Ggra1013.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1013.t1
Unique Name	Ggra1013.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	599

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:463444..465240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1013	Ggra1013	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 463444..465240 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1013.t1.start1	Ggra1013.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 463444..463446 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1013.t1.CDS1	Ggra1013.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 463444..465240 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1013.t1.exon1	Ggra1013.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 463444..465240 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1013.t1.stop1	Ggra1013.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 465238..465240 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1013.t1	Ggra1013.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 463444..465240 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:463444..465240+
coding sequence from alignment at tig00000027_pilon:463444..465240+

mRNA sequence

>Ggra1013.t1 ID=Ggra1013.t1|Name=Ggra1013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=599bp
MDPSRQKSLEKARALEEKVLLNNDVDAMIELARMLLEDDVSHHARARQML
ERAVKQAQNPEAMYVLAVSLMEEEDESQQRRAFSLLERSLRIQEHSAVLL
CMARCYSQGLGVKRDCKLMRQLCERSLRLKQDPYAMAFLASNLLLYPEMC
SQTKRALQLFREAIRLSSDHELMNNLAVLYHEGRGNLRPCPKRASKWYLR
AIRASKQPLTMNNLACLLLENDPSDKNVIQAIGMLEDALQCDHGKSEYIF
ISLADAYLEHGNNAQRAFQLYEVAAIRFNSSEAQSRIINSLLDGTDAVFD
DYARILQLFWQVYKTHDSFNALMTFAEMLWTGAKRVPMNRKKAIEVLHSL
QWNCHYCFSLMLRHDLSNYPRGKKRARTLLQQLDEKIDRCDFGGSECIVL
SESKCDSDKLLALQKLRAQTEKKRSTIAWLVPHLRVGRHILPFDGHPDWV
TDVMRRFTLFKSIDSLNLASLVLEIEGEQQEAVTVLEGLMSSDLRLIAML
NLSYILMNDVQGVTKEVTRGMKLLEDAVKETNEVSARAMLANALSRGPDS
DAGDVERGWKLWQSVEEDVNDDEELRKVRRLISAGCEENWAARGFGKG*

spliced messenger RNA

>Ggra1013.t1 ID=Ggra1013.t1|Name=Ggra1013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000027_pilon:463444..465240+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCTCACGCCAAAAATCACTCGAGAAGGCTCGCGCCTTGGAGGA
AAAGGTGCTGCTGAACAATGACGTCGACGCCATGATCGAACTGGCTCGCA
TGCTACTCGAGGATGACGTCTCGCACCATGCCAGAGCCCGTCAAATGTTG
GAAAGAGCCGTGAAACAAGCACAAAATCCCGAGGCTATGTATGTTCTGGC
TGTTTCTCTCATGGAAGAAGAAGATGAGTCACAACAACGGCGCGCTTTTT
CGCTCCTCGAACGCTCCTTGAGAATACAAGAGCATTCTGCCGTACTTCTT
TGCATGGCTCGTTGCTATTCTCAGGGTTTGGGTGTGAAAAGGGATTGCAA
ACTAATGAGGCAGCTGTGCGAACGGTCTTTGCGATTGAAACAAGATCCTT
ATGCAATGGCCTTCTTGGCATCCAACTTGTTGCTATATCCAGAGATGTGC
TCACAAACGAAGCGCGCACTCCAGCTGTTTAGGGAGGCGATTCGTCTTAG
CTCGGACCATGAACTGATGAACAACTTGGCAGTTCTCTATCATGAAGGAC
GCGGTAACTTGAGACCGTGTCCAAAAAGGGCCTCCAAGTGGTATCTTCGC
GCCATTCGCGCATCCAAACAACCATTGACGATGAATAACCTGGCCTGTCT
TCTGCTAGAAAATGACCCCAGTGACAAGAATGTCATCCAAGCCATTGGTA
TGCTTGAAGATGCGCTGCAATGTGATCACGGAAAGAGTGAGTATATATTT
ATATCGCTTGCCGATGCGTATTTGGAACATGGAAATAATGCCCAGCGTGC
GTTTCAGCTGTATGAAGTCGCAGCCATTCGATTCAATTCTAGTGAAGCTC
AATCCCGAATTATCAATTCATTATTAGATGGTACTGATGCTGTTTTCGAC
GACTATGCTCGCATACTGCAGCTCTTCTGGCAAGTCTACAAGACCCATGA
CAGTTTTAATGCACTTATGACCTTTGCAGAAATGTTATGGACGGGTGCAA
AACGTGTTCCAATGAATCGGAAGAAAGCTATCGAGGTCTTGCACTCGTTA
CAATGGAATTGTCATTACTGTTTTTCGTTGATGTTAAGACATGATTTGAG
CAATTACCCCCGGGGAAAGAAGAGGGCCCGAACGCTTCTCCAGCAACTTG
ATGAAAAGATCGACAGATGCGATTTTGGAGGCTCGGAATGCATAGTTCTC
AGCGAAAGCAAGTGTGATAGTGACAAATTGTTGGCGCTGCAAAAGCTTCG
AGCCCAAACGGAAAAGAAACGATCTACTATTGCTTGGTTGGTTCCTCACT
TGCGGGTTGGTCGACACATCTTGCCATTCGATGGCCATCCAGATTGGGTA
ACGGATGTGATGAGGCGGTTCACGCTCTTCAAGAGCATTGATTCGCTAAA
TCTGGCTAGCCTCGTACTTGAAATTGAAGGTGAACAGCAGGAAGCTGTTA
CAGTTCTGGAAGGTCTGATGAGCAGTGATTTGAGGTTGATCGCTATGCTG
AACCTATCGTATATCCTAATGAACGATGTCCAGGGCGTGACAAAGGAGGT
GACAAGAGGAATGAAGCTTTTGGAAGACGCGGTGAAAGAGACAAACGAGG
TTTCCGCTAGAGCGATGCTAGCCAACGCATTGTCAAGAGGACCAGACTCT
GATGCCGGCGATGTGGAAAGAGGATGGAAACTGTGGCAAAGCGTGGAAGA
AGACGTGAATGACGACGAGGAGCTACGAAAAGTTCGACGGCTTATTTCAG
CCGGATGCGAAGAAAATTGGGCTGCACGCGGTTTTGGAAAAGGGTAG

protein sequence of Ggra1013.t1

>Ggra1013.t1 ID=Ggra1013.t1|Name=Ggra1013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=599bp
MDPSRQKSLEKARALEEKVLLNNDVDAMIELARMLLEDDVSHHARARQML
ERAVKQAQNPEAMYVLAVSLMEEEDESQQRRAFSLLERSLRIQEHSAVLL
CMARCYSQGLGVKRDCKLMRQLCERSLRLKQDPYAMAFLASNLLLYPEMC
SQTKRALQLFREAIRLSSDHELMNNLAVLYHEGRGNLRPCPKRASKWYLR
AIRASKQPLTMNNLACLLLENDPSDKNVIQAIGMLEDALQCDHGKSEYIF
ISLADAYLEHGNNAQRAFQLYEVAAIRFNSSEAQSRIINSLLDGTDAVFD
DYARILQLFWQVYKTHDSFNALMTFAEMLWTGAKRVPMNRKKAIEVLHSL
QWNCHYCFSLMLRHDLSNYPRGKKRARTLLQQLDEKIDRCDFGGSECIVL
SESKCDSDKLLALQKLRAQTEKKRSTIAWLVPHLRVGRHILPFDGHPDWV
TDVMRRFTLFKSIDSLNLASLVLEIEGEQQEAVTVLEGLMSSDLRLIAML
NLSYILMNDVQGVTKEVTRGMKLLEDAVKETNEVSARAMLANALSRGPDS
DAGDVERGWKLWQSVEEDVNDDEELRKVRRLISAGCEENWAARGFGKG*

mRNA from alignment at tig00000027_pilon:463444..465240+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1013.t1 ID=Ggra1013.t1|Name=Ggra1013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000027_pilon:463444..465240+ (Gracilaria gracilis GNS1m male)
ATGGACCCCTCACGCCAAAAATCACTCGAGAAGGCTCGCGCCTTGGAGGA
AAAGGTGCTGCTGAACAATGACGTCGACGCCATGATCGAACTGGCTCGCA
TGCTACTCGAGGATGACGTCTCGCACCATGCCAGAGCCCGTCAAATGTTG
GAAAGAGCCGTGAAACAAGCACAAAATCCCGAGGCTATGTATGTTCTGGC
TGTTTCTCTCATGGAAGAAGAAGATGAGTCACAACAACGGCGCGCTTTTT
CGCTCCTCGAACGCTCCTTGAGAATACAAGAGCATTCTGCCGTACTTCTT
TGCATGGCTCGTTGCTATTCTCAGGGTTTGGGTGTGAAAAGGGATTGCAA
ACTAATGAGGCAGCTGTGCGAACGGTCTTTGCGATTGAAACAAGATCCTT
ATGCAATGGCCTTCTTGGCATCCAACTTGTTGCTATATCCAGAGATGTGC
TCACAAACGAAGCGCGCACTCCAGCTGTTTAGGGAGGCGATTCGTCTTAG
CTCGGACCATGAACTGATGAACAACTTGGCAGTTCTCTATCATGAAGGAC
GCGGTAACTTGAGACCGTGTCCAAAAAGGGCCTCCAAGTGGTATCTTCGC
GCCATTCGCGCATCCAAACAACCATTGACGATGAATAACCTGGCCTGTCT
TCTGCTAGAAAATGACCCCAGTGACAAGAATGTCATCCAAGCCATTGGTA
TGCTTGAAGATGCGCTGCAATGTGATCACGGAAAGAGTGAGTATATATTT
ATATCGCTTGCCGATGCGTATTTGGAACATGGAAATAATGCCCAGCGTGC
GTTTCAGCTGTATGAAGTCGCAGCCATTCGATTCAATTCTAGTGAAGCTC
AATCCCGAATTATCAATTCATTATTAGATGGTACTGATGCTGTTTTCGAC
GACTATGCTCGCATACTGCAGCTCTTCTGGCAAGTCTACAAGACCCATGA
CAGTTTTAATGCACTTATGACCTTTGCAGAAATGTTATGGACGGGTGCAA
AACGTGTTCCAATGAATCGGAAGAAAGCTATCGAGGTCTTGCACTCGTTA
CAATGGAATTGTCATTACTGTTTTTCGTTGATGTTAAGACATGATTTGAG
CAATTACCCCCGGGGAAAGAAGAGGGCCCGAACGCTTCTCCAGCAACTTG
ATGAAAAGATCGACAGATGCGATTTTGGAGGCTCGGAATGCATAGTTCTC
AGCGAAAGCAAGTGTGATAGTGACAAATTGTTGGCGCTGCAAAAGCTTCG
AGCCCAAACGGAAAAGAAACGATCTACTATTGCTTGGTTGGTTCCTCACT
TGCGGGTTGGTCGACACATCTTGCCATTCGATGGCCATCCAGATTGGGTA
ACGGATGTGATGAGGCGGTTCACGCTCTTCAAGAGCATTGATTCGCTAAA
TCTGGCTAGCCTCGTACTTGAAATTGAAGGTGAACAGCAGGAAGCTGTTA
CAGTTCTGGAAGGTCTGATGAGCAGTGATTTGAGGTTGATCGCTATGCTG
AACCTATCGTATATCCTAATGAACGATGTCCAGGGCGTGACAAAGGAGGT
GACAAGAGGAATGAAGCTTTTGGAAGACGCGGTGAAAGAGACAAACGAGG
TTTCCGCTAGAGCGATGCTAGCCAACGCATTGTCAAGAGGACCAGACTCT
GATGCCGGCGATGTGGAAAGAGGATGGAAACTGTGGCAAAGCGTGGAAGA
AGACGTGAATGACGACGAGGAGCTACGAAAAGTTCGACGGCTTATTTCAG
CCGGATGCGAAGAAAATTGGGCTGCACGCGGTTTTGGAAAAGGGTAG

Coding sequence (CDS) from alignment at tig00000027_pilon:463444..465240+

>Ggra1013.t1 ID=Ggra1013.t1|Name=Ggra1013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1797bp|location=Sequence derived from alignment at tig00000027_pilon:463444..465240+ (Gracilaria gracilis GNS1m male)
ATGGACCCCTCACGCCAAAAATCACTCGAGAAGGCTCGCGCCTTGGAGGA
AAAGGTGCTGCTGAACAATGACGTCGACGCCATGATCGAACTGGCTCGCA
TGCTACTCGAGGATGACGTCTCGCACCATGCCAGAGCCCGTCAAATGTTG
GAAAGAGCCGTGAAACAAGCACAAAATCCCGAGGCTATGTATGTTCTGGC
TGTTTCTCTCATGGAAGAAGAAGATGAGTCACAACAACGGCGCGCTTTTT
CGCTCCTCGAACGCTCCTTGAGAATACAAGAGCATTCTGCCGTACTTCTT
TGCATGGCTCGTTGCTATTCTCAGGGTTTGGGTGTGAAAAGGGATTGCAA
ACTAATGAGGCAGCTGTGCGAACGGTCTTTGCGATTGAAACAAGATCCTT
ATGCAATGGCCTTCTTGGCATCCAACTTGTTGCTATATCCAGAGATGTGC
TCACAAACGAAGCGCGCACTCCAGCTGTTTAGGGAGGCGATTCGTCTTAG
CTCGGACCATGAACTGATGAACAACTTGGCAGTTCTCTATCATGAAGGAC
GCGGTAACTTGAGACCGTGTCCAAAAAGGGCCTCCAAGTGGTATCTTCGC
GCCATTCGCGCATCCAAACAACCATTGACGATGAATAACCTGGCCTGTCT
TCTGCTAGAAAATGACCCCAGTGACAAGAATGTCATCCAAGCCATTGGTA
TGCTTGAAGATGCGCTGCAATGTGATCACGGAAAGAGTGAGTATATATTT
ATATCGCTTGCCGATGCGTATTTGGAACATGGAAATAATGCCCAGCGTGC
GTTTCAGCTGTATGAAGTCGCAGCCATTCGATTCAATTCTAGTGAAGCTC
AATCCCGAATTATCAATTCATTATTAGATGGTACTGATGCTGTTTTCGAC
GACTATGCTCGCATACTGCAGCTCTTCTGGCAAGTCTACAAGACCCATGA
CAGTTTTAATGCACTTATGACCTTTGCAGAAATGTTATGGACGGGTGCAA
AACGTGTTCCAATGAATCGGAAGAAAGCTATCGAGGTCTTGCACTCGTTA
CAATGGAATTGTCATTACTGTTTTTCGTTGATGTTAAGACATGATTTGAG
CAATTACCCCCGGGGAAAGAAGAGGGCCCGAACGCTTCTCCAGCAACTTG
ATGAAAAGATCGACAGATGCGATTTTGGAGGCTCGGAATGCATAGTTCTC
AGCGAAAGCAAGTGTGATAGTGACAAATTGTTGGCGCTGCAAAAGCTTCG
AGCCCAAACGGAAAAGAAACGATCTACTATTGCTTGGTTGGTTCCTCACT
TGCGGGTTGGTCGACACATCTTGCCATTCGATGGCCATCCAGATTGGGTA
ACGGATGTGATGAGGCGGTTCACGCTCTTCAAGAGCATTGATTCGCTAAA
TCTGGCTAGCCTCGTACTTGAAATTGAAGGTGAACAGCAGGAAGCTGTTA
CAGTTCTGGAAGGTCTGATGAGCAGTGATTTGAGGTTGATCGCTATGCTG
AACCTATCGTATATCCTAATGAACGATGTCCAGGGCGTGACAAAGGAGGT
GACAAGAGGAATGAAGCTTTTGGAAGACGCGGTGAAAGAGACAAACGAGG
TTTCCGCTAGAGCGATGCTAGCCAACGCATTGTCAAGAGGACCAGACTCT
GATGCCGGCGATGTGGAAAGAGGATGGAAACTGTGGCAAAGCGTGGAAGA
AGACGTGAATGACGACGAGGAGCTACGAAAAGTTCGACGGCTTATTTCAG
CCGGATGCGAAGAAAATTGGGCTGCACGCGGTTTTGGAAAAGGGTAG