Ggra9324.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9324.t1
Unique NameGgra9324.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:818458..824204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog103733.JNYO01000016_gene3342
PFAMsDUF1768
Max annot lvl201174|Actinobacteria
KEGG koko:K09935
Evalue7.17e-50
EggNOG OGsCOG5113@1|root,COG3236@2|Bacteria,2HQRT@201174|Actinobacteria,4E3MW@85010|Pseudonocardiales
DescriptionDomain of unknown function (DUF1768)
COG categoryO
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9324Ggra9324Gracilaria gracilis GNS1m malegenetig00000863_pilon 818458..824204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9324.t1Ggra9324.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 818458..824204 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9324.t1.start1Ggra9324.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 818458..818460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9324.t1.CDS1Ggra9324.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 818458..819313 +
Ggra9324.t1.CDS2Ggra9324.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 823672..824204 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9324.t1.exon1Ggra9324.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 818458..819313 +
Ggra9324.t1.exon2Ggra9324.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 823672..824204 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9324.t1.intron1Ggra9324.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 819314..823671 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9324.t1.stop1Ggra9324.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 824202..824204 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=463bp
MESVTNPVKAQYQSIPGVPGTAASYAQVPGGLIRNVNSIPLFRRFGSLVG
LAVTVSLLAFVAGRAGIIERENGFRVSHLYPALPRKLHEARHFKFSNYPS
LSRPLHSSYGSRLNPDSFISESVVHSDASSTLEDFTLDERVPTRQCGRRR
VCRARLTVVKEGSAVVIKAGYYIYTKDGKVRTVDRGTRSRLRKTTTKQAR
NWASKLLSGAGARLAEVNCTVSVNDIAEAILDGKDGVLTCPKTGDSRCDA
LKTIGECTIPEAKEVDPCTEFVKTSAGVDSLAELQGFEAQASFVFFYGHD
AAHGPQAMLSNFWRCPEPFTHSENRRYPTSEHYMMHGKAVLFGDEQRATA
ILNASTPRSAKALGRKVRNFEAETWAQHRLQIVAEGCLLKFAQCEEARRF
LLATGDRILVEAAPRDCIWGIGIGASHAHRCDPSKWRGLNLLGEALMMVR
DRLRENHEDCSE*
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spliced messenger RNA

>Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1389bp|location=Sequence derived from alignment at tig00000863_pilon:818458..824204+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCTGTCACAAACCCCGTTAAAGCTCAATACCAGTCTATCCCGGG
CGTTCCAGGCACTGCCGCTTCTTATGCGCAAGTTCCAGGCGGTTTGATCC
GAAATGTTAACTCTATTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGGA
CTGGCTGTAACCGTGTCGTTATTGGCATTTGTAGCGGGAAGAGCAGGAAT
CATCGAACGTGAAAATGGCTTTCGTGTATCCCACCTATATCCCGCGCTTC
CGAGGAAGCTTCATGAGGCTCGTCACTTTAAGTTCAGTAATTATCCTTCA
CTGTCCCGGCCTTTGCACTCAAGCTATGGTTCTCGTCTCAATCCCGACAG
CTTCATCTCCGAATCAGTTGTGCACAGCGACGCTTCTTCCACTTTAGAAG
ACTTCACTTTGGATGAAAGGGTTCCAACGAGACAGTGCGGCAGGAGAAGG
GTCTGTAGAGCCCGATTGACTGTGGTCAAGGAGGGGTCTGCAGTTGTTAT
CAAGGCCGGTTACTACATCTACACCAAAGATGGAAAGGTTCGCACTGTTG
ACCGAGGCACTAGATCGAGGCTCAGAAAGACTACGACCAAACAAGCTCGG
AATTGGGCGAGTAAGCTGCTTAGTGGCGCCGGCGCTCGATTGGCAGAGGT
TAATTGCACTGTCAGTGTGAATGACATAGCGGAAGCAATCTTGGATGGCA
AAGATGGCGTGCTCACCTGTCCGAAAACCGGCGACTCTCGTTGCGATGCG
CTGAAGACGATCGGGGAATGCACCATACCAGAGGCGAAGGAGGTGGACCC
ATGCACAGAGTTTGTGAAAACTTCTGCAGGCGTGGACAGTTTGGCAGAGC
TGCAGGGGTTCGAGGCGCAGGCTTCTTTTGTGTTCTTTTACGGTCACGAT
GCTGCGCATGGACCGCAAGCTATGCTCTCAAACTTCTGGCGTTGTCCAGA
GCCTTTCACACATTCTGAAAATCGTCGATATCCAACCTCAGAGCACTACA
TGATGCATGGCAAAGCTGTTCTCTTCGGAGACGAACAACGGGCGACCGCT
ATTTTGAACGCCTCCACGCCGCGCTCCGCAAAAGCGCTTGGGCGAAAAGT
ACGCAACTTTGAAGCAGAAACTTGGGCACAACATCGTCTGCAAATTGTGG
CGGAGGGATGTCTGCTGAAGTTTGCGCAGTGCGAGGAGGCGCGTCGTTTT
TTACTGGCTACCGGCGATCGCATATTGGTGGAAGCAGCGCCGAGGGACTG
CATCTGGGGCATAGGAATTGGTGCATCGCACGCTCACAGATGCGATCCAT
CGAAATGGAGAGGACTGAATTTGCTTGGAGAAGCGCTCATGATGGTGCGA
GATCGCCTTCGAGAGAACCATGAAGACTGCAGCGAATAG
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protein sequence of Ggra9324.t1

>Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=463bp
MESVTNPVKAQYQSIPGVPGTAASYAQVPGGLIRNVNSIPLFRRFGSLVG
LAVTVSLLAFVAGRAGIIERENGFRVSHLYPALPRKLHEARHFKFSNYPS
LSRPLHSSYGSRLNPDSFISESVVHSDASSTLEDFTLDERVPTRQCGRRR
VCRARLTVVKEGSAVVIKAGYYIYTKDGKVRTVDRGTRSRLRKTTTKQAR
NWASKLLSGAGARLAEVNCTVSVNDIAEAILDGKDGVLTCPKTGDSRCDA
LKTIGECTIPEAKEVDPCTEFVKTSAGVDSLAELQGFEAQASFVFFYGHD
AAHGPQAMLSNFWRCPEPFTHSENRRYPTSEHYMMHGKAVLFGDEQRATA
ILNASTPRSAKALGRKVRNFEAETWAQHRLQIVAEGCLLKFAQCEEARRF
LLATGDRILVEAAPRDCIWGIGIGASHAHRCDPSKWRGLNLLGEALMMVR
DRLRENHEDCSE*
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mRNA from alignment at tig00000863_pilon:818458..824204+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5747bp|location=Sequence derived from alignment at tig00000863_pilon:818458..824204+ (Gracilaria gracilis GNS1m male)
ATGGAGTCTGTCACAAACCCCGTTAAAGCTCAATACCAGTCTATCCCGGG CGTTCCAGGCACTGCCGCTTCTTATGCGCAAGTTCCAGGCGGTTTGATCC GAAATGTTAACTCTATTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGGA CTGGCTGTAACCGTGTCGTTATTGGCATTTGTAGCGGGAAGAGCAGGAAT CATCGAACGTGAAAATGGCTTTCGTGTATCCCACCTATATCCCGCGCTTC CGAGGAAGCTTCATGAGGCTCGTCACTTTAAGTTCAGTAATTATCCTTCA CTGTCCCGGCCTTTGCACTCAAGCTATGGTTCTCGTCTCAATCCCGACAG CTTCATCTCCGAATCAGTTGTGCACAGCGACGCTTCTTCCACTTTAGAAG ACTTCACTTTGGATGAAAGGGTTCCAACGAGACAGTGCGGCAGGAGAAGG GTCTGTAGAGCCCGATTGACTGTGGTCAAGGAGGGGTCTGCAGTTGTTAT CAAGGCCGGTTACTACATCTACACCAAAGATGGAAAGGTTCGCACTGTTG ACCGAGGCACTAGATCGAGGCTCAGAAAGACTACGACCAAACAAGCTCGG AATTGGGCGAGTAAGCTGCTTAGTGGCGCCGGCGCTCGATTGGCAGAGGT TAATTGCACTGTCAGTGTGAATGACATAGCGGAAGCAATCTTGGATGGCA AAGATGGCGTGCTCACCTGTCCGAAAACCGGCGACTCTCGTTGCGATGCG CTGAAGACGATCGGGGAATGCACCATACCAGAGGCGAAGGAGGTGGACCC ATGCACAGAGTTTGTGAAAACTTCTGCAGGCGTGGACAGTTTGGCAGAGC TGCAGGGTGAATGTCCGACGGCCAAGTTCATGTACAACCGAGTCGGCGTT TCTCTTCCTTTCTGCACAACtgagtgcagttccaatccaggtgtggcaca caatgtgtatttggatttctacttgcaatcaaacttgccatcggaaaaca aagcggactgcctttctgcaactcttatcccggcgtaccagtattttgcg cagacagttctggcgtgtgattctgtaccacctggaCATGCATCGGAAGG AAGGGTCATAATTGATCTTGCGAATAGTTATCAAGGTACCGCGCCAAAAG AACTGGTGGACGCTGCCGAATCGCACGGTTGCACATTTACTTATGCTTAC TACGTTGGTTCAGGGAGTTCAGTGGAGGATATAGTTAATGCTAGCTGTGC AGCTGAGTAGTGGGGCGATGGTAGAAAAGGACGATGAAAAGCGTAGGGGA GGCAATTGACACGGTTGGTTTAGTTATTTGTTttattgctctcttacgat aggctgtatatggtatatcttttgttttgagcaagtgtaggagacacaga gcacgcagcacttacgcactgtgctccaatagcGTCTGCAGACTGCCAAG TCAGCAGTCGCACTGAGATTCACCACCCGTCCACCTTCCGATGGAACACA GCGACACTTGTCCATCTTTATGTGGGGGATGTGAATCCATCACATTGTTG GGGAGCCAACCAAAGCACGTACAAATTTCTAATGCTGAATCGCTATTTTT TAAGAAATGAAATTATGTAAACATTATTcattacagtttatgcgacaaca tagctttctacgttgctttcctgttttttatacaaagggtataaatactg tgcaactcaaccgtctgtgacctcacgaagagctcttcgttcgcatctac caacggtacccatggtacggctgcgtacgcgcctgctcgagtagggcgct catccgatcgtagttcggcggcacctttccgattgcctcgtgcaccaacg ctctgataaaatccgggatcggcgtaccgcggtggatcctcatcttgtcc gcctcttcaaagttcttcagcacaacagcatgctgcttaggagtgaggtt ataccacgggtaataggccaccctcccgtgcggtacgagcccgtcgtagt cgtatcggaacaagccccccatcatgttcagcaaatctcctacatcattg gctggatgactcacctgcagctcgcgcgattgaacgaaatcagtgagtag gaaccaatcgctttcttggtccaaaccgcgcatgactttgctctccttaa tggcgccgtgcgtaacattcaggctgtgtagcttTGACTGATTGAATGGA CGCAGGGCCACGGCAAATATCGATGTTTTTCGATATCACAAgaacgtcca agaaacaatcattgaagagaatcatgttgttcagctgaaatctagcttga aaatttgttacacaaaagttgcgattgcccaagacacggacgtgaaggaa tcatccgtttattgtgtaagttaatcgcctgtaatcgctcaaaactggct gttttgagctaaagtagagaatgcttaatcaaaatctgccgcaaaaatat tggtctgcttttttttgtgatctccttcaaaatcggcagagaagcgaaat ctaTATAATGTTATATAAAACAAGTGGAAGCGGCCTCCGGCCGCGTGCGG CGCTTTGCGCCGCGGGCGAAAAGATGATATCCCACACGATAGCAGCAAAA TATGGGCGCACCAAACGGGTGCGCCAGCGGACCATTTTTGTTTTTTGAAC TGATGACTTTTCTTTGCGAAGAATGCTAGATATTTTTTTATTTTGTACTT TATGCTCGTGTATTCACTCAAGGTTTCTGGGATTTTACAGAATGGTTTCA ATCTGATGAAAACACATTTTATACAGATTAAATTATTCCAGTTCAATAAT CATATATACAAAGAATGTGTTGCAAACTTAATGGCTTCTCAATCTAACGT TCAACAAATTAGCTTACGGCTGGAAAATACACACAATTGGATTGCTTTCC TTTTTGTTCATTTGTACATTTTAACGGCAATAAAAAATGACAAAAAATGA CAAAACATTCGAATCTATCACACTTTTTCACGCAACGCGCCGCTTTTTTA TAAACGACCTCCATCCCAGTTCGCAAAATAGTAAAGCTATTCCCAAAATA TGTCCAAGTTCTAAGCCTTATAATGACTAGAGTAAGTAGGAAAATAATTG ACCACTTTATGCCTTCGTTCAATCAACAAACCAATTGCTTCACGCACTGA TAATCCAGAATGGCACTGTTTTAATTAAAAACATTTACGTGTAcagacgt attcccaactgcaggtgcaggcgtgatttcatcctcaacgtgaattctcc ctctcgacgcgcgtgggatttcgttcgaatatccgcgatcacggaaagac actgaaccctgtgcagccctccgttcattaattgtcgcacccttagagct cccagaacttgtatgagatttgtttgatcgaccacgagtgggaaatactg attcggatggactatctcgctcagctctgacgtttctcgaagcatgccct ggtttggacttttttcggaattggcttctccggattgaggaggaagtgta tagacattctgttaagaggtcgtttacgaccgtggtttccccgtcctcca gaggagccttgtgagtgaaagctcatggttaatacttgaGAGTGGTAGAG TTTTGGAGCTATAAACTTGCGTGTCACCGGTGAGTTCCTGTGACTTTATG CTGGGATGGGAAAACGTAGATGTGTCTATATTGGGAACGTAACACAATTT GTTGCCGAAAAACAATACGCCGTGTGACATATGTCGGGCAACTTTTGCTT CCTTTGAGAGAGGAAAGACTGTTTTTTTAGATCATATGAGTAGTAGCAAA TGAGGTGCCAGGAAGACGCATCTCTAGAGGGGTAGGGGTACATGGTATAC CTTTTGTTGTATGAACGATACACGTTCGTTACCGAACGCTTTTTAATCGC TCTACCATATCCAAATAAATTCTCATAGCCGTTGGACCTCTTAGCTCCAA CGGCATATACTACTGCCGTTACAATAACTAAGGATCATGGTTGCTGTGCT AGCGTATGTAAACTGGCAGAATACATGGCTTTCAAAACGTGAACAAAATA ATGCTTTGGCTAACAACAACAACACCTGCTATCGATATGTGAGTAAACGT GGGTACACATTAAATGATCAACCTAGTATACCATTGatgagctaaagtgt agtgaaccgggtagaaagagcggcagggccgtggttcgcaccacgaaccc caggcccacacaaagagcacacgaaggcgcttaccgattgagctatggcc gctcacggtgtggtgaccccgtgttacaccgccggaagtgttatcgtgaT TGACGCACCACAATAAATGCTCTTTACACATCGAATTCTCGGCATCTCCA AGGGTCACTAATAATTGCACTTGAAAATGTGGATGAAAACATATTGATGG CGACACCGGAAGCGAAATATCGACAATGGCCTGCTTTTTGGCCTCAACAA ATTTATACGCGTCAAACAAGCTGTCTGAAAGAAGTATACATGTACAAATC TCGTAACCGATTGCAGCTTGCAACGTAGATTCGAAAACTTAGACAAATAC GTAAAAGGCATCAAAGAGCTCTTGCAAGCACAAGATGCACTTTAAAACGA ATGGGAATCATAAAACTCATTGTACGTCGACGTAGCCTGAAATAGGCAAA ATCGTTTTTTCTTTGGCACACGGACGTGGACAATTATAATCAGAAACAAG AAGAAAGCGCTTTTAATGATTTCTATTTGTGATTTCAGCTCACGTCCATT ATCCCACTCTGCTCGCAAAGCCAGAACTAAAGAAGCACTTCTCTGAAAGA ATATCACAACACTAGCAGCGGGTTGATAATATCAACTTGATATAATAGAT CATCATGAATAATGGTGACATAATTTTCTAAAATTTTGTGGGATACGTTT CTGAAATGCGAGGAAGGACACGAACAACACATATCAGACGTGTCGTTTCA TTGTTGTTGTTGCGCGTAACTGCGTAACTGCATAATTCAAACGGAGCGCA GCAAGGCCTCGCAGGATGCGTTGGCAGCCAAGAAAGCCTTTTACACTTGT ACACTTGGTGTACAGCGGTAGCGTTTCCTTGGTTCGTGCACCTTCGTATA TGAATATAAGCCAGTCAAGCCAAACACCTGGTTTCGAAGGAATCGTCCGA TAGCAGCGCTGGGCAACCCGATATGGAAGGTAGGGCGTATTCTCGTTCGG CTCTCGTGGCGCAGGGTTCGAGGCGCAGGCTTCTTTTGTGTTCTTTTACG GTCACGATGCTGCGCATGGACCGCAAGCTATGCTCTCAAACTTCTGGCGT TGTCCAGAGCCTTTCACACATTCTGAAAATCGTCGATATCCAACCTCAGA GCACTACATGATGCATGGCAAAGCTGTTCTCTTCGGAGACGAACAACGGG CGACCGCTATTTTGAACGCCTCCACGCCGCGCTCCGCAAAAGCGCTTGGG CGAAAAGTACGCAACTTTGAAGCAGAAACTTGGGCACAACATCGTCTGCA AATTGTGGCGGAGGGATGTCTGCTGAAGTTTGCGCAGTGCGAGGAGGCGC GTCGTTTTTTACTGGCTACCGGCGATCGCATATTGGTGGAAGCAGCGCCG AGGGACTGCATCTGGGGCATAGGAATTGGTGCATCGCACGCTCACAGATG CGATCCATCGAAATGGAGAGGACTGAATTTGCTTGGAGAAGCGCTCATGA TGGTGCGAGATCGCCTTCGAGAGAACCATGAAGACTGCAGCGAATAG
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Coding sequence (CDS) from alignment at tig00000863_pilon:818458..824204+

>Ggra9324.t1 ID=Ggra9324.t1|Name=Ggra9324.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1389bp|location=Sequence derived from alignment at tig00000863_pilon:818458..824204+ (Gracilaria gracilis GNS1m male)
ATGGAGTCTGTCACAAACCCCGTTAAAGCTCAATACCAGTCTATCCCGGG
CGTTCCAGGCACTGCCGCTTCTTATGCGCAAGTTCCAGGCGGTTTGATCC
GAAATGTTAACTCTATTCCGCTCTTTCGCCGTTTTGGAAGCTTGGTTGGA
CTGGCTGTAACCGTGTCGTTATTGGCATTTGTAGCGGGAAGAGCAGGAAT
CATCGAACGTGAAAATGGCTTTCGTGTATCCCACCTATATCCCGCGCTTC
CGAGGAAGCTTCATGAGGCTCGTCACTTTAAGTTCAGTAATTATCCTTCA
CTGTCCCGGCCTTTGCACTCAAGCTATGGTTCTCGTCTCAATCCCGACAG
CTTCATCTCCGAATCAGTTGTGCACAGCGACGCTTCTTCCACTTTAGAAG
ACTTCACTTTGGATGAAAGGGTTCCAACGAGACAGTGCGGCAGGAGAAGG
GTCTGTAGAGCCCGATTGACTGTGGTCAAGGAGGGGTCTGCAGTTGTTAT
CAAGGCCGGTTACTACATCTACACCAAAGATGGAAAGGTTCGCACTGTTG
ACCGAGGCACTAGATCGAGGCTCAGAAAGACTACGACCAAACAAGCTCGG
AATTGGGCGAGTAAGCTGCTTAGTGGCGCCGGCGCTCGATTGGCAGAGGT
TAATTGCACTGTCAGTGTGAATGACATAGCGGAAGCAATCTTGGATGGCA
AAGATGGCGTGCTCACCTGTCCGAAAACCGGCGACTCTCGTTGCGATGCG
CTGAAGACGATCGGGGAATGCACCATACCAGAGGCGAAGGAGGTGGACCC
ATGCACAGAGTTTGTGAAAACTTCTGCAGGCGTGGACAGTTTGGCAGAGC
TGCAGGGGTTCGAGGCGCAGGCTTCTTTTGTGTTCTTTTACGGTCACGAT
GCTGCGCATGGACCGCAAGCTATGCTCTCAAACTTCTGGCGTTGTCCAGA
GCCTTTCACACATTCTGAAAATCGTCGATATCCAACCTCAGAGCACTACA
TGATGCATGGCAAAGCTGTTCTCTTCGGAGACGAACAACGGGCGACCGCT
ATTTTGAACGCCTCCACGCCGCGCTCCGCAAAAGCGCTTGGGCGAAAAGT
ACGCAACTTTGAAGCAGAAACTTGGGCACAACATCGTCTGCAAATTGTGG
CGGAGGGATGTCTGCTGAAGTTTGCGCAGTGCGAGGAGGCGCGTCGTTTT
TTACTGGCTACCGGCGATCGCATATTGGTGGAAGCAGCGCCGAGGGACTG
CATCTGGGGCATAGGAATTGGTGCATCGCACGCTCACAGATGCGATCCAT
CGAAATGGAGAGGACTGAATTTGCTTGGAGAAGCGCTCATGATGGTGCGA
GATCGCCTTCGAGAGAACCATGAAGACTGCAGCGAATAG
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