Ggra1077.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1077.t1
Unique Name	Ggra1077.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	572

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000868_pilon	contig	tig00000868_pilon:141770..143485 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ20835
Preferred name	DWF1
PFAMs	FAD_binding_4
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00522,RC01887,RC02419
KEGG ko	ko:K09828
KEGG Reaction	R01457,R03689,R05703,R07488,R07493,R07498,R07499,R07507,R11096
KEGG Pathway	ko00100,ko01100,ko01110,map00100,map01100,map01110
KEGG Module	M00101
GOs	GO:0000902,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006629,GO:0006694,GO:0006725,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0009653,GO:0009698,GO:0009808,GO:0009826,GO:0009832,GO:0009834,GO:0009987,GO:0010817,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016128,GO:0016129,GO:0016131,GO:0016132,GO:0019748,GO:0031090,GO:0031224,GO:0032502,GO:0032989,GO:0040007,GO:0042445,GO:0042446,GO:0042546,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0060560,GO:0065007,GO:0065008,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0098588,GO:0098805,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Evalue	3.95e-184
EggNOG OGs	COG0277@1\|root,KOG1262@2759\|Eukaryota,37Q6T@33090\|Viridiplantae,3GC89@35493\|Streptophyta
EC	1.3.1.72
Description	Delta(24)-sterol
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1077	Ggra1077	Gracilaria gracilis GNS1m male	gene	tig00000868_pilon 141770..143485 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1077.t1.start1	Ggra1077.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000868_pilon 141770..141772 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1077.t1.CDS1	Ggra1077.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000868_pilon 141770..143485 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1077.t1.exon1	Ggra1077.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000868_pilon 141770..143485 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1077.t1.stop1	Ggra1077.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000868_pilon 143483..143485 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1077.t1	Ggra1077.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000868_pilon 141770..143485 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000868_pilon:141770..143485+
coding sequence from alignment at tig00000868_pilon:141770..143485+

mRNA sequence

>Ggra1077.t1 ID=Ggra1077.t1|Name=Ggra1077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=572bp
MSDTSLKADEKEQTGNWWWNPESDPRPICHHPRAPFHLVDFLMQFRWIVI
IPIVLPLSFIWARLHLLRAWIKSLIRGQATIRKHLDRVERIREALAKHRP
GDHGLVCTARPSFWSVTNRDSAYKRGSRYEVDLSDLADVVHVDMDRMIVK
MEPYVTMGYITATLLKMGVCIPIVPEYDDLTVGGLVCGYGIEGSSHKYGL
FYDEVVSMEIVLAGGRTVTATRDNEYSDLFHAIPWSYGAIGMLVGIEMRI
IRVKPYMKVTYYPVAGTIEEMCKAWNHFLVPTDKPWAEYVEGLMYSSNRG
VIMTADYVEEEEAKHGKINRMGYWFKPWFHKHVKEAILDKTVDGSPVVEY
VPTRDYYHRHTRSLYWEADLLVPMGNHVLFRWFLGWLMPPRVSFLKLTTF
GKMWEYYTSRFVAQDILVPLRKTAECMELMHDEYDIYPLWLCPHRVFKTR
KGTMLDCEEDYDTGELNQGDTEEAQMYTDLGIWYTPGHILRKETFDNAAA
SHKLEQWLIKNHGYQTLYAISELNEEDFWKMFDKTLYQKCREKYKAQDTF
MDVYYKVGRKNTSASALAANK*

spliced messenger RNA

>Ggra1077.t1 ID=Ggra1077.t1|Name=Ggra1077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000868_pilon:141770..143485+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGATACCTCACTTAAAGCTGATGAGAAAGAGCAAACTGGGAACTG
GTGGTGGAACCCTGAGTCTGATCCACGACCAATATGTCATCACCCACGTG
CTCCCTTCCACCTCGTAGACTTCTTAATGCAATTTCGATGGATAGTTATA
ATTCCCATTGTTCTACCATTGTCCTTTATCTGGGCTCGCCTTCATTTGCT
ACGAGCATGGATCAAGTCATTGATTCGCGGCCAGGCAACAATTCGCAAGC
ATCTCGATCGTGTTGAACGCATACGTGAGGCGTTGGCAAAGCACCGCCCT
GGTGATCATGGGTTGGTATGTACCGCTCGACCGTCGTTTTGGAGCGTTAC
AAATCGCGACTCGGCGTACAAACGTGGTTCTCGCTATGAAGTGGACCTTT
CGGATTTAGCAGATGTTGTCCACGTAGACATGGATCGCATGATTGTGAAG
ATGGAACCATACGTGACGATGGGGTATATTACGGCCACTCTGTTGAAGAT
GGGCGTCTGCATCCCAATTGTCCCAGAATACGATGACCTCACTGTTGGTG
GGTTAGTATGTGGATACGGCATCGAAGGCTCTAGTCATAAGTATGGTCTC
TTCTATGACGAAGTTGTTTCAATGGAAATCGTCCTAGCTGGAGGACGTAC
GGTAACCGCCACCCGCGATAACGAGTACAGTGACTTATTCCACGCTATCC
CTTGGTCCTACGGTGCGATAGGTATGTTGGTAGGCATTGAAATGCGTATC
ATAAGAGTGAAACCGTACATGAAAGTAACATATTATCCCGTGGCGGGAAC
TATCGAGGAAATGTGTAAGGCGTGGAATCATTTTCTTGTTCCCACCGACA
AGCCTTGGGCAGAATACGTGGAAGGATTGATGTATAGCTCCAACCGCGGG
GTGATAATGACTGCTGATTACGTTGAAGAAGAAGAAGCCAAGCACGGAAA
GATAAACCGTATGGGCTACTGGTTCAAACCATGGTTTCACAAACATGTCA
AAGAAGCCATTCTAGACAAAACTGTAGATGGTTCGCCTGTTGTTGAATAT
GTGCCCACTAGAGACTACTACCATCGACATACGAGAAGTCTCTACTGGGA
AGCAGATTTGCTTGTTCCAATGGGAAACCATGTCTTGTTCCGATGGTTCC
TGGGATGGCTTATGCCGCCAAGGGTGAGCTTTTTGAAGCTAACAACGTTC
GGGAAAATGTGGGAGTACTACACGTCCCGTTTTGTAGCGCAAGATATCCT
TGTTCCACTGCGAAAGACTGCTGAGTGTATGGAGCTGATGCATGATGAGT
ATGATATTTACCCACTGTGGTTGTGTCCGCATCGTGTTTTCAAGACACGA
AAGGGGACCATGTTGGACTGTGAGGAAGATTACGATACAGGTGAATTGAA
CCAAGGAGACACAGAAGAAGCACAAATGTATACGGATCTGGGTATTTGGT
ACACACCAGGTCATATCCTTCGAAAAGAAACGTTCGACAATGCGGCCGCG
AGTCACAAGCTGGAACAATGGCTCATTAAGAACCATGGTTATCAAACTCT
GTATGCTATTTCCGAACTGAACGAAGAAGACTTCTGGAAAATGTTCGACA
AAACTCTGTATCAGAAGTGTAGGGAGAAGTACAAAGCCCAGGACACTTTT
ATGGACGTATACTATAAAGTAGGTAGAAAGAACACCAGCGCTTCAGCACT
CGCAGCGAACAAATGA

protein sequence of Ggra1077.t1

>Ggra1077.t1 ID=Ggra1077.t1|Name=Ggra1077.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=572bp
MSDTSLKADEKEQTGNWWWNPESDPRPICHHPRAPFHLVDFLMQFRWIVI
IPIVLPLSFIWARLHLLRAWIKSLIRGQATIRKHLDRVERIREALAKHRP
GDHGLVCTARPSFWSVTNRDSAYKRGSRYEVDLSDLADVVHVDMDRMIVK
MEPYVTMGYITATLLKMGVCIPIVPEYDDLTVGGLVCGYGIEGSSHKYGL
FYDEVVSMEIVLAGGRTVTATRDNEYSDLFHAIPWSYGAIGMLVGIEMRI
IRVKPYMKVTYYPVAGTIEEMCKAWNHFLVPTDKPWAEYVEGLMYSSNRG
VIMTADYVEEEEAKHGKINRMGYWFKPWFHKHVKEAILDKTVDGSPVVEY
VPTRDYYHRHTRSLYWEADLLVPMGNHVLFRWFLGWLMPPRVSFLKLTTF
GKMWEYYTSRFVAQDILVPLRKTAECMELMHDEYDIYPLWLCPHRVFKTR
KGTMLDCEEDYDTGELNQGDTEEAQMYTDLGIWYTPGHILRKETFDNAAA
SHKLEQWLIKNHGYQTLYAISELNEEDFWKMFDKTLYQKCREKYKAQDTF
MDVYYKVGRKNTSASALAANK*

mRNA from alignment at tig00000868_pilon:141770..143485+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1077.t1 ID=Ggra1077.t1|Name=Ggra1077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000868_pilon:141770..143485+ (Gracilaria gracilis GNS1m male)
ATGAGTGATACCTCACTTAAAGCTGATGAGAAAGAGCAAACTGGGAACTG
GTGGTGGAACCCTGAGTCTGATCCACGACCAATATGTCATCACCCACGTG
CTCCCTTCCACCTCGTAGACTTCTTAATGCAATTTCGATGGATAGTTATA
ATTCCCATTGTTCTACCATTGTCCTTTATCTGGGCTCGCCTTCATTTGCT
ACGAGCATGGATCAAGTCATTGATTCGCGGCCAGGCAACAATTCGCAAGC
ATCTCGATCGTGTTGAACGCATACGTGAGGCGTTGGCAAAGCACCGCCCT
GGTGATCATGGGTTGGTATGTACCGCTCGACCGTCGTTTTGGAGCGTTAC
AAATCGCGACTCGGCGTACAAACGTGGTTCTCGCTATGAAGTGGACCTTT
CGGATTTAGCAGATGTTGTCCACGTAGACATGGATCGCATGATTGTGAAG
ATGGAACCATACGTGACGATGGGGTATATTACGGCCACTCTGTTGAAGAT
GGGCGTCTGCATCCCAATTGTCCCAGAATACGATGACCTCACTGTTGGTG
GGTTAGTATGTGGATACGGCATCGAAGGCTCTAGTCATAAGTATGGTCTC
TTCTATGACGAAGTTGTTTCAATGGAAATCGTCCTAGCTGGAGGACGTAC
GGTAACCGCCACCCGCGATAACGAGTACAGTGACTTATTCCACGCTATCC
CTTGGTCCTACGGTGCGATAGGTATGTTGGTAGGCATTGAAATGCGTATC
ATAAGAGTGAAACCGTACATGAAAGTAACATATTATCCCGTGGCGGGAAC
TATCGAGGAAATGTGTAAGGCGTGGAATCATTTTCTTGTTCCCACCGACA
AGCCTTGGGCAGAATACGTGGAAGGATTGATGTATAGCTCCAACCGCGGG
GTGATAATGACTGCTGATTACGTTGAAGAAGAAGAAGCCAAGCACGGAAA
GATAAACCGTATGGGCTACTGGTTCAAACCATGGTTTCACAAACATGTCA
AAGAAGCCATTCTAGACAAAACTGTAGATGGTTCGCCTGTTGTTGAATAT
GTGCCCACTAGAGACTACTACCATCGACATACGAGAAGTCTCTACTGGGA
AGCAGATTTGCTTGTTCCAATGGGAAACCATGTCTTGTTCCGATGGTTCC
TGGGATGGCTTATGCCGCCAAGGGTGAGCTTTTTGAAGCTAACAACGTTC
GGGAAAATGTGGGAGTACTACACGTCCCGTTTTGTAGCGCAAGATATCCT
TGTTCCACTGCGAAAGACTGCTGAGTGTATGGAGCTGATGCATGATGAGT
ATGATATTTACCCACTGTGGTTGTGTCCGCATCGTGTTTTCAAGACACGA
AAGGGGACCATGTTGGACTGTGAGGAAGATTACGATACAGGTGAATTGAA
CCAAGGAGACACAGAAGAAGCACAAATGTATACGGATCTGGGTATTTGGT
ACACACCAGGTCATATCCTTCGAAAAGAAACGTTCGACAATGCGGCCGCG
AGTCACAAGCTGGAACAATGGCTCATTAAGAACCATGGTTATCAAACTCT
GTATGCTATTTCCGAACTGAACGAAGAAGACTTCTGGAAAATGTTCGACA
AAACTCTGTATCAGAAGTGTAGGGAGAAGTACAAAGCCCAGGACACTTTT
ATGGACGTATACTATAAAGTAGGTAGAAAGAACACCAGCGCTTCAGCACT
CGCAGCGAACAAATGA

Coding sequence (CDS) from alignment at tig00000868_pilon:141770..143485+

>Ggra1077.t1 ID=Ggra1077.t1|Name=Ggra1077.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1716bp|location=Sequence derived from alignment at tig00000868_pilon:141770..143485+ (Gracilaria gracilis GNS1m male)
ATGAGTGATACCTCACTTAAAGCTGATGAGAAAGAGCAAACTGGGAACTG
GTGGTGGAACCCTGAGTCTGATCCACGACCAATATGTCATCACCCACGTG
CTCCCTTCCACCTCGTAGACTTCTTAATGCAATTTCGATGGATAGTTATA
ATTCCCATTGTTCTACCATTGTCCTTTATCTGGGCTCGCCTTCATTTGCT
ACGAGCATGGATCAAGTCATTGATTCGCGGCCAGGCAACAATTCGCAAGC
ATCTCGATCGTGTTGAACGCATACGTGAGGCGTTGGCAAAGCACCGCCCT
GGTGATCATGGGTTGGTATGTACCGCTCGACCGTCGTTTTGGAGCGTTAC
AAATCGCGACTCGGCGTACAAACGTGGTTCTCGCTATGAAGTGGACCTTT
CGGATTTAGCAGATGTTGTCCACGTAGACATGGATCGCATGATTGTGAAG
ATGGAACCATACGTGACGATGGGGTATATTACGGCCACTCTGTTGAAGAT
GGGCGTCTGCATCCCAATTGTCCCAGAATACGATGACCTCACTGTTGGTG
GGTTAGTATGTGGATACGGCATCGAAGGCTCTAGTCATAAGTATGGTCTC
TTCTATGACGAAGTTGTTTCAATGGAAATCGTCCTAGCTGGAGGACGTAC
GGTAACCGCCACCCGCGATAACGAGTACAGTGACTTATTCCACGCTATCC
CTTGGTCCTACGGTGCGATAGGTATGTTGGTAGGCATTGAAATGCGTATC
ATAAGAGTGAAACCGTACATGAAAGTAACATATTATCCCGTGGCGGGAAC
TATCGAGGAAATGTGTAAGGCGTGGAATCATTTTCTTGTTCCCACCGACA
AGCCTTGGGCAGAATACGTGGAAGGATTGATGTATAGCTCCAACCGCGGG
GTGATAATGACTGCTGATTACGTTGAAGAAGAAGAAGCCAAGCACGGAAA
GATAAACCGTATGGGCTACTGGTTCAAACCATGGTTTCACAAACATGTCA
AAGAAGCCATTCTAGACAAAACTGTAGATGGTTCGCCTGTTGTTGAATAT
GTGCCCACTAGAGACTACTACCATCGACATACGAGAAGTCTCTACTGGGA
AGCAGATTTGCTTGTTCCAATGGGAAACCATGTCTTGTTCCGATGGTTCC
TGGGATGGCTTATGCCGCCAAGGGTGAGCTTTTTGAAGCTAACAACGTTC
GGGAAAATGTGGGAGTACTACACGTCCCGTTTTGTAGCGCAAGATATCCT
TGTTCCACTGCGAAAGACTGCTGAGTGTATGGAGCTGATGCATGATGAGT
ATGATATTTACCCACTGTGGTTGTGTCCGCATCGTGTTTTCAAGACACGA
AAGGGGACCATGTTGGACTGTGAGGAAGATTACGATACAGGTGAATTGAA
CCAAGGAGACACAGAAGAAGCACAAATGTATACGGATCTGGGTATTTGGT
ACACACCAGGTCATATCCTTCGAAAAGAAACGTTCGACAATGCGGCCGCG
AGTCACAAGCTGGAACAATGGCTCATTAAGAACCATGGTTATCAAACTCT
GTATGCTATTTCCGAACTGAACGAAGAAGACTTCTGGAAAATGTTCGACA
AAACTCTGTATCAGAAGTGTAGGGAGAAGTACAAAGCCCAGGACACTTTT
ATGGACGTATACTATAAAGTAGGTAGAAAGAACACCAGCGCTTCAGCACT
CGCAGCGAACAAATGA