Ggra1056.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1056.t1
Unique NameGgra1056.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:68067..69827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102125.Xen7305DRAFT_00035040
PFAMsAmino_oxidase,NAD_binding_8
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01960
KEGG koko:K09835
KEGG ReactionR07512
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Evalue9.13e-133
EggNOG OGsCOG1233@1|root,COG1233@2|Bacteria,1G0AY@1117|Cyanobacteria,3VHQG@52604|Pleurocapsales
EC5.2.1.13
DescriptionFAD dependent oxidoreductase
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1056Ggra1056Gracilaria gracilis GNS1m malegenetig00000868_pilon 68067..69827 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1056.t1.stop1Ggra1056.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 68067..68069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1056.t1.CDS1Ggra1056.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 68067..69827 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1056.t1.exon1Ggra1056.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 68067..69827 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1056.t1.start1Ggra1056.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 69825..69827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1056.t1Ggra1056.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 68067..69827 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MVTAAFSSFCGVSVLDNRYPVCQSQGLAHQRPVTHSYNGRVSIRSSMSEE
SYDIITIGSGLGGLCASALLSTYGLRTLTLESHSEPGGAAHCFSRRTPHG
TVTFESGPHLFSGLQYPSENPMYHVLRAVDAKLDVTRYDTWGVFLPNTYV
RTTLRAREPLFEQLLKVAGGPTAHTDMNNLTNVLRPLGEAATLLPPAALR
AADILGSLRVAARYILSPSSLSHIPRISQLSSPFSTILDRFVSDEFSRNF
LNLLCFLLAGTTAERVPVAEVAFMFREWLGDDAVIGSPVLQRPVGGASAV
AKALIEAIERRHGVVQTGSHVSSVIIDGGRATGVQLKSGRTIRANKAVIS
NVSAMDVNRLLPGWKTNVDNLGMDKSAGDMCPSFMHLHVAIELTEEIRSR
LPHGTLEPNYVCIENWALGLEHPDNVVLISVPSVLDEDLCPAGHAVLHAY
TPATEPFENWRNLEPGTPEYEEFKGKRSQILWKAVNRVFGTDIRSKAYVK
LVGTPRTHARFLRRHDGSYGPKVDARQGGLGIPFPGTGGYPKGFYCVGDG
VFPGVGVPAVAGSAWIVANGLVSVKEQVELLRKIGL*
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spliced messenger RNA

>Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000868_pilon:68067..69827- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACTGCCGCCTTTAGCTCGTTCTGTGGAGTTTCGGTTCTTGACAA
CCGATATCCAGTCTGCCAGTCGCAAGGACTTGCACACCAAAGACCAGTCA
CTCACAGCTATAATGGTAGAGTTTCCATTCGGAGTTCCATGTCGGAGGAA
AGTTACGATATTATCACAATAGGGTCAGGGTTGGGAGGTCTCTGCGCATC
AGCATTGCTATCTACATATGGCCTACGCACACTCACGCTCGAATCTCATT
CGGAGCCTGGTGGAGCAGCTCATTGCTTTTCAAGAAGAACTCCTCACGGG
ACCGTAACTTTTGAGTCAGGGCCGCATTTATTCTCAGGTCTTCAGTATCC
ATCCGAGAACCCTATGTACCATGTCTTGCGTGCCGTTGATGCAAAACTTG
ATGTCACACGCTATGATACATGGGGGGTATTCTTACCGAATACATATGTG
CGAACAACTCTTCGAGCTCGAGAGCCCCTTTTTGAACAACTTCTCAAAGT
AGCCGGAGGTCCAACAGCCCATACCGATATGAACAATCTTACAAATGTTT
TGCGCCCCCTAGGGGAAGCCGCAACTTTATTACCACCCGCAGCACTCCGT
GCCGCTGATATTCTTGGTTCTCTTCGAGTTGCTGCTCGGTACATATTATC
CCCGAGCTCCCTGTCGCATATCCCACGTATATCGCAACTGTCGAGCCCCT
TTTCCACCATCCTAGATCGTTTCGTATCCGACGAGTTCTCCCGCAACTTT
CTAAATCTTTTGTGCTTCTTACTTGCCGGAACAACGGCAGAACGAGTCCC
CGTCGCTGAAGTAGCTTTTATGTTTCGTGAGTGGCTCGGGGATGACGCTG
TTATAGGTTCGCCCGTACTACAACGGCCAGTAGGAGGGGCTTCTGCTGTA
GCAAAGGCTCTCATCGAAGCCATAGAAAGACGACATGGTGTCGTACAGAC
GGGATCTCACGTGAGTAGCGTTATCATTGACGGTGGTCGTGCAACCGGGG
TACAATTAAAATCTGGTCGTACCATCCGCGCAAACAAAGCCGTCATTTCG
AACGTCTCTGCTATGGATGTTAACCGCTTACTACCAGGGTGGAAAACTAA
TGTCGACAACCTTGGTATGGACAAAAGTGCTGGGGATATGTGTCCGTCCT
TCATGCACCTTCACGTTGCCATAGAATTAACTGAAGAGATTCGATCTCGC
TTACCTCATGGAACTCTGGAACCCAATTATGTTTGCATTGAGAACTGGGC
TCTTGGATTGGAGCATCCGGATAATGTAGTTCTTATCAGTGTGCCGTCCG
TGTTGGATGAAGATCTATGTCCAGCTGGTCACGCAGTGTTGCATGCTTAT
ACACCAGCCACGGAACCGTTCGAAAACTGGAGAAATTTGGAGCCTGGGAC
TCCTGAGTACGAAGAATTCAAAGGGAAACGCTCACAAATCTTATGGAAGG
CTGTTAATCGCGTCTTCGGCACTGATATTCGCTCTAAAGCCTATGTCAAA
CTCGTCGGTACACCGCGGACCCATGCTCGATTTCTTCGCAGACATGATGG
TTCGTATGGTCCGAAGGTTGACGCAAGGCAAGGCGGTTTGGGAATTCCAT
TTCCTGGAACTGGTGGTTATCCCAAAGGGTTTTATTGTGTAGGTGATGGT
GTGTTTCCTGGGGTTGGGGTTCCTGCTGTAGCTGGGAGTGCCTGGATTGT
AGCGAACGGATTAGTGAGTGTTAAAGAACAAGTAGAACTTCTGAGGAAAA
TTGGTTTATGA
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protein sequence of Ggra1056.t1

>Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MVTAAFSSFCGVSVLDNRYPVCQSQGLAHQRPVTHSYNGRVSIRSSMSEE
SYDIITIGSGLGGLCASALLSTYGLRTLTLESHSEPGGAAHCFSRRTPHG
TVTFESGPHLFSGLQYPSENPMYHVLRAVDAKLDVTRYDTWGVFLPNTYV
RTTLRAREPLFEQLLKVAGGPTAHTDMNNLTNVLRPLGEAATLLPPAALR
AADILGSLRVAARYILSPSSLSHIPRISQLSSPFSTILDRFVSDEFSRNF
LNLLCFLLAGTTAERVPVAEVAFMFREWLGDDAVIGSPVLQRPVGGASAV
AKALIEAIERRHGVVQTGSHVSSVIIDGGRATGVQLKSGRTIRANKAVIS
NVSAMDVNRLLPGWKTNVDNLGMDKSAGDMCPSFMHLHVAIELTEEIRSR
LPHGTLEPNYVCIENWALGLEHPDNVVLISVPSVLDEDLCPAGHAVLHAY
TPATEPFENWRNLEPGTPEYEEFKGKRSQILWKAVNRVFGTDIRSKAYVK
LVGTPRTHARFLRRHDGSYGPKVDARQGGLGIPFPGTGGYPKGFYCVGDG
VFPGVGVPAVAGSAWIVANGLVSVKEQVELLRKIGL*
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mRNA from alignment at tig00000868_pilon:68067..69827-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000868_pilon:68067..69827- (Gracilaria gracilis GNS1m male)
ATGGTTACTGCCGCCTTTAGCTCGTTCTGTGGAGTTTCGGTTCTTGACAA
CCGATATCCAGTCTGCCAGTCGCAAGGACTTGCACACCAAAGACCAGTCA
CTCACAGCTATAATGGTAGAGTTTCCATTCGGAGTTCCATGTCGGAGGAA
AGTTACGATATTATCACAATAGGGTCAGGGTTGGGAGGTCTCTGCGCATC
AGCATTGCTATCTACATATGGCCTACGCACACTCACGCTCGAATCTCATT
CGGAGCCTGGTGGAGCAGCTCATTGCTTTTCAAGAAGAACTCCTCACGGG
ACCGTAACTTTTGAGTCAGGGCCGCATTTATTCTCAGGTCTTCAGTATCC
ATCCGAGAACCCTATGTACCATGTCTTGCGTGCCGTTGATGCAAAACTTG
ATGTCACACGCTATGATACATGGGGGGTATTCTTACCGAATACATATGTG
CGAACAACTCTTCGAGCTCGAGAGCCCCTTTTTGAACAACTTCTCAAAGT
AGCCGGAGGTCCAACAGCCCATACCGATATGAACAATCTTACAAATGTTT
TGCGCCCCCTAGGGGAAGCCGCAACTTTATTACCACCCGCAGCACTCCGT
GCCGCTGATATTCTTGGTTCTCTTCGAGTTGCTGCTCGGTACATATTATC
CCCGAGCTCCCTGTCGCATATCCCACGTATATCGCAACTGTCGAGCCCCT
TTTCCACCATCCTAGATCGTTTCGTATCCGACGAGTTCTCCCGCAACTTT
CTAAATCTTTTGTGCTTCTTACTTGCCGGAACAACGGCAGAACGAGTCCC
CGTCGCTGAAGTAGCTTTTATGTTTCGTGAGTGGCTCGGGGATGACGCTG
TTATAGGTTCGCCCGTACTACAACGGCCAGTAGGAGGGGCTTCTGCTGTA
GCAAAGGCTCTCATCGAAGCCATAGAAAGACGACATGGTGTCGTACAGAC
GGGATCTCACGTGAGTAGCGTTATCATTGACGGTGGTCGTGCAACCGGGG
TACAATTAAAATCTGGTCGTACCATCCGCGCAAACAAAGCCGTCATTTCG
AACGTCTCTGCTATGGATGTTAACCGCTTACTACCAGGGTGGAAAACTAA
TGTCGACAACCTTGGTATGGACAAAAGTGCTGGGGATATGTGTCCGTCCT
TCATGCACCTTCACGTTGCCATAGAATTAACTGAAGAGATTCGATCTCGC
TTACCTCATGGAACTCTGGAACCCAATTATGTTTGCATTGAGAACTGGGC
TCTTGGATTGGAGCATCCGGATAATGTAGTTCTTATCAGTGTGCCGTCCG
TGTTGGATGAAGATCTATGTCCAGCTGGTCACGCAGTGTTGCATGCTTAT
ACACCAGCCACGGAACCGTTCGAAAACTGGAGAAATTTGGAGCCTGGGAC
TCCTGAGTACGAAGAATTCAAAGGGAAACGCTCACAAATCTTATGGAAGG
CTGTTAATCGCGTCTTCGGCACTGATATTCGCTCTAAAGCCTATGTCAAA
CTCGTCGGTACACCGCGGACCCATGCTCGATTTCTTCGCAGACATGATGG
TTCGTATGGTCCGAAGGTTGACGCAAGGCAAGGCGGTTTGGGAATTCCAT
TTCCTGGAACTGGTGGTTATCCCAAAGGGTTTTATTGTGTAGGTGATGGT
GTGTTTCCTGGGGTTGGGGTTCCTGCTGTAGCTGGGAGTGCCTGGATTGT
AGCGAACGGATTAGTGAGTGTTAAAGAACAAGTAGAACTTCTGAGGAAAA
TTGGTTTATGA
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Coding sequence (CDS) from alignment at tig00000868_pilon:68067..69827-

>Ggra1056.t1 ID=Ggra1056.t1|Name=Ggra1056.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000868_pilon:68067..69827- (Gracilaria gracilis GNS1m male)
ATGGTTACTGCCGCCTTTAGCTCGTTCTGTGGAGTTTCGGTTCTTGACAA
CCGATATCCAGTCTGCCAGTCGCAAGGACTTGCACACCAAAGACCAGTCA
CTCACAGCTATAATGGTAGAGTTTCCATTCGGAGTTCCATGTCGGAGGAA
AGTTACGATATTATCACAATAGGGTCAGGGTTGGGAGGTCTCTGCGCATC
AGCATTGCTATCTACATATGGCCTACGCACACTCACGCTCGAATCTCATT
CGGAGCCTGGTGGAGCAGCTCATTGCTTTTCAAGAAGAACTCCTCACGGG
ACCGTAACTTTTGAGTCAGGGCCGCATTTATTCTCAGGTCTTCAGTATCC
ATCCGAGAACCCTATGTACCATGTCTTGCGTGCCGTTGATGCAAAACTTG
ATGTCACACGCTATGATACATGGGGGGTATTCTTACCGAATACATATGTG
CGAACAACTCTTCGAGCTCGAGAGCCCCTTTTTGAACAACTTCTCAAAGT
AGCCGGAGGTCCAACAGCCCATACCGATATGAACAATCTTACAAATGTTT
TGCGCCCCCTAGGGGAAGCCGCAACTTTATTACCACCCGCAGCACTCCGT
GCCGCTGATATTCTTGGTTCTCTTCGAGTTGCTGCTCGGTACATATTATC
CCCGAGCTCCCTGTCGCATATCCCACGTATATCGCAACTGTCGAGCCCCT
TTTCCACCATCCTAGATCGTTTCGTATCCGACGAGTTCTCCCGCAACTTT
CTAAATCTTTTGTGCTTCTTACTTGCCGGAACAACGGCAGAACGAGTCCC
CGTCGCTGAAGTAGCTTTTATGTTTCGTGAGTGGCTCGGGGATGACGCTG
TTATAGGTTCGCCCGTACTACAACGGCCAGTAGGAGGGGCTTCTGCTGTA
GCAAAGGCTCTCATCGAAGCCATAGAAAGACGACATGGTGTCGTACAGAC
GGGATCTCACGTGAGTAGCGTTATCATTGACGGTGGTCGTGCAACCGGGG
TACAATTAAAATCTGGTCGTACCATCCGCGCAAACAAAGCCGTCATTTCG
AACGTCTCTGCTATGGATGTTAACCGCTTACTACCAGGGTGGAAAACTAA
TGTCGACAACCTTGGTATGGACAAAAGTGCTGGGGATATGTGTCCGTCCT
TCATGCACCTTCACGTTGCCATAGAATTAACTGAAGAGATTCGATCTCGC
TTACCTCATGGAACTCTGGAACCCAATTATGTTTGCATTGAGAACTGGGC
TCTTGGATTGGAGCATCCGGATAATGTAGTTCTTATCAGTGTGCCGTCCG
TGTTGGATGAAGATCTATGTCCAGCTGGTCACGCAGTGTTGCATGCTTAT
ACACCAGCCACGGAACCGTTCGAAAACTGGAGAAATTTGGAGCCTGGGAC
TCCTGAGTACGAAGAATTCAAAGGGAAACGCTCACAAATCTTATGGAAGG
CTGTTAATCGCGTCTTCGGCACTGATATTCGCTCTAAAGCCTATGTCAAA
CTCGTCGGTACACCGCGGACCCATGCTCGATTTCTTCGCAGACATGATGG
TTCGTATGGTCCGAAGGTTGACGCAAGGCAAGGCGGTTTGGGAATTCCAT
TTCCTGGAACTGGTGGTTATCCCAAAGGGTTTTATTGTGTAGGTGATGGT
GTGTTTCCTGGGGTTGGGGTTCCTGCTGTAGCTGGGAGTGCCTGGATTGT
AGCGAACGGATTAGTGAGTGTTAAAGAACAAGTAGAACTTCTGAGGAAAA
TTGGTTTATGA
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