Ggra9303.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9303.t1
Unique NameGgra9303.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length248
Homology
BLAST of Ggra9303.t1 vs. uniprot
Match: A0A2V3IH58 (NB-ARC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH58_9FLOR)

HSP 1 Score: 94.7 bits (234), Expect = 1.820e-18
Identity = 48/141 (34.04%), Postives = 82/141 (58.16%), Query Frame = 0
Query:   77 ESDVRSNSS-----YSQREWWTVEDEDKYVHNNTCRLLNESGNQEELLWLVHKPQWIIKRLRENGAFAVERDIAIAMRVLEQSQMEQKDEMKSSLEAIAEASSMGGQAVRENPRHAWLQLYTTLLPHAHKSETLRRFVDEV 212
            E+D + N+      Y+ R WW VED D ++H+N CR+L  +G  +ELLWL+ + QW++ RL++ G   VE+D+AI  +V E+ +  +   +   L+ +  A+ +   AV EN   AW Q+Y  ++ +A   E  + F+ E+
Sbjct:  602 ENDAQGNTGEIEKGYTFRPWWNVED-DGFIHDNVCRILQGAGESKELLWLLERAQWVVMRLQKVGISRVEQDLAIGRKVSEKDKSNETA-IGRYLKLVGSAARLSFAAVNENAYEAWFQMYGRMVWYAKHCERTQIFLSEI 740          
BLAST of Ggra9303.t1 vs. uniprot
Match: A0A2V3IKX0 (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKX0_9FLOR)

HSP 1 Score: 90.5 bits (223), Expect = 5.140e-17
Identity = 51/167 (30.54%), Postives = 87/167 (52.10%), Query Frame = 0
Query:   46 GETTDGSRSGIRKYLDTLWCWKIQQPRGEAVESDVRSNSSYSQREWWTVEDEDKYVHNNTCRLLNESGNQEELLWLVHKPQWIIKRLRENGAFAVERDIAIAMRVLEQSQMEQKDEMKSSLEAIAEASSMGGQAVRENPRHAWLQLYTTLLPHAHKSETLRRFVDEV 212
            G  T+  ++ +++Y         ++ R    E +  +  S     WW VED D ++ +N CR+L E+   EEL+WL+ + QWI+ RL++ G   VE+D+AI ++V E++      E+   L  I  A+ M  + + E    AW Q+Y  ++ +A   E  RRF  E+
Sbjct:  526 GRMTEWFKALLKRYAPK------ERTRTTGSEIEASNEESVMFTPWWEVED-DGFIQDNLCRVLQEANETEELVWLLERAQWIVMRLQKCGIRGVEQDLAIGLQVAERNGAGDA-ELIRYLRLIGNAAGMSSKYLVETTYEAWFQIYGRMIWYAEHCERTRRFTCEI 684          
BLAST of Ggra9303.t1 vs. uniprot
Match: A0A2V3IDG2 (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDG2_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 1.080e-14
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = 0
Query:  117 ELLWLVHKPQWIIKRLRENGAFAVERDIAIAMRVLEQSQMEQKDEMKSSLEAIAEASSMGGQAVRENPRHAWLQLYTTLLPHAHKSETLRRFVDEV 212
            +++ L+  PQWI++RLR  G FAVE DIAI +  L    +++ +++K+SL  +AEA+ +   AV  NP  A+ QLY  L+ +A K E  ++FVDE+
Sbjct:    3 QVIRLLFTPQWIVRRLRAYGIFAVESDIAIGIEALHAMHVDRVEDVKTSLRIVAEAARLSVHAVTRNPHEAYFQLYGRLVSYASKCEVTKKFVDEL 98          
BLAST of Ggra9303.t1 vs. uniprot
Match: A0A2V3IR94 (Vegetative incompatibility protein HET-E-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR94_9FLOR)

HSP 1 Score: 65.1 bits (157), Expect = 2.230e-8
Identity = 51/177 (28.81%), Postives = 82/177 (46.33%), Query Frame = 0
Query:   46 GETTDGSRSGIRKYLDTLWCWKIQQPRGEAVESDVRSNSSYSQREWWTVEDED-KYVHNNTCRLLNESGNQEELLWLVHKPQWIIKRLRENGAFAVERDIAIAMRVLEQSQMEQKDE-MKS-SLEAIAEASSMGGQAVR---ENPRHAWLQLYTTLLPHAHKSETLRRFVDEVASDA 216
            GE TD  RS +  Y+     W +    G+  E   R        EWW V  +D  Y   N  R L E+G  +E+  LV +PQWI KR+RE+G     +D+  A+   E+ +    +E MK+  L+ + +A  +    +    E     W QL+  L   A  + ++  +V+ +A+ A
Sbjct:  657 GEMTDWHRSVVDGYVKN---WSL----GDGTEHGCR--------EWWRVNPDDASYFRQNIVRHLGEAGLGQEMATLVSRPQWIEKRVREDGFMLYLQDLNFAINRCEKDESLGTEEGMKTIELKLVKKALRLSYDYIHDISEGDVEVWFQLHARLFDMAAMNRSIESYVNYIATHA 818          
The following BLAST results are available for this feature:
BLAST of Ggra9303.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IH581.820e-1834.04NB-ARC domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3IKX05.140e-1730.54Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A2V3IDG21.080e-1441.67Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
A0A2V3IR942.230e-828.81Vegetative incompatibility protein HET-E-1 n=1 Tax... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 224..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:369093..371522 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9303.t1Ggra9303.t1Gracilaria gracilis GNS1m malemRNAtig00000863_pilon 369093..371522 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9303.t1 ID=Ggra9303.t1|Name=Ggra9303.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=248bp
MLNRVAQLQHSSSDFWIGAKMIQTCLTDCESWKMNEIVNLGDHFEGETTD
GSRSGIRKYLDTLWCWKIQQPRGEAVESDVRSNSSYSQREWWTVEDEDKY
VHNNTCRLLNESGNQEELLWLVHKPQWIIKRLRENGAFAVERDIAIAMRV
LEQSQMEQKDEMKSSLEAIAEASSMGGQAVRENPRHAWLQLYTTLLPHAH
KSETLRRFVDEVASDAESNGASWAEAAQDDVAAATTQLEGIEVDGSG*
back to top