Ggra9309.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9309.t1
Unique NameGgra9309.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:487257..488435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9309Ggra9309Gracilaria gracilis GNS1m malegenetig00000863_pilon 487257..488435 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9309.t1.start1Ggra9309.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 487257..487259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9309.t1.CDS1Ggra9309.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 487257..488435 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9309.t1.exon1Ggra9309.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 487257..488435 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9309.t1.stop1Ggra9309.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 488433..488435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9309.t1Ggra9309.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 487257..488435 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9309.t1 ID=Ggra9309.t1|Name=Ggra9309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MVRVLKRGADIEAIGQNGDTALICAAAKGHLTLVKVLLARGAQVTARNDM
GVTALIYASHRGDVEVVEALIKGGADVNQDSYFGAPLHQAARNGHEKVAE
ALLAGGASIDPTHEMSTPLHVAALSDQVAMVEALLASGADVHRTDECGCT
PLHCAAKTGNLQAALVLWRAGADLSQKCDLGDTPLSCLLEIYGETNAVKL
MHDTRRLHRAPFSADEAKLRKRITELASKSPSDRQTVTAQDAVPELRKVL
QQHLRRTFSGLTVHEDEVEDVVVNQMDQSTGSVSVHGVIKSFHVLRRKYQ
EPPELRVRFKKATRSKNVLRTKVAKRMLRALFEESGTENCSPKSPIFFVR
SSNKWNESDVDALLADKKHDKKGIDEESFVNVAMAVLFAEKA*
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spliced messenger RNA

>Ggra9309.t1 ID=Ggra9309.t1|Name=Ggra9309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000863_pilon:487257..488435+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAGGGTGCTGAAACGCGGTGCCGACATCGAAGCTATTGGCCAGAA
TGGCGACACTGCGCTAATATGCGCCGCAGCAAAAGGGCATCTCACTCTAG
TCAAAGTGCTGCTAGCCCGCGGCGCACAAGTGACTGCCAGGAATGATATG
GGCGTAACGGCGTTGATCTATGCCTCTCACCGTGGGGATGTAGAAGTGGT
AGAAGCGCTAATCAAAGGAGGAGCTGATGTGAACCAGGACAGCTATTTCG
GAGCGCCGTTGCACCAAGCCGCCCGAAATGGACATGAGAAAGTTGCGGAG
GCGCTGCTAGCAGGCGGCGCAAGCATTGACCCAACACACGAAATGAGCAC
GCCGTTGCATGTAGCCGCTCTTTCCGATCAAGTTGCAATGGTAGAAGCGC
TGTTGGCCAGTGGTGCAGACGTTCACCGCACCGACGAGTGTGGATGTACC
CCGCTTCACTGCGCCGCTAAAACTGGCAATCTTCAAGCAGCGCTTGTACT
CTGGCGTGCCGGTGCTGACCTGTCGCAAAAGTGTGATCTCGGAGACACAC
CGCTGTCGTGCTTGTTGGAAATATATGGAGAAACAAATGCCGTGAAACTG
ATGCACGATACCCGGCGACTCCATCGTGCCCCTTTCTCTGCTGATGAAGC
CAAGTTGCGGAAAAGAATCACAGAGCTGGCATCTAAATCTCCCTCCGACA
GACAAACAGTCACTGCACAAGATGCTGTACCAGAGTTGCGAAAAGTTTTG
CAGCAGCATCTCCGTCGAACGTTTTCTGGCCTTACTGTGCACGAGGATGA
AGTAGAGGATGTTGTCGTCAATCAAATGGATCAGAGTACAGGTTCAGTGA
GCGTGCATGGGGTCATTAAGTCTTTTCATGTGTTGCGAAGAAAATACCAG
GAACCACCAGAATTACGGGTCAGGTTTAAGAAAGCCACACGATCGAAGAA
CGTGTTGAGGACTAAAGTAGCCAAACGGATGTTGCGAGCGTTGTTTGAAG
AGTCTGGCACAGAGAATTGTTCCCCAAAATCTCCAATATTCTTCGTAAGA
AGCAGTAACAAGTGGAACGAATCTGACGTGGATGCACTTCTTGCTGATAA
AAAGCACGACAAAAAGGGTATTGATGAGGAATCGTTTGTAAACGTGGCTA
TGGCAGTTTTGTTTGCAGAGAAGGCTTGA
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protein sequence of Ggra9309.t1

>Ggra9309.t1 ID=Ggra9309.t1|Name=Ggra9309.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MVRVLKRGADIEAIGQNGDTALICAAAKGHLTLVKVLLARGAQVTARNDM
GVTALIYASHRGDVEVVEALIKGGADVNQDSYFGAPLHQAARNGHEKVAE
ALLAGGASIDPTHEMSTPLHVAALSDQVAMVEALLASGADVHRTDECGCT
PLHCAAKTGNLQAALVLWRAGADLSQKCDLGDTPLSCLLEIYGETNAVKL
MHDTRRLHRAPFSADEAKLRKRITELASKSPSDRQTVTAQDAVPELRKVL
QQHLRRTFSGLTVHEDEVEDVVVNQMDQSTGSVSVHGVIKSFHVLRRKYQ
EPPELRVRFKKATRSKNVLRTKVAKRMLRALFEESGTENCSPKSPIFFVR
SSNKWNESDVDALLADKKHDKKGIDEESFVNVAMAVLFAEKA*
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mRNA from alignment at tig00000863_pilon:487257..488435+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9309.t1 ID=Ggra9309.t1|Name=Ggra9309.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000863_pilon:487257..488435+ (Gracilaria gracilis GNS1m male)
ATGGTCAGGGTGCTGAAACGCGGTGCCGACATCGAAGCTATTGGCCAGAA
TGGCGACACTGCGCTAATATGCGCCGCAGCAAAAGGGCATCTCACTCTAG
TCAAAGTGCTGCTAGCCCGCGGCGCACAAGTGACTGCCAGGAATGATATG
GGCGTAACGGCGTTGATCTATGCCTCTCACCGTGGGGATGTAGAAGTGGT
AGAAGCGCTAATCAAAGGAGGAGCTGATGTGAACCAGGACAGCTATTTCG
GAGCGCCGTTGCACCAAGCCGCCCGAAATGGACATGAGAAAGTTGCGGAG
GCGCTGCTAGCAGGCGGCGCAAGCATTGACCCAACACACGAAATGAGCAC
GCCGTTGCATGTAGCCGCTCTTTCCGATCAAGTTGCAATGGTAGAAGCGC
TGTTGGCCAGTGGTGCAGACGTTCACCGCACCGACGAGTGTGGATGTACC
CCGCTTCACTGCGCCGCTAAAACTGGCAATCTTCAAGCAGCGCTTGTACT
CTGGCGTGCCGGTGCTGACCTGTCGCAAAAGTGTGATCTCGGAGACACAC
CGCTGTCGTGCTTGTTGGAAATATATGGAGAAACAAATGCCGTGAAACTG
ATGCACGATACCCGGCGACTCCATCGTGCCCCTTTCTCTGCTGATGAAGC
CAAGTTGCGGAAAAGAATCACAGAGCTGGCATCTAAATCTCCCTCCGACA
GACAAACAGTCACTGCACAAGATGCTGTACCAGAGTTGCGAAAAGTTTTG
CAGCAGCATCTCCGTCGAACGTTTTCTGGCCTTACTGTGCACGAGGATGA
AGTAGAGGATGTTGTCGTCAATCAAATGGATCAGAGTACAGGTTCAGTGA
GCGTGCATGGGGTCATTAAGTCTTTTCATGTGTTGCGAAGAAAATACCAG
GAACCACCAGAATTACGGGTCAGGTTTAAGAAAGCCACACGATCGAAGAA
CGTGTTGAGGACTAAAGTAGCCAAACGGATGTTGCGAGCGTTGTTTGAAG
AGTCTGGCACAGAGAATTGTTCCCCAAAATCTCCAATATTCTTCGTAAGA
AGCAGTAACAAGTGGAACGAATCTGACGTGGATGCACTTCTTGCTGATAA
AAAGCACGACAAAAAGGGTATTGATGAGGAATCGTTTGTAAACGTGGCTA
TGGCAGTTTTGTTTGCAGAGAAGGCTTGA
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Coding sequence (CDS) from alignment at tig00000863_pilon:487257..488435+

>Ggra9309.t1 ID=Ggra9309.t1|Name=Ggra9309.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000863_pilon:487257..488435+ (Gracilaria gracilis GNS1m male)
ATGGTCAGGGTGCTGAAACGCGGTGCCGACATCGAAGCTATTGGCCAGAA
TGGCGACACTGCGCTAATATGCGCCGCAGCAAAAGGGCATCTCACTCTAG
TCAAAGTGCTGCTAGCCCGCGGCGCACAAGTGACTGCCAGGAATGATATG
GGCGTAACGGCGTTGATCTATGCCTCTCACCGTGGGGATGTAGAAGTGGT
AGAAGCGCTAATCAAAGGAGGAGCTGATGTGAACCAGGACAGCTATTTCG
GAGCGCCGTTGCACCAAGCCGCCCGAAATGGACATGAGAAAGTTGCGGAG
GCGCTGCTAGCAGGCGGCGCAAGCATTGACCCAACACACGAAATGAGCAC
GCCGTTGCATGTAGCCGCTCTTTCCGATCAAGTTGCAATGGTAGAAGCGC
TGTTGGCCAGTGGTGCAGACGTTCACCGCACCGACGAGTGTGGATGTACC
CCGCTTCACTGCGCCGCTAAAACTGGCAATCTTCAAGCAGCGCTTGTACT
CTGGCGTGCCGGTGCTGACCTGTCGCAAAAGTGTGATCTCGGAGACACAC
CGCTGTCGTGCTTGTTGGAAATATATGGAGAAACAAATGCCGTGAAACTG
ATGCACGATACCCGGCGACTCCATCGTGCCCCTTTCTCTGCTGATGAAGC
CAAGTTGCGGAAAAGAATCACAGAGCTGGCATCTAAATCTCCCTCCGACA
GACAAACAGTCACTGCACAAGATGCTGTACCAGAGTTGCGAAAAGTTTTG
CAGCAGCATCTCCGTCGAACGTTTTCTGGCCTTACTGTGCACGAGGATGA
AGTAGAGGATGTTGTCGTCAATCAAATGGATCAGAGTACAGGTTCAGTGA
GCGTGCATGGGGTCATTAAGTCTTTTCATGTGTTGCGAAGAAAATACCAG
GAACCACCAGAATTACGGGTCAGGTTTAAGAAAGCCACACGATCGAAGAA
CGTGTTGAGGACTAAAGTAGCCAAACGGATGTTGCGAGCGTTGTTTGAAG
AGTCTGGCACAGAGAATTGTTCCCCAAAATCTCCAATATTCTTCGTAAGA
AGCAGTAACAAGTGGAACGAATCTGACGTGGATGCACTTCTTGCTGATAA
AAAGCACGACAAAAAGGGTATTGATGAGGAATCGTTTGTAAACGTGGCTA
TGGCAGTTTTGTTTGCAGAGAAGGCTTGA
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