Ggra1079.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1079.t1
Unique NameGgra1079.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:146664..148202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705635.1
Preferred nameUBL7
PFAMsUBA,ubiquitin
Max annot lvl2759|Eukaryota
KEGG koko:K04523
KEGG Pathwayko04141,map04141
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010605,GO:0016043,GO:0019222,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0031593,GO:0033554,GO:0034976,GO:0036503,GO:0042176,GO:0042177,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048519,GO:0050789,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Evalue2.26e-103
EggNOG OGsCOG5272@1|root,KOG0010@2759|Eukaryota
Descriptionnegative regulation of store-operated calcium channel activity
COG categoryO
BRITEko00000,ko00001,ko03051,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1079Ggra1079Gracilaria gracilis GNS1m malegenetig00000868_pilon 146664..148202 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1079.t1.stop1Ggra1079.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 146664..146666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1079.t1.CDS1Ggra1079.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 146664..148202 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1079.t1.exon1Ggra1079.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 146664..148202 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1079.t1.start1Ggra1079.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 148200..148202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1079.t1Ggra1079.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 146664..148202 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1079.t1 ID=Ggra1079.t1|Name=Ggra1079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=513bp
MPLSIKAKCFNGQSYDLTLDSPSSTVTDLQSTISTVSGITPDRQTILFKG
QVLEPGSALADYSLSDGHIISVVRRIGKSSKSTASRPASSKPAPTPAQAT
QTAPTQQDTGADAPQPPSLEDMMRSLNMGAQGSSGLGGGGGGGGGGGTGA
GPMPDLSALLGGGADAGAAGPGGMEQLFAQLPQMMNGFLNTNMLQDYLND
PDKQEQSRDAILNNPFMKKLLESDPEFQNVVSDPAKWRASMDAAKSLFKV
GDKPEGDGEADESASRSIPDEGKTREATKKTAADLAPPGINIKKLSESYG
HALGQSLINSGLGLDPELVINGLRSAVQGKAFPMSLPDYERSMATLQNIA
SEFLTKANLEDANNFFAEVKQAGEAIVLEDGKVAYEKGDEEVDSSQPVAD
EKSTVLVIVTARLLDGRHFFTCPAADESGESVHPLTLELATAPPALAKGI
VGMHENESRLLYVHPTACDGMSDMFGDLLPPNALLIFDLQLVSANAPEED
SVGEAYYNKASS*
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spliced messenger RNA

>Ggra1079.t1 ID=Ggra1079.t1|Name=Ggra1079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000868_pilon:146664..148202- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTCTCCATTAAGGCAAAGTGCTTTAATGGCCAATCGTATGACCT
CACCCTGGACTCACCTTCCTCCACCGTCACCGATCTACAATCCACCATTT
CCACCGTGTCAGGTATCACCCCCGACCGCCAAACCATTCTCTTCAAGGGT
CAGGTGCTCGAACCAGGATCCGCTCTAGCCGACTATTCACTCTCTGACGG
GCACATCATCAGCGTCGTGCGCCGAATCGGCAAGTCATCCAAGAGCACAG
CCTCCAGGCCCGCGTCTTCAAAGCCTGCCCCTACCCCCGCTCAAGCCACA
CAGACTGCACCCACACAACAGGACACAGGTGCCGATGCGCCGCAGCCACC
CTCACTCGAGGATATGATGCGCTCGCTCAATATGGGCGCTCAAGGCTCCT
CTGGTCTCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCACTGGAGCC
GGGCCTATGCCTGACCTGAGCGCGCTTCTTGGTGGCGGTGCGGATGCCGG
CGCGGCCGGACCGGGTGGTATGGAGCAGCTATTTGCACAACTGCCGCAAA
TGATGAACGGCTTCCTCAACACTAACATGTTACAGGATTACCTTAACGAT
CCGGACAAACAGGAGCAGAGTCGTGATGCTATCTTGAACAATCCGTTTAT
GAAGAAGTTGCTGGAAAGCGACCCCGAGTTCCAGAACGTCGTCAGCGATC
CGGCCAAATGGCGCGCTAGTATGGACGCGGCGAAGAGTTTGTTCAAGGTG
GGCGACAAGCCTGAGGGAGATGGCGAGGCCGATGAAAGCGCTTCAAGGTC
GATACCTGATGAAGGGAAGACCAGGGAGGCCACCAAGAAGACGGCGGCAG
ACTTGGCGCCGCCTGGAATAAATATCAAGAAGCTCTCTGAGTCGTACGGA
CATGCGCTGGGACAATCTCTTATTAACTCGGGGCTTGGACTGGATCCGGA
ACTGGTTATAAATGGGTTGAGAAGCGCCGTTCAAGGAAAGGCGTTCCCCA
TGTCGTTACCGGACTACGAGCGGTCGATGGCAACCTTGCAGAACATCGCG
TCGGAGTTCCTGACAAAGGCGAACCTCGAAGACGCTAACAACTTTTTCGC
AGAGGTGAAGCAGGCCGGCGAGGCGATAGTTTTGGAGGACGGTAAGGTCG
CATACGAGAAGGGCGATGAGGAGGTGGACAGCTCGCAGCCGGTGGCGGAT
GAGAAATCGACGGTTTTGGTGATCGTGACTGCTAGGCTACTGGACGGGCG
GCATTTCTTCACGTGCCCGGCGGCGGACGAGTCGGGCGAGTCTGTGCACC
CTCTGACACTGGAGCTGGCGACGGCGCCGCCGGCGTTGGCGAAGGGCATT
GTGGGCATGCACGAGAACGAGTCGCGACTGCTTTACGTGCATCCTACGGC
GTGCGATGGCATGTCGGACATGTTCGGCGATCTGCTGCCGCCGAACGCGC
TGCTGATATTCGACCTGCAATTGGTGAGCGCGAACGCACCGGAGGAGGAC
AGCGTGGGCGAGGCGTACTACAATAAGGCGAGTTCGTAG
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protein sequence of Ggra1079.t1

>Ggra1079.t1 ID=Ggra1079.t1|Name=Ggra1079.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=513bp
MPLSIKAKCFNGQSYDLTLDSPSSTVTDLQSTISTVSGITPDRQTILFKG
QVLEPGSALADYSLSDGHIISVVRRIGKSSKSTASRPASSKPAPTPAQAT
QTAPTQQDTGADAPQPPSLEDMMRSLNMGAQGSSGLGGGGGGGGGGGTGA
GPMPDLSALLGGGADAGAAGPGGMEQLFAQLPQMMNGFLNTNMLQDYLND
PDKQEQSRDAILNNPFMKKLLESDPEFQNVVSDPAKWRASMDAAKSLFKV
GDKPEGDGEADESASRSIPDEGKTREATKKTAADLAPPGINIKKLSESYG
HALGQSLINSGLGLDPELVINGLRSAVQGKAFPMSLPDYERSMATLQNIA
SEFLTKANLEDANNFFAEVKQAGEAIVLEDGKVAYEKGDEEVDSSQPVAD
EKSTVLVIVTARLLDGRHFFTCPAADESGESVHPLTLELATAPPALAKGI
VGMHENESRLLYVHPTACDGMSDMFGDLLPPNALLIFDLQLVSANAPEED
SVGEAYYNKASS*
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mRNA from alignment at tig00000868_pilon:146664..148202-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1079.t1 ID=Ggra1079.t1|Name=Ggra1079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00000868_pilon:146664..148202- (Gracilaria gracilis GNS1m male)
ATGCCTCTCTCCATTAAGGCAAAGTGCTTTAATGGCCAATCGTATGACCT
CACCCTGGACTCACCTTCCTCCACCGTCACCGATCTACAATCCACCATTT
CCACCGTGTCAGGTATCACCCCCGACCGCCAAACCATTCTCTTCAAGGGT
CAGGTGCTCGAACCAGGATCCGCTCTAGCCGACTATTCACTCTCTGACGG
GCACATCATCAGCGTCGTGCGCCGAATCGGCAAGTCATCCAAGAGCACAG
CCTCCAGGCCCGCGTCTTCAAAGCCTGCCCCTACCCCCGCTCAAGCCACA
CAGACTGCACCCACACAACAGGACACAGGTGCCGATGCGCCGCAGCCACC
CTCACTCGAGGATATGATGCGCTCGCTCAATATGGGCGCTCAAGGCTCCT
CTGGTCTCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCACTGGAGCC
GGGCCTATGCCTGACCTGAGCGCGCTTCTTGGTGGCGGTGCGGATGCCGG
CGCGGCCGGACCGGGTGGTATGGAGCAGCTATTTGCACAACTGCCGCAAA
TGATGAACGGCTTCCTCAACACTAACATGTTACAGGATTACCTTAACGAT
CCGGACAAACAGGAGCAGAGTCGTGATGCTATCTTGAACAATCCGTTTAT
GAAGAAGTTGCTGGAAAGCGACCCCGAGTTCCAGAACGTCGTCAGCGATC
CGGCCAAATGGCGCGCTAGTATGGACGCGGCGAAGAGTTTGTTCAAGGTG
GGCGACAAGCCTGAGGGAGATGGCGAGGCCGATGAAAGCGCTTCAAGGTC
GATACCTGATGAAGGGAAGACCAGGGAGGCCACCAAGAAGACGGCGGCAG
ACTTGGCGCCGCCTGGAATAAATATCAAGAAGCTCTCTGAGTCGTACGGA
CATGCGCTGGGACAATCTCTTATTAACTCGGGGCTTGGACTGGATCCGGA
ACTGGTTATAAATGGGTTGAGAAGCGCCGTTCAAGGAAAGGCGTTCCCCA
TGTCGTTACCGGACTACGAGCGGTCGATGGCAACCTTGCAGAACATCGCG
TCGGAGTTCCTGACAAAGGCGAACCTCGAAGACGCTAACAACTTTTTCGC
AGAGGTGAAGCAGGCCGGCGAGGCGATAGTTTTGGAGGACGGTAAGGTCG
CATACGAGAAGGGCGATGAGGAGGTGGACAGCTCGCAGCCGGTGGCGGAT
GAGAAATCGACGGTTTTGGTGATCGTGACTGCTAGGCTACTGGACGGGCG
GCATTTCTTCACGTGCCCGGCGGCGGACGAGTCGGGCGAGTCTGTGCACC
CTCTGACACTGGAGCTGGCGACGGCGCCGCCGGCGTTGGCGAAGGGCATT
GTGGGCATGCACGAGAACGAGTCGCGACTGCTTTACGTGCATCCTACGGC
GTGCGATGGCATGTCGGACATGTTCGGCGATCTGCTGCCGCCGAACGCGC
TGCTGATATTCGACCTGCAATTGGTGAGCGCGAACGCACCGGAGGAGGAC
AGCGTGGGCGAGGCGTACTACAATAAGGCGAGTTCGTAG
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Coding sequence (CDS) from alignment at tig00000868_pilon:146664..148202-

>Ggra1079.t1 ID=Ggra1079.t1|Name=Ggra1079.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00000868_pilon:146664..148202- (Gracilaria gracilis GNS1m male)
ATGCCTCTCTCCATTAAGGCAAAGTGCTTTAATGGCCAATCGTATGACCT
CACCCTGGACTCACCTTCCTCCACCGTCACCGATCTACAATCCACCATTT
CCACCGTGTCAGGTATCACCCCCGACCGCCAAACCATTCTCTTCAAGGGT
CAGGTGCTCGAACCAGGATCCGCTCTAGCCGACTATTCACTCTCTGACGG
GCACATCATCAGCGTCGTGCGCCGAATCGGCAAGTCATCCAAGAGCACAG
CCTCCAGGCCCGCGTCTTCAAAGCCTGCCCCTACCCCCGCTCAAGCCACA
CAGACTGCACCCACACAACAGGACACAGGTGCCGATGCGCCGCAGCCACC
CTCACTCGAGGATATGATGCGCTCGCTCAATATGGGCGCTCAAGGCTCCT
CTGGTCTCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCACTGGAGCC
GGGCCTATGCCTGACCTGAGCGCGCTTCTTGGTGGCGGTGCGGATGCCGG
CGCGGCCGGACCGGGTGGTATGGAGCAGCTATTTGCACAACTGCCGCAAA
TGATGAACGGCTTCCTCAACACTAACATGTTACAGGATTACCTTAACGAT
CCGGACAAACAGGAGCAGAGTCGTGATGCTATCTTGAACAATCCGTTTAT
GAAGAAGTTGCTGGAAAGCGACCCCGAGTTCCAGAACGTCGTCAGCGATC
CGGCCAAATGGCGCGCTAGTATGGACGCGGCGAAGAGTTTGTTCAAGGTG
GGCGACAAGCCTGAGGGAGATGGCGAGGCCGATGAAAGCGCTTCAAGGTC
GATACCTGATGAAGGGAAGACCAGGGAGGCCACCAAGAAGACGGCGGCAG
ACTTGGCGCCGCCTGGAATAAATATCAAGAAGCTCTCTGAGTCGTACGGA
CATGCGCTGGGACAATCTCTTATTAACTCGGGGCTTGGACTGGATCCGGA
ACTGGTTATAAATGGGTTGAGAAGCGCCGTTCAAGGAAAGGCGTTCCCCA
TGTCGTTACCGGACTACGAGCGGTCGATGGCAACCTTGCAGAACATCGCG
TCGGAGTTCCTGACAAAGGCGAACCTCGAAGACGCTAACAACTTTTTCGC
AGAGGTGAAGCAGGCCGGCGAGGCGATAGTTTTGGAGGACGGTAAGGTCG
CATACGAGAAGGGCGATGAGGAGGTGGACAGCTCGCAGCCGGTGGCGGAT
GAGAAATCGACGGTTTTGGTGATCGTGACTGCTAGGCTACTGGACGGGCG
GCATTTCTTCACGTGCCCGGCGGCGGACGAGTCGGGCGAGTCTGTGCACC
CTCTGACACTGGAGCTGGCGACGGCGCCGCCGGCGTTGGCGAAGGGCATT
GTGGGCATGCACGAGAACGAGTCGCGACTGCTTTACGTGCATCCTACGGC
GTGCGATGGCATGTCGGACATGTTCGGCGATCTGCTGCCGCCGAACGCGC
TGCTGATATTCGACCTGCAATTGGTGAGCGCGAACGCACCGGAGGAGGAC
AGCGTGGGCGAGGCGTACTACAATAAGGCGAGTTCGTAG
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