Ggra7575.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7575.t1
Unique Name	Ggra7575.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	460

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:101689..103068 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102107.XP_008242225.1
PFAMs	LRR_6
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15082
Evalue	1.94e-10
EggNOG OGs	KOG1947@1\|root,KOG1947@2759\|Eukaryota,37QPY@33090\|Viridiplantae,3GG9G@35493\|Streptophyta,4JFQC@91835\|fabids
Description	Leucine-rich repeats, outliers
COG category	S
BRITE	ko00000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7575	Ggra7575	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 101689..103068 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7575.t1.stop1	Ggra7575.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 101689..101691 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7575.t1.CDS1	Ggra7575.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 101689..103068 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7575.t1.exon1	Ggra7575.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 101689..103068 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7575.t1.start1	Ggra7575.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 103066..103068 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7575.t1	Ggra7575.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 101689..103068 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:101689..103068-
coding sequence from alignment at tig00000866_pilon:101689..103068-

mRNA sequence

>Ggra7575.t1 ID=Ggra7575.t1|Name=Ggra7575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=460bp
MPPFKAQSATRLAAAFSSHLFVAAPSSPPAPSCMSRSPARKRKSCAAVSH
PLHAAAAVAAAAAATAAATPAKRPRRPAMRLLDLSDDALALIVSHVMSPA
REGSRAIVTEDSLRASLPLALTCRTMHSLWRRCMTDLELWVSGRLTDRGL
VSICAASGRSLHRLGLRRCRLSLNAFRAIPRYCPRLRSLDLSHTRVTDDV
IFSLAARCGSSLQFLALHGCTALSSRALRAIADSCTHLRFLDIGAVPAVD
DDTLSYLARARGSSLRTLVLSHCTKLSDTAMGEIGTHCSALMSLTVRSLA
SITDCGLQKLCERIGHRLQILDVLDCTGLTMGGYFSTMEAHCPHVFRYLQ
ESNYVEHLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTL
RPFRVSVQSKSLNLSDFGTVLISNFGKKPTQKTRSVLLSRFGYDSPCDSE
SDDESCGRE*

spliced messenger RNA

>Ggra7575.t1 ID=Ggra7575.t1|Name=Ggra7575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000866_pilon:101689..103068- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTTTAAAGCGCAAAGCGCCACGCGCCTTGCGGCCGCCTTCTC
GTCTCACCTTTTCGTTGCCGCGCCGTCTTCTCCACCAGCGCCCAGCTGCA
TGTCTCGCTCGCCCGCGCGCAAACGCAAGAGCTGCGCCGCTGTCTCTCAC
CCGCTCCACGCCGCCGCCGCCGTCGCCGCTGCTGCCGCCGCCACCGCCGC
CGCCACGCCCGCCAAGCGCCCGCGCCGCCCAGCCATGCGTCTGCTCGACC
TCTCCGACGACGCCCTCGCCCTCATCGTCTCACATGTCATGAGCCCCGCG
CGCGAGGGCTCCCGCGCCATCGTCACCGAGGACAGCCTGCGCGCCAGTCT
GCCGCTCGCGCTCACCTGTCGCACCATGCACTCGCTGTGGCGCCGCTGCA
TGACAGACCTGGAGCTGTGGGTGTCGGGTCGACTCACCGACCGTGGACTC
GTCTCCATATGCGCCGCCAGCGGCCGCTCGCTGCATCGCCTCGGCTTGCG
TCGTTGCCGTCTGTCGCTCAATGCCTTCCGAGCCATTCCGCGTTACTGCC
CGCGCCTCCGCAGCCTGGATCTGTCGCACACGCGCGTCACCGACGACGTC
ATCTTCTCGCTGGCTGCGCGCTGCGGCTCCTCGCTGCAGTTCCTCGCCCT
GCATGGCTGCACCGCGTTGTCGTCGCGCGCCCTGCGTGCCATTGCCGACT
CGTGCACCCATCTGCGCTTCCTGGACATTGGTGCCGTGCCGGCCGTGGAC
GATGACACGCTTTCGTACCTCGCGCGAGCGAGAGGCTCGTCGTTGCGCAC
GCTGGTGCTGTCGCATTGCACCAAGCTGTCCGACACCGCTATGGGCGAGA
TAGGCACGCATTGCAGCGCACTCATGTCGCTCACTGTGCGTTCGCTGGCC
TCCATCACCGACTGTGGGCTGCAAAAGCTGTGCGAACGAATTGGACACCG
CTTGCAGATCCTGGACGTGCTGGACTGTACCGGGCTCACCATGGGCGGTT
ACTTCTCTACCATGGAGGCGCACTGTCCCCATGTGTTTCGCTACCTGCAG
GAAAGTAACTACGTGGAGCATTTGGGAGAGCGTTGCTTACGCGATAACAT
CATCGCCACTATGCCGGGACTAATATACCGCATTTCGGCCACTGATGCTA
TTCGCCGTCTGCCGGCGCTGTACTTCTTGCTGCTGGACGAGAGCACGTTG
CGTCCATTCCGCGTTTCAGTTCAGAGCAAGTCTCTGAATTTGAGCGACTT
TGGCACGGTGCTGATATCCAACTTTGGCAAGAAGCCCACGCAGAAGACAA
GAAGTGTGTTACTCAGCCGATTCGGTTATGACAGCCCGTGTGACTCGGAA
TCTGATGACGAATCGTGTGGCAGGGAATGA

protein sequence of Ggra7575.t1

>Ggra7575.t1 ID=Ggra7575.t1|Name=Ggra7575.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=460bp
MPPFKAQSATRLAAAFSSHLFVAAPSSPPAPSCMSRSPARKRKSCAAVSH
PLHAAAAVAAAAAATAAATPAKRPRRPAMRLLDLSDDALALIVSHVMSPA
REGSRAIVTEDSLRASLPLALTCRTMHSLWRRCMTDLELWVSGRLTDRGL
VSICAASGRSLHRLGLRRCRLSLNAFRAIPRYCPRLRSLDLSHTRVTDDV
IFSLAARCGSSLQFLALHGCTALSSRALRAIADSCTHLRFLDIGAVPAVD
DDTLSYLARARGSSLRTLVLSHCTKLSDTAMGEIGTHCSALMSLTVRSLA
SITDCGLQKLCERIGHRLQILDVLDCTGLTMGGYFSTMEAHCPHVFRYLQ
ESNYVEHLGERCLRDNIIATMPGLIYRISATDAIRRLPALYFLLLDESTL
RPFRVSVQSKSLNLSDFGTVLISNFGKKPTQKTRSVLLSRFGYDSPCDSE
SDDESCGRE*

mRNA from alignment at tig00000866_pilon:101689..103068-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7575.t1 ID=Ggra7575.t1|Name=Ggra7575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000866_pilon:101689..103068- (Gracilaria gracilis GNS1m male)
ATGCCGCCGTTTAAAGCGCAAAGCGCCACGCGCCTTGCGGCCGCCTTCTC
GTCTCACCTTTTCGTTGCCGCGCCGTCTTCTCCACCAGCGCCCAGCTGCA
TGTCTCGCTCGCCCGCGCGCAAACGCAAGAGCTGCGCCGCTGTCTCTCAC
CCGCTCCACGCCGCCGCCGCCGTCGCCGCTGCTGCCGCCGCCACCGCCGC
CGCCACGCCCGCCAAGCGCCCGCGCCGCCCAGCCATGCGTCTGCTCGACC
TCTCCGACGACGCCCTCGCCCTCATCGTCTCACATGTCATGAGCCCCGCG
CGCGAGGGCTCCCGCGCCATCGTCACCGAGGACAGCCTGCGCGCCAGTCT
GCCGCTCGCGCTCACCTGTCGCACCATGCACTCGCTGTGGCGCCGCTGCA
TGACAGACCTGGAGCTGTGGGTGTCGGGTCGACTCACCGACCGTGGACTC
GTCTCCATATGCGCCGCCAGCGGCCGCTCGCTGCATCGCCTCGGCTTGCG
TCGTTGCCGTCTGTCGCTCAATGCCTTCCGAGCCATTCCGCGTTACTGCC
CGCGCCTCCGCAGCCTGGATCTGTCGCACACGCGCGTCACCGACGACGTC
ATCTTCTCGCTGGCTGCGCGCTGCGGCTCCTCGCTGCAGTTCCTCGCCCT
GCATGGCTGCACCGCGTTGTCGTCGCGCGCCCTGCGTGCCATTGCCGACT
CGTGCACCCATCTGCGCTTCCTGGACATTGGTGCCGTGCCGGCCGTGGAC
GATGACACGCTTTCGTACCTCGCGCGAGCGAGAGGCTCGTCGTTGCGCAC
GCTGGTGCTGTCGCATTGCACCAAGCTGTCCGACACCGCTATGGGCGAGA
TAGGCACGCATTGCAGCGCACTCATGTCGCTCACTGTGCGTTCGCTGGCC
TCCATCACCGACTGTGGGCTGCAAAAGCTGTGCGAACGAATTGGACACCG
CTTGCAGATCCTGGACGTGCTGGACTGTACCGGGCTCACCATGGGCGGTT
ACTTCTCTACCATGGAGGCGCACTGTCCCCATGTGTTTCGCTACCTGCAG
GAAAGTAACTACGTGGAGCATTTGGGAGAGCGTTGCTTACGCGATAACAT
CATCGCCACTATGCCGGGACTAATATACCGCATTTCGGCCACTGATGCTA
TTCGCCGTCTGCCGGCGCTGTACTTCTTGCTGCTGGACGAGAGCACGTTG
CGTCCATTCCGCGTTTCAGTTCAGAGCAAGTCTCTGAATTTGAGCGACTT
TGGCACGGTGCTGATATCCAACTTTGGCAAGAAGCCCACGCAGAAGACAA
GAAGTGTGTTACTCAGCCGATTCGGTTATGACAGCCCGTGTGACTCGGAA
TCTGATGACGAATCGTGTGGCAGGGAATGA

Coding sequence (CDS) from alignment at tig00000866_pilon:101689..103068-

>Ggra7575.t1 ID=Ggra7575.t1|Name=Ggra7575.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1380bp|location=Sequence derived from alignment at tig00000866_pilon:101689..103068- (Gracilaria gracilis GNS1m male)
ATGCCGCCGTTTAAAGCGCAAAGCGCCACGCGCCTTGCGGCCGCCTTCTC
GTCTCACCTTTTCGTTGCCGCGCCGTCTTCTCCACCAGCGCCCAGCTGCA
TGTCTCGCTCGCCCGCGCGCAAACGCAAGAGCTGCGCCGCTGTCTCTCAC
CCGCTCCACGCCGCCGCCGCCGTCGCCGCTGCTGCCGCCGCCACCGCCGC
CGCCACGCCCGCCAAGCGCCCGCGCCGCCCAGCCATGCGTCTGCTCGACC
TCTCCGACGACGCCCTCGCCCTCATCGTCTCACATGTCATGAGCCCCGCG
CGCGAGGGCTCCCGCGCCATCGTCACCGAGGACAGCCTGCGCGCCAGTCT
GCCGCTCGCGCTCACCTGTCGCACCATGCACTCGCTGTGGCGCCGCTGCA
TGACAGACCTGGAGCTGTGGGTGTCGGGTCGACTCACCGACCGTGGACTC
GTCTCCATATGCGCCGCCAGCGGCCGCTCGCTGCATCGCCTCGGCTTGCG
TCGTTGCCGTCTGTCGCTCAATGCCTTCCGAGCCATTCCGCGTTACTGCC
CGCGCCTCCGCAGCCTGGATCTGTCGCACACGCGCGTCACCGACGACGTC
ATCTTCTCGCTGGCTGCGCGCTGCGGCTCCTCGCTGCAGTTCCTCGCCCT
GCATGGCTGCACCGCGTTGTCGTCGCGCGCCCTGCGTGCCATTGCCGACT
CGTGCACCCATCTGCGCTTCCTGGACATTGGTGCCGTGCCGGCCGTGGAC
GATGACACGCTTTCGTACCTCGCGCGAGCGAGAGGCTCGTCGTTGCGCAC
GCTGGTGCTGTCGCATTGCACCAAGCTGTCCGACACCGCTATGGGCGAGA
TAGGCACGCATTGCAGCGCACTCATGTCGCTCACTGTGCGTTCGCTGGCC
TCCATCACCGACTGTGGGCTGCAAAAGCTGTGCGAACGAATTGGACACCG
CTTGCAGATCCTGGACGTGCTGGACTGTACCGGGCTCACCATGGGCGGTT
ACTTCTCTACCATGGAGGCGCACTGTCCCCATGTGTTTCGCTACCTGCAG
GAAAGTAACTACGTGGAGCATTTGGGAGAGCGTTGCTTACGCGATAACAT
CATCGCCACTATGCCGGGACTAATATACCGCATTTCGGCCACTGATGCTA
TTCGCCGTCTGCCGGCGCTGTACTTCTTGCTGCTGGACGAGAGCACGTTG
CGTCCATTCCGCGTTTCAGTTCAGAGCAAGTCTCTGAATTTGAGCGACTT
TGGCACGGTGCTGATATCCAACTTTGGCAAGAAGCCCACGCAGAAGACAA
GAAGTGTGTTACTCAGCCGATTCGGTTATGACAGCCCGTGTGACTCGGAA
TCTGATGACGAATCGTGTGGCAGGGAATGA