Ggra1071.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1071.t1
Unique Name	Ggra1071.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	498

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000868_pilon	contig	tig00000868_pilon:102522..104015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1071	Ggra1071	Gracilaria gracilis GNS1m male	gene	tig00000868_pilon 102522..104015 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1071.t1.start1	Ggra1071.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000868_pilon 102522..102524 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1071.t1.CDS1	Ggra1071.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000868_pilon 102522..104015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1071.t1.exon1	Ggra1071.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000868_pilon 102522..104015 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1071.t1.stop1	Ggra1071.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000868_pilon 104013..104015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1071.t1	Ggra1071.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000868_pilon 102522..104015 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000868_pilon:102522..104015+
coding sequence from alignment at tig00000868_pilon:102522..104015+

mRNA sequence

>Ggra1071.t1 ID=Ggra1071.t1|Name=Ggra1071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp
MLEMPRRSARLQQAECNALPERATKRQRHEKPATGVSASRTPLADLSNSN
TDETRAKSRHQIPTKQTQKAYKRTRSSSTAEAKQEAEYRLGSKPILQAET
VPVTNQMKPEASRTRSQTRKVQERGVKQIGSRANSEKLLSLAAEQRKRAR
KPNSMQMTSSSSPKQSKVDSTAPSPAQKKSGDPSPPSPTHERKDASSDIP
LPQAKDGNLPKPYRQNSPSPPLYPEDEIRPVPSQPKALRHERRPKRNLRP
PSPPPLYPEDEIQPLPTKLKKTPSYGTRTKLKEVTNLKYPVPKPQPPRLT
SQIQSAPSHQSPSLPISSSLLEHEDEVAKPSLLDEPSNAERDTQSTPRSR
IVRQSSGTPSSEQLLQKDPSADLAPRTQTPGFRSELETRSIYKSQIGSKA
AAPIHTYSKRRQNNQNLALPSRKSLGVRSRTSSGESPDSKDSIAYDSQSD
QSDNDDESEDSEPEKSDREDPALVSFIGQQRKLWDEIDGIDLEEDLF*

spliced messenger RNA

>Ggra1071.t1 ID=Ggra1071.t1|Name=Ggra1071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000868_pilon:102522..104015+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGAGATGCCTCGGCGAAGTGCTCGACTTCAACAAGCAGAATGTAA
CGCACTACCAGAGCGTGCGACGAAGCGACAACGCCATGAGAAACCCGCTA
CAGGAGTAAGCGCTTCGCGGACACCCCTAGCAGACTTGTCCAACTCTAAT
ACCGATGAAACGCGCGCGAAGAGCCGGCATCAAATACCAACCAAACAAAC
TCAGAAAGCTTACAAGAGAACGCGGAGCTCAAGCACAGCTGAAGCCAAAC
AAGAAGCAGAGTATCGCTTGGGCAGTAAGCCCATTTTGCAGGCCGAGACA
GTACCCGTTACGAATCAAATGAAGCCCGAAGCTTCACGAACGAGGTCGCA
AACGCGCAAAGTTCAAGAGCGTGGCGTAAAGCAAATTGGATCCCGAGCGA
ATTCAGAGAAGCTCTTATCACTTGCTGCCGAACAACGAAAACGAGCGCGT
AAGCCGAATTCCATGCAAATGACGTCGTCGTCAAGTCCAAAACAATCAAA
AGTCGATTCAACAGCACCGTCGCCTGCGCAGAAGAAATCCGGCGATCCTT
CGCCGCCATCCCCAACGCATGAAAGAAAAGATGCGTCATCTGATATCCCT
CTACCGCAAGCGAAAGATGGAAATCTACCGAAACCTTATCGTCAGAATTC
GCCTTCACCTCCACTCTACCCTGAAGATGAAATTCGACCTGTGCCATCCC
AACCGAAAGCTCTTCGACATGAAAGACGGCCAAAGCGTAATCTTCGCCCG
CCCTCGCCGCCACCTTTATACCCTGAAGATGAAATCCAGCCTTTGCCCAC
GAAATTGAAGAAGACCCCTTCTTATGGTACGAGAACTAAGCTTAAAGAGG
TTACCAACCTAAAATACCCCGTGCCAAAGCCCCAACCCCCAAGATTAACA
TCTCAAATTCAGTCGGCACCGTCACACCAATCCCCCAGCTTGCCAATATC
TTCAAGTCTGCTAGAACACGAAGACGAAGTTGCTAAACCTTCTTTGTTAG
ATGAGCCTTCAAATGCAGAGCGTGACACACAGTCAACACCAAGAAGCCGC
ATTGTGAGGCAGTCTTCTGGCACTCCCAGTAGTGAACAGCTGCTTCAGAA
AGACCCAAGCGCGGACTTAGCACCCCGGACGCAGACGCCTGGGTTCCGTT
CCGAGTTAGAGACGCGATCAATCTACAAGTCTCAAATTGGCTCCAAAGCT
GCAGCCCCGATACATACGTATAGCAAACGGCGGCAGAATAACCAGAATTT
GGCTCTTCCATCGAGAAAATCGCTCGGGGTGCGTTCAAGGACTTCCAGTG
GGGAAAGCCCGGATTCGAAAGACAGCATAGCATACGATTCACAGAGTGAT
CAATCGGACAATGATGATGAATCAGAAGATTCAGAACCTGAAAAATCCGA
CCGTGAGGATCCCGCACTCGTTTCTTTCATCGGGCAGCAACGGAAGCTTT
GGGATGAGATTGATGGTATTGACCTGGAGGAAGACCTATTCTAG

protein sequence of Ggra1071.t1

>Ggra1071.t1 ID=Ggra1071.t1|Name=Ggra1071.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=498bp
MLEMPRRSARLQQAECNALPERATKRQRHEKPATGVSASRTPLADLSNSN
TDETRAKSRHQIPTKQTQKAYKRTRSSSTAEAKQEAEYRLGSKPILQAET
VPVTNQMKPEASRTRSQTRKVQERGVKQIGSRANSEKLLSLAAEQRKRAR
KPNSMQMTSSSSPKQSKVDSTAPSPAQKKSGDPSPPSPTHERKDASSDIP
LPQAKDGNLPKPYRQNSPSPPLYPEDEIRPVPSQPKALRHERRPKRNLRP
PSPPPLYPEDEIQPLPTKLKKTPSYGTRTKLKEVTNLKYPVPKPQPPRLT
SQIQSAPSHQSPSLPISSSLLEHEDEVAKPSLLDEPSNAERDTQSTPRSR
IVRQSSGTPSSEQLLQKDPSADLAPRTQTPGFRSELETRSIYKSQIGSKA
AAPIHTYSKRRQNNQNLALPSRKSLGVRSRTSSGESPDSKDSIAYDSQSD
QSDNDDESEDSEPEKSDREDPALVSFIGQQRKLWDEIDGIDLEEDLF*

mRNA from alignment at tig00000868_pilon:102522..104015+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1071.t1 ID=Ggra1071.t1|Name=Ggra1071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000868_pilon:102522..104015+ (Gracilaria gracilis GNS1m male)
ATGTTGGAGATGCCTCGGCGAAGTGCTCGACTTCAACAAGCAGAATGTAA
CGCACTACCAGAGCGTGCGACGAAGCGACAACGCCATGAGAAACCCGCTA
CAGGAGTAAGCGCTTCGCGGACACCCCTAGCAGACTTGTCCAACTCTAAT
ACCGATGAAACGCGCGCGAAGAGCCGGCATCAAATACCAACCAAACAAAC
TCAGAAAGCTTACAAGAGAACGCGGAGCTCAAGCACAGCTGAAGCCAAAC
AAGAAGCAGAGTATCGCTTGGGCAGTAAGCCCATTTTGCAGGCCGAGACA
GTACCCGTTACGAATCAAATGAAGCCCGAAGCTTCACGAACGAGGTCGCA
AACGCGCAAAGTTCAAGAGCGTGGCGTAAAGCAAATTGGATCCCGAGCGA
ATTCAGAGAAGCTCTTATCACTTGCTGCCGAACAACGAAAACGAGCGCGT
AAGCCGAATTCCATGCAAATGACGTCGTCGTCAAGTCCAAAACAATCAAA
AGTCGATTCAACAGCACCGTCGCCTGCGCAGAAGAAATCCGGCGATCCTT
CGCCGCCATCCCCAACGCATGAAAGAAAAGATGCGTCATCTGATATCCCT
CTACCGCAAGCGAAAGATGGAAATCTACCGAAACCTTATCGTCAGAATTC
GCCTTCACCTCCACTCTACCCTGAAGATGAAATTCGACCTGTGCCATCCC
AACCGAAAGCTCTTCGACATGAAAGACGGCCAAAGCGTAATCTTCGCCCG
CCCTCGCCGCCACCTTTATACCCTGAAGATGAAATCCAGCCTTTGCCCAC
GAAATTGAAGAAGACCCCTTCTTATGGTACGAGAACTAAGCTTAAAGAGG
TTACCAACCTAAAATACCCCGTGCCAAAGCCCCAACCCCCAAGATTAACA
TCTCAAATTCAGTCGGCACCGTCACACCAATCCCCCAGCTTGCCAATATC
TTCAAGTCTGCTAGAACACGAAGACGAAGTTGCTAAACCTTCTTTGTTAG
ATGAGCCTTCAAATGCAGAGCGTGACACACAGTCAACACCAAGAAGCCGC
ATTGTGAGGCAGTCTTCTGGCACTCCCAGTAGTGAACAGCTGCTTCAGAA
AGACCCAAGCGCGGACTTAGCACCCCGGACGCAGACGCCTGGGTTCCGTT
CCGAGTTAGAGACGCGATCAATCTACAAGTCTCAAATTGGCTCCAAAGCT
GCAGCCCCGATACATACGTATAGCAAACGGCGGCAGAATAACCAGAATTT
GGCTCTTCCATCGAGAAAATCGCTCGGGGTGCGTTCAAGGACTTCCAGTG
GGGAAAGCCCGGATTCGAAAGACAGCATAGCATACGATTCACAGAGTGAT
CAATCGGACAATGATGATGAATCAGAAGATTCAGAACCTGAAAAATCCGA
CCGTGAGGATCCCGCACTCGTTTCTTTCATCGGGCAGCAACGGAAGCTTT
GGGATGAGATTGATGGTATTGACCTGGAGGAAGACCTATTCTAG

Coding sequence (CDS) from alignment at tig00000868_pilon:102522..104015+

>Ggra1071.t1 ID=Ggra1071.t1|Name=Ggra1071.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000868_pilon:102522..104015+ (Gracilaria gracilis GNS1m male)
ATGTTGGAGATGCCTCGGCGAAGTGCTCGACTTCAACAAGCAGAATGTAA
CGCACTACCAGAGCGTGCGACGAAGCGACAACGCCATGAGAAACCCGCTA
CAGGAGTAAGCGCTTCGCGGACACCCCTAGCAGACTTGTCCAACTCTAAT
ACCGATGAAACGCGCGCGAAGAGCCGGCATCAAATACCAACCAAACAAAC
TCAGAAAGCTTACAAGAGAACGCGGAGCTCAAGCACAGCTGAAGCCAAAC
AAGAAGCAGAGTATCGCTTGGGCAGTAAGCCCATTTTGCAGGCCGAGACA
GTACCCGTTACGAATCAAATGAAGCCCGAAGCTTCACGAACGAGGTCGCA
AACGCGCAAAGTTCAAGAGCGTGGCGTAAAGCAAATTGGATCCCGAGCGA
ATTCAGAGAAGCTCTTATCACTTGCTGCCGAACAACGAAAACGAGCGCGT
AAGCCGAATTCCATGCAAATGACGTCGTCGTCAAGTCCAAAACAATCAAA
AGTCGATTCAACAGCACCGTCGCCTGCGCAGAAGAAATCCGGCGATCCTT
CGCCGCCATCCCCAACGCATGAAAGAAAAGATGCGTCATCTGATATCCCT
CTACCGCAAGCGAAAGATGGAAATCTACCGAAACCTTATCGTCAGAATTC
GCCTTCACCTCCACTCTACCCTGAAGATGAAATTCGACCTGTGCCATCCC
AACCGAAAGCTCTTCGACATGAAAGACGGCCAAAGCGTAATCTTCGCCCG
CCCTCGCCGCCACCTTTATACCCTGAAGATGAAATCCAGCCTTTGCCCAC
GAAATTGAAGAAGACCCCTTCTTATGGTACGAGAACTAAGCTTAAAGAGG
TTACCAACCTAAAATACCCCGTGCCAAAGCCCCAACCCCCAAGATTAACA
TCTCAAATTCAGTCGGCACCGTCACACCAATCCCCCAGCTTGCCAATATC
TTCAAGTCTGCTAGAACACGAAGACGAAGTTGCTAAACCTTCTTTGTTAG
ATGAGCCTTCAAATGCAGAGCGTGACACACAGTCAACACCAAGAAGCCGC
ATTGTGAGGCAGTCTTCTGGCACTCCCAGTAGTGAACAGCTGCTTCAGAA
AGACCCAAGCGCGGACTTAGCACCCCGGACGCAGACGCCTGGGTTCCGTT
CCGAGTTAGAGACGCGATCAATCTACAAGTCTCAAATTGGCTCCAAAGCT
GCAGCCCCGATACATACGTATAGCAAACGGCGGCAGAATAACCAGAATTT
GGCTCTTCCATCGAGAAAATCGCTCGGGGTGCGTTCAAGGACTTCCAGTG
GGGAAAGCCCGGATTCGAAAGACAGCATAGCATACGATTCACAGAGTGAT
CAATCGGACAATGATGATGAATCAGAAGATTCAGAACCTGAAAAATCCGA
CCGTGAGGATCCCGCACTCGTTTCTTTCATCGGGCAGCAACGGAAGCTTT
GGGATGAGATTGATGGTATTGACCTGGAGGAAGACCTATTCTAG