5Ggra7244.t1.exon5Gracilaria gracilis GNS1m maleexontig00000871_pilon 418073..418387 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7244.t1.intron1Ggra7244.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 416948..417018 -
Ggra7244.t1.intron2Ggra7244.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000871_pilon 417189..417291 -
Ggra7244.t1.intron3Ggra7244.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000871_pilon 417334..417651 -
Ggra7244.t1.intron4Ggra7244.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000871_pilon 417977..418072 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7244.t1.start1Ggra7244.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 418385..418387 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7244.t1 ID=Ggra7244.t1|Name=Ggra7244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MRRDAWSSLCSALHAQPYQLRSAPSVNSRLRQTSALPRSFLRAVFFFALY
VADGCASTPIRPPALLGDRIRSTTAERPLLFDQVMFAFTAGPLRPAAFLQ
VLPVNPPRIPLPPDQRQVFSAGETPAVRNSYPPGRLPMALELDFVLNHPA
TDGIIALLVVLNCLAFALQTLDVGPMWHQAFRSYENNVSMVFLMEFFGRW
YGKGLSPRFLLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERY
RKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFC
RNCGCLLGKRRFD*
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spliced messenger RNA

>Ggra7244.t1 ID=Ggra7244.t1|Name=Ggra7244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000871_pilon:416858..418387- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCGAGATGCTTGGTCCTCGTTGTGCAGTGCGCTCCACGCGCAGCC
TTACCAGCTCCGTTCCGCACCATCAGTAAATTCGCGTCTGCGCCAGACCT
CCGCGCTACCCCGCAGCTTTCTTCGCGCGGTCTTCTTCTTCGCGCTTTAC
GTCGCAGACGGATGCGCTTCCACTCCTATTCGTCCGCCTGCGCTCCTCGG
AGACCGCATCCGCTCTACGACGGCTGAGCGACCGCTCTTGTTTGATCAAG
TTATGTTTGCGTTTACCGCCGGACCTCTGCGGCCTGCCGCCTTCCTACAG
GTTCTACCTGTTAATCCGCCACGCATTCCGCTCCCACCAGACCAGCGACA
GGTATTCTCGGCGGGCGAAACACCTGCCGTTCGAAATTCATATCCACCGG
GGCGCCTTCCGATGGCTCTTGAGCTTGATTTTGTACTGAACCATCCCGCC
ACCGATGGCATCATAGCGCTCTTGGTAGTCTTGAACTGTCTTGCATTTGC
GCTACAGACTCTAGACGTTGGACCCATGTGGCATCAAGCCTTTAGAAGCT
ATGAGAACAACGTTTCCATGGTGTTTCTCATGGAGTTTTTTGGACGTTGG
TATGGAAAGGGACTTTCTCCTCGATTCCTGCTGACAAGGGGCTTTGGAGA
CGTTAGTCCGTTGACTTCATGGGGAAGGATAATAACTGTCCTAACTGTAT
TGACTGGTGCGGTATTGATCCCCTACAAGCTGTCCGAGATTGAACGCTAT
CGAAAGATCAAACAATCGAAGCGGGAGACTATTCCCATTATGGACAGCCC
ATTATCTATCAACGAAGTGGTCATAAAGTCTTTGTTCGATATGGCTGCAG
AGTGCAAGCAGTGTAATCTCCGTGGTCATCAAAGAGACGCTAGATTCTGC
CGAAACTGTGGCTGTCTGTTAGGGAAAAGGCGATTTGACTGA
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protein sequence of Ggra7244.t1

>Ggra7244.t1 ID=Ggra7244.t1|Name=Ggra7244.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MRRDAWSSLCSALHAQPYQLRSAPSVNSRLRQTSALPRSFLRAVFFFALY
VADGCASTPIRPPALLGDRIRSTTAERPLLFDQVMFAFTAGPLRPAAFLQ
VLPVNPPRIPLPPDQRQVFSAGETPAVRNSYPPGRLPMALELDFVLNHPA
TDGIIALLVVLNCLAFALQTLDVGPMWHQAFRSYENNVSMVFLMEFFGRW
YGKGLSPRFLLTRGFGDVSPLTSWGRIITVLTVLTGAVLIPYKLSEIERY
RKIKQSKRETIPIMDSPLSINEVVIKSLFDMAAECKQCNLRGHQRDARFC
RNCGCLLGKRRFD*
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mRNA from alignment at tig00000871_pilon:416858..418387-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7244.t1 ID=Ggra7244.t1|Name=Ggra7244.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000871_pilon:416858..418387- (Gracilaria gracilis GNS1m male)
ATGCGGCGAGATGCTTGGTCCTCGTTGTGCAGTGCGCTCCACGCGCAGCC
TTACCAGCTCCGTTCCGCACCATCAGTAAATTCGCGTCTGCGCCAGACCT
CCGCGCTACCCCGCAGCTTTCTTCGCGCGGTCTTCTTCTTCGCGCTTTAC
GTCGCAGACGGATGCGCTTCCACTCCTATTCGTCCGCCTGCGCTCCTCGG
AGACCGCATCCGCTCTACGACGGCTGAGCGACCGCTCTTGTTTGATCAAG
TTATGTTTGCGTTTACCGCCGGACCTCTGCGGCCTGCCGCCTTCCTACAG
GTTCTACCTGTTAATGTTCGTTTCTTTCCTTCTTCCAGGATTCGAAGAAC
AATTCTAGTCGCTCGTGTTAGCCCTAACCGACCGAAAGCCACAATCGACG
ACACGGTTCAGCCGCCACGCATTCCGCTCCCACCAGACCAGCGACAGGTA
TTCTCGGCGGGCGAAACACCTGCCGTTCGAAATTCATATCCACCGGGGCG
CCTTCCGATGGCTCTTGAGCTTGATTTTGTACTGAACCATCCCGCCACCG
ATGGCATCATAGCGCTCTTGGTAGTCTTGAACTGTCTTGCATTTGCGCTA
CAGACTCTAGACGTTGGACCCATGTGGCATCAAGCCTTTAGAAGCTATGA
GAACAACGTTTCCATGGTGTTTCTCATGGAGTTTTTTGGACGTTGGTATG
GAAAGGGACTTTCTCCTCGATTCCTGCTGACAAGGGGTATGCTCGTTGAT
TTCATTGCCATCGCCCCCATTGGCTTCGCAGTTGCTGAGCAGTCTGAGTT
GTTCTTTGTCAGAATCCTGCGTCTGACAAGAATCTTACGACTCCAAAGAA
TGATAATGGATACGGAGGCAAGCAGGGGGTTTATGGAACGGATGACCAAC
GCGCAGGCGCGGTTGGCAAGCGTTGGTCTTTCTCTTTTCAGCCTTCTTTA
CGTATCTGCTGGATTGTTTTATCAGGTTGAAAAAGACGTTAACCCAGGAA
TTCGTAACTTCTTCGACGCCTTCTACTTTTCTACTGTTACTCTATTTACT
GTAGGCTTTGGAGACGTTAGTCCGTTGACTTCATGGGGAAGGATAAGTAA
GTTGCGATCTCTAAATGTTGCTACAGTCAAATCTGTGCATCCGATCATAA
CTGACTCATCGTTAACCCCCTTTTGTTTCGCTCCGTTGTCGTAACGCAGT
AACTGTCCTAACTGTATTGACTGGTGCGGTATTGATCCCCTACAAGCTGT
CCGAGATTGAACGCTATCGAAAGATCAAACAATCGAAGCGGGAGACTATT
CCCATTATGGACAGCCCATTATCTATCAACGAAGTGGTCATAAAGTCTTT
GTTCGATATGGCTGCAGAGGTAAGTTGTAGGCTAAGAACTTCGAGAAAAG
ACGGATTACACTAACTCGACTCTTTCGCTGATTCCTGTAGTGCAAGCAGT
GTAATCTCCGTGGTCATCAAAGAGACGCTAGATTCTGCCGAAACTGTGGC
TGTCTGTTAGGGAAAAGGCGATTTGACTGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:416858..418387-

>Ggra7244.t1 ID=Ggra7244.t1|Name=Ggra7244.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000871_pilon:416858..418387- (Gracilaria gracilis GNS1m male)
ATGCGGCGAGATGCTTGGTCCTCGTTGTGCAGTGCGCTCCACGCGCAGCC
TTACCAGCTCCGTTCCGCACCATCAGTAAATTCGCGTCTGCGCCAGACCT
CCGCGCTACCCCGCAGCTTTCTTCGCGCGGTCTTCTTCTTCGCGCTTTAC
GTCGCAGACGGATGCGCTTCCACTCCTATTCGTCCGCCTGCGCTCCTCGG
AGACCGCATCCGCTCTACGACGGCTGAGCGACCGCTCTTGTTTGATCAAG
TTATGTTTGCGTTTACCGCCGGACCTCTGCGGCCTGCCGCCTTCCTACAG
GTTCTACCTGTTAATCCGCCACGCATTCCGCTCCCACCAGACCAGCGACA
GGTATTCTCGGCGGGCGAAACACCTGCCGTTCGAAATTCATATCCACCGG
GGCGCCTTCCGATGGCTCTTGAGCTTGATTTTGTACTGAACCATCCCGCC
ACCGATGGCATCATAGCGCTCTTGGTAGTCTTGAACTGTCTTGCATTTGC
GCTACAGACTCTAGACGTTGGACCCATGTGGCATCAAGCCTTTAGAAGCT
ATGAGAACAACGTTTCCATGGTGTTTCTCATGGAGTTTTTTGGACGTTGG
TATGGAAAGGGACTTTCTCCTCGATTCCTGCTGACAAGGGGCTTTGGAGA
CGTTAGTCCGTTGACTTCATGGGGAAGGATAATAACTGTCCTAACTGTAT
TGACTGGTGCGGTATTGATCCCCTACAAGCTGTCCGAGATTGAACGCTAT
CGAAAGATCAAACAATCGAAGCGGGAGACTATTCCCATTATGGACAGCCC
ATTATCTATCAACGAAGTGGTCATAAAGTCTTTGTTCGATATGGCTGCAG
AGTGCAAGCAGTGTAATCTCCGTGGTCATCAAAGAGACGCTAGATTCTGC
CGAAACTGTGGCTGTCTGTTAGGGAAAAGGCGATTTGACTGA
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