Ggra1016.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1016.t1
Unique Name	Ggra1016.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	616

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:540674..542521 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1016	Ggra1016	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 540674..542521 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1016.t1.start1	Ggra1016.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 540674..540676 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1016.t1.CDS1	Ggra1016.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 540674..542521 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1016.t1.exon1	Ggra1016.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 540674..542521 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1016.t1.stop1	Ggra1016.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 542519..542521 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1016.t1	Ggra1016.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 540674..542521 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:540674..542521+
coding sequence from alignment at tig00000027_pilon:540674..542521+

mRNA sequence

>Ggra1016.t1 ID=Ggra1016.t1|Name=Ggra1016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=616bp
MDSDDENSLEKALALERAVLRYNDINAMINLGRLLLYNEQFVSQRARGLQ
MLERAIKQAQHPFAMYSVADYLLTCKRREDHCRAYSLLERSMKLKENPYV
LTRLGYCYVRGKGVAKDVNVAAQLCERALRLKQEPYIMGCLAWALLNAPN
LHAQKKRALALYKKAIELTSDAEMMNDLGLLYHNGCENLSACTKKASKWY
LRAIQTSEYPSAMYNLAVLLLNNEPSEDQVKRAISLLEDAMKLEEQKDVV
TIVKLAEAYSEHRIDVERALELYETAAIHFNSQRARSALLGAWIDGMGGQ
TIKHTRIQDFCWRDFKQNDDNDSLVVFSMMTWTGTRDNQMDPKKAVQLLT
SNRWTGHGSLSLVLRHDLDKYPHGRKNAERLMKKFDDEIDPCNLKDLESI
VFSERSCDGDKLSALESFRKQRDVPSSLDEITWLVPHLRVGRRILPFDGD
PDWVTNVMRRFSRWKYISSLNLASLLLEIDGKQQKAVAVLEDLMNSDLRV
IAMLNLAYILINDVDGVKKDVGKGMQLLEDAVKETNEVSARAMLANALSE
GPDSDAGDVEKGWKLWCSVEKEVEEEEELRKVRRLISQRSEKKWSALGFR
KGQERTEKFESNGKK*

spliced messenger RNA

>Ggra1016.t1 ID=Ggra1016.t1|Name=Ggra1016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000027_pilon:540674..542521+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTGACGACGAAAACTCGCTTGAGAAAGCACTGGCCCTGGAGCG
AGCGGTACTGCGATACAATGATATCAATGCCATGATCAATTTGGGTCGTT
TGTTACTCTACAACGAACAGTTTGTGTCTCAACGTGCGCGAGGACTTCAA
ATGTTGGAGCGAGCCATTAAGCAGGCACAACACCCGTTTGCCATGTATAG
TGTGGCCGACTATCTTTTGACCTGTAAACGCCGAGAAGATCACTGTCGCG
CTTATTCGCTTCTCGAACGCTCAATGAAACTGAAGGAGAACCCATACGTG
CTTACTCGATTGGGCTACTGTTACGTTCGTGGCAAAGGTGTTGCAAAAGA
TGTTAATGTTGCTGCGCAGCTGTGTGAACGTGCGTTGCGATTGAAACAAG
AGCCTTATATCATGGGCTGCTTGGCCTGGGCCCTGTTGAACGCACCCAAC
TTGCACGCACAGAAGAAAAGAGCTCTTGCGTTGTATAAGAAGGCCATTGA
ACTTACGTCTGACGCAGAGATGATGAACGACTTGGGACTTCTTTATCACA
ACGGATGTGAAAATCTGAGCGCATGTACGAAAAAGGCCTCCAAATGGTAT
CTCCGCGCGATTCAAACATCCGAGTACCCATCAGCAATGTACAATCTGGC
TGTTCTTCTTCTAAACAATGAACCCAGTGAAGACCAGGTCAAAAGGGCTA
TTTCTTTACTTGAAGATGCTATGAAGCTAGAAGAACAGAAAGATGTGGTA
ACGATTGTCAAGCTGGCCGAGGCCTACTCGGAGCACAGAATTGACGTTGA
ACGTGCCCTTGAGCTGTATGAGACCGCAGCAATTCATTTCAATTCACAGA
GAGCCAGATCTGCACTACTTGGAGCATGGATCGACGGCATGGGTGGTCAG
ACTATAAAGCATACTCGTATACAGGATTTTTGCTGGAGAGATTTTAAGCA
AAACGACGACAACGATTCTTTAGTTGTCTTCAGCATGATGACGTGGACCG
GTACACGCGATAATCAAATGGACCCGAAGAAAGCCGTACAACTCTTGACT
TCGAATCGTTGGACAGGGCATGGGTCTCTTTCCTTGGTCTTAAGGCATGA
TTTGGATAAGTATCCTCACGGAAGGAAGAATGCTGAAAGGCTTATGAAGA
AGTTCGATGACGAGATCGACCCATGCAATCTAAAAGATCTGGAATCCATA
GTTTTTAGCGAACGCAGTTGTGATGGTGACAAACTGTCAGCATTGGAGAG
CTTTCGAAAGCAGAGAGACGTGCCGAGCTCACTCGATGAGATCACCTGGT
TGGTTCCTCATCTGAGAGTTGGTCGTCGCATCTTACCGTTTGATGGGGAT
CCAGATTGGGTCACAAATGTTATGAGGAGGTTCAGTCGATGGAAATACAT
CAGTTCTCTAAACCTGGCCAGTCTTTTACTTGAGATTGATGGAAAGCAGC
AGAAAGCGGTTGCAGTTCTAGAAGACCTCATGAACAGCGATTTGAGGGTG
ATCGCTATGCTTAACCTGGCTTATATCCTAATCAACGACGTAGATGGAGT
GAAAAAAGACGTTGGAAAAGGAATGCAATTACTGGAAGATGCGGTGAAAG
AGACAAACGAAGTTTCTGCTCGAGCGATGCTGGCCAATGCTTTGTCCGAA
GGGCCGGATTCGGATGCCGGCGACGTAGAGAAGGGATGGAAACTGTGGTG
CAGCGTGGAGAAAGAAGTGGAGGAAGAGGAAGAGCTTCGCAAAGTTCGAC
GGTTGATATCCCAACGTAGTGAAAAGAAGTGGAGCGCTCTTGGGTTTCGA
AAAGGACAGGAGAGAACGGAAAAGTTTGAATCAAATGGAAAGAAGTGA

protein sequence of Ggra1016.t1

>Ggra1016.t1 ID=Ggra1016.t1|Name=Ggra1016.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=616bp
MDSDDENSLEKALALERAVLRYNDINAMINLGRLLLYNEQFVSQRARGLQ
MLERAIKQAQHPFAMYSVADYLLTCKRREDHCRAYSLLERSMKLKENPYV
LTRLGYCYVRGKGVAKDVNVAAQLCERALRLKQEPYIMGCLAWALLNAPN
LHAQKKRALALYKKAIELTSDAEMMNDLGLLYHNGCENLSACTKKASKWY
LRAIQTSEYPSAMYNLAVLLLNNEPSEDQVKRAISLLEDAMKLEEQKDVV
TIVKLAEAYSEHRIDVERALELYETAAIHFNSQRARSALLGAWIDGMGGQ
TIKHTRIQDFCWRDFKQNDDNDSLVVFSMMTWTGTRDNQMDPKKAVQLLT
SNRWTGHGSLSLVLRHDLDKYPHGRKNAERLMKKFDDEIDPCNLKDLESI
VFSERSCDGDKLSALESFRKQRDVPSSLDEITWLVPHLRVGRRILPFDGD
PDWVTNVMRRFSRWKYISSLNLASLLLEIDGKQQKAVAVLEDLMNSDLRV
IAMLNLAYILINDVDGVKKDVGKGMQLLEDAVKETNEVSARAMLANALSE
GPDSDAGDVEKGWKLWCSVEKEVEEEEELRKVRRLISQRSEKKWSALGFR
KGQERTEKFESNGKK*

mRNA from alignment at tig00000027_pilon:540674..542521+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1016.t1 ID=Ggra1016.t1|Name=Ggra1016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1848bp|location=Sequence derived from alignment at tig00000027_pilon:540674..542521+ (Gracilaria gracilis GNS1m male)
ATGGATTCTGACGACGAAAACTCGCTTGAGAAAGCACTGGCCCTGGAGCG
AGCGGTACTGCGATACAATGATATCAATGCCATGATCAATTTGGGTCGTT
TGTTACTCTACAACGAACAGTTTGTGTCTCAACGTGCGCGAGGACTTCAA
ATGTTGGAGCGAGCCATTAAGCAGGCACAACACCCGTTTGCCATGTATAG
TGTGGCCGACTATCTTTTGACCTGTAAACGCCGAGAAGATCACTGTCGCG
CTTATTCGCTTCTCGAACGCTCAATGAAACTGAAGGAGAACCCATACGTG
CTTACTCGATTGGGCTACTGTTACGTTCGTGGCAAAGGTGTTGCAAAAGA
TGTTAATGTTGCTGCGCAGCTGTGTGAACGTGCGTTGCGATTGAAACAAG
AGCCTTATATCATGGGCTGCTTGGCCTGGGCCCTGTTGAACGCACCCAAC
TTGCACGCACAGAAGAAAAGAGCTCTTGCGTTGTATAAGAAGGCCATTGA
ACTTACGTCTGACGCAGAGATGATGAACGACTTGGGACTTCTTTATCACA
ACGGATGTGAAAATCTGAGCGCATGTACGAAAAAGGCCTCCAAATGGTAT
CTCCGCGCGATTCAAACATCCGAGTACCCATCAGCAATGTACAATCTGGC
TGTTCTTCTTCTAAACAATGAACCCAGTGAAGACCAGGTCAAAAGGGCTA
TTTCTTTACTTGAAGATGCTATGAAGCTAGAAGAACAGAAAGATGTGGTA
ACGATTGTCAAGCTGGCCGAGGCCTACTCGGAGCACAGAATTGACGTTGA
ACGTGCCCTTGAGCTGTATGAGACCGCAGCAATTCATTTCAATTCACAGA
GAGCCAGATCTGCACTACTTGGAGCATGGATCGACGGCATGGGTGGTCAG
ACTATAAAGCATACTCGTATACAGGATTTTTGCTGGAGAGATTTTAAGCA
AAACGACGACAACGATTCTTTAGTTGTCTTCAGCATGATGACGTGGACCG
GTACACGCGATAATCAAATGGACCCGAAGAAAGCCGTACAACTCTTGACT
TCGAATCGTTGGACAGGGCATGGGTCTCTTTCCTTGGTCTTAAGGCATGA
TTTGGATAAGTATCCTCACGGAAGGAAGAATGCTGAAAGGCTTATGAAGA
AGTTCGATGACGAGATCGACCCATGCAATCTAAAAGATCTGGAATCCATA
GTTTTTAGCGAACGCAGTTGTGATGGTGACAAACTGTCAGCATTGGAGAG
CTTTCGAAAGCAGAGAGACGTGCCGAGCTCACTCGATGAGATCACCTGGT
TGGTTCCTCATCTGAGAGTTGGTCGTCGCATCTTACCGTTTGATGGGGAT
CCAGATTGGGTCACAAATGTTATGAGGAGGTTCAGTCGATGGAAATACAT
CAGTTCTCTAAACCTGGCCAGTCTTTTACTTGAGATTGATGGAAAGCAGC
AGAAAGCGGTTGCAGTTCTAGAAGACCTCATGAACAGCGATTTGAGGGTG
ATCGCTATGCTTAACCTGGCTTATATCCTAATCAACGACGTAGATGGAGT
GAAAAAAGACGTTGGAAAAGGAATGCAATTACTGGAAGATGCGGTGAAAG
AGACAAACGAAGTTTCTGCTCGAGCGATGCTGGCCAATGCTTTGTCCGAA
GGGCCGGATTCGGATGCCGGCGACGTAGAGAAGGGATGGAAACTGTGGTG
CAGCGTGGAGAAAGAAGTGGAGGAAGAGGAAGAGCTTCGCAAAGTTCGAC
GGTTGATATCCCAACGTAGTGAAAAGAAGTGGAGCGCTCTTGGGTTTCGA
AAAGGACAGGAGAGAACGGAAAAGTTTGAATCAAATGGAAAGAAGTGA

Coding sequence (CDS) from alignment at tig00000027_pilon:540674..542521+

>Ggra1016.t1 ID=Ggra1016.t1|Name=Ggra1016.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1848bp|location=Sequence derived from alignment at tig00000027_pilon:540674..542521+ (Gracilaria gracilis GNS1m male)
ATGGATTCTGACGACGAAAACTCGCTTGAGAAAGCACTGGCCCTGGAGCG
AGCGGTACTGCGATACAATGATATCAATGCCATGATCAATTTGGGTCGTT
TGTTACTCTACAACGAACAGTTTGTGTCTCAACGTGCGCGAGGACTTCAA
ATGTTGGAGCGAGCCATTAAGCAGGCACAACACCCGTTTGCCATGTATAG
TGTGGCCGACTATCTTTTGACCTGTAAACGCCGAGAAGATCACTGTCGCG
CTTATTCGCTTCTCGAACGCTCAATGAAACTGAAGGAGAACCCATACGTG
CTTACTCGATTGGGCTACTGTTACGTTCGTGGCAAAGGTGTTGCAAAAGA
TGTTAATGTTGCTGCGCAGCTGTGTGAACGTGCGTTGCGATTGAAACAAG
AGCCTTATATCATGGGCTGCTTGGCCTGGGCCCTGTTGAACGCACCCAAC
TTGCACGCACAGAAGAAAAGAGCTCTTGCGTTGTATAAGAAGGCCATTGA
ACTTACGTCTGACGCAGAGATGATGAACGACTTGGGACTTCTTTATCACA
ACGGATGTGAAAATCTGAGCGCATGTACGAAAAAGGCCTCCAAATGGTAT
CTCCGCGCGATTCAAACATCCGAGTACCCATCAGCAATGTACAATCTGGC
TGTTCTTCTTCTAAACAATGAACCCAGTGAAGACCAGGTCAAAAGGGCTA
TTTCTTTACTTGAAGATGCTATGAAGCTAGAAGAACAGAAAGATGTGGTA
ACGATTGTCAAGCTGGCCGAGGCCTACTCGGAGCACAGAATTGACGTTGA
ACGTGCCCTTGAGCTGTATGAGACCGCAGCAATTCATTTCAATTCACAGA
GAGCCAGATCTGCACTACTTGGAGCATGGATCGACGGCATGGGTGGTCAG
ACTATAAAGCATACTCGTATACAGGATTTTTGCTGGAGAGATTTTAAGCA
AAACGACGACAACGATTCTTTAGTTGTCTTCAGCATGATGACGTGGACCG
GTACACGCGATAATCAAATGGACCCGAAGAAAGCCGTACAACTCTTGACT
TCGAATCGTTGGACAGGGCATGGGTCTCTTTCCTTGGTCTTAAGGCATGA
TTTGGATAAGTATCCTCACGGAAGGAAGAATGCTGAAAGGCTTATGAAGA
AGTTCGATGACGAGATCGACCCATGCAATCTAAAAGATCTGGAATCCATA
GTTTTTAGCGAACGCAGTTGTGATGGTGACAAACTGTCAGCATTGGAGAG
CTTTCGAAAGCAGAGAGACGTGCCGAGCTCACTCGATGAGATCACCTGGT
TGGTTCCTCATCTGAGAGTTGGTCGTCGCATCTTACCGTTTGATGGGGAT
CCAGATTGGGTCACAAATGTTATGAGGAGGTTCAGTCGATGGAAATACAT
CAGTTCTCTAAACCTGGCCAGTCTTTTACTTGAGATTGATGGAAAGCAGC
AGAAAGCGGTTGCAGTTCTAGAAGACCTCATGAACAGCGATTTGAGGGTG
ATCGCTATGCTTAACCTGGCTTATATCCTAATCAACGACGTAGATGGAGT
GAAAAAAGACGTTGGAAAAGGAATGCAATTACTGGAAGATGCGGTGAAAG
AGACAAACGAAGTTTCTGCTCGAGCGATGCTGGCCAATGCTTTGTCCGAA
GGGCCGGATTCGGATGCCGGCGACGTAGAGAAGGGATGGAAACTGTGGTG
CAGCGTGGAGAAAGAAGTGGAGGAAGAGGAAGAGCTTCGCAAAGTTCGAC
GGTTGATATCCCAACGTAGTGAAAAGAAGTGGAGCGCTCTTGGGTTTCGA
AAAGGACAGGAGAGAACGGAAAAGTTTGAATCAAATGGAAAGAAGTGA