Ggra9311.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9311.t1
Unique Name	Ggra9311.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	290

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000863_pilon	contig	tig00000863_pilon:499115..499984 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	583355.Caka_0059
PFAMs	Big_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl	2\|Bacteria
KEGG ko	ko:K20846
Evalue	1.33e-29
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria
EC	3.2.1.83
Description	xyloglucan:xyloglucosyl transferase activity
COG category	G
CAZy	GH16
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9311	Ggra9311	Gracilaria gracilis GNS1m male	gene	tig00000863_pilon 499115..499984 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9311.t1.start1	Ggra9311.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000863_pilon 499115..499117 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9311.t1.CDS1	Ggra9311.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000863_pilon 499115..499984 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9311.t1.exon1	Ggra9311.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000863_pilon 499115..499984 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9311.t1.stop1	Ggra9311.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000863_pilon 499982..499984 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9311.t1	Ggra9311.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000863_pilon 499115..499984 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000863_pilon:499115..499984+
coding sequence from alignment at tig00000863_pilon:499115..499984+

mRNA sequence

>Ggra9311.t1 ID=Ggra9311.t1|Name=Ggra9311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MTLYKDVPALNYNPSKTRHDTPLPYYLQQEVPRNMKWVKDWKVSDEFDAY
PTENWYYNNKWVRYNPLWQGRNPSFFSEENVYVRDNRLWLQSEERTPTPN
DRRKMGRRLDGNSWKYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFWFI
DDRDTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERS
NPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLYL
QLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMARK*

spliced messenger RNA

>Ggra9311.t1 ID=Ggra9311.t1|Name=Ggra9311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000863_pilon:499115..499984+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTCTACAAAGATGTCCCCGCTCTCAACTACAACCCCTCCAAAAC
CCGCCACGATACTCCTCTCCCCTACTACCTCCAACAAGAGGTGCCGCGTA
ACATGAAGTGGGTCAAGGACTGGAAGGTGTCCGATGAATTTGATGCTTAC
CCCACCGAGAACTGGTACTACAATAACAAATGGGTGCGATATAACCCACT
GTGGCAAGGAAGAAACCCGAGTTTCTTCTCAGAGGAAAACGTGTACGTGC
GTGACAATCGCTTGTGGTTGCAGTCCGAGGAGAGAACACCGACGCCCAAC
GATCGCAGGAAGATGGGACGTCGTCTGGACGGAAACAGTTGGAAATACGC
CACCAGTTTTATTCGAACCGCTGAGAAACGCACCTATGGTTACTATGAGA
TCGCATGCAAGCTCATGGACAGTAACGTCAGCTCCGCATTCTGGTTTATC
GACGACCGCGACACCGAGATTGACGTGTTCGAGTACTCCACCTCCGGTAA
GAACTACGACATCTACGACAAGTCTCGCGTCCCGTTCAAGAACAAGTTCA
ACATGAACACCATTGTGTACTCTGGAGCAAACCGAGAACATGAGCGATCC
AACCCATTGAAGATCAATGTGGGACGCGATTTGAGCAAGGAAATCATCAA
AGTGGGCTTCCTTTGGAAGCCTGATGTGCTGGTGTGGTACCTGAACGATC
GTGAAGTACGTCGACTTCCAAACCACGACTTCCACAAACCGTTGTACTTG
CAGCTGGACTCTGAGGTGTTCCCTAATTGGTTTGGAGAACCAGGAGAGTA
TGGAGCGAAGAAACTACCGAATTCTTGGCAGgtgttctacgttcgaagct
atcagatggcacgaaaatag

protein sequence of Ggra9311.t1

>Ggra9311.t1 ID=Ggra9311.t1|Name=Ggra9311.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MTLYKDVPALNYNPSKTRHDTPLPYYLQQEVPRNMKWVKDWKVSDEFDAY
PTENWYYNNKWVRYNPLWQGRNPSFFSEENVYVRDNRLWLQSEERTPTPN
DRRKMGRRLDGNSWKYATSFIRTAEKRTYGYYEIACKLMDSNVSSAFWFI
DDRDTEIDVFEYSTSGKNYDIYDKSRVPFKNKFNMNTIVYSGANREHERS
NPLKINVGRDLSKEIIKVGFLWKPDVLVWYLNDREVRRLPNHDFHKPLYL
QLDSEVFPNWFGEPGEYGAKKLPNSWQVFYVRSYQMARK*

mRNA from alignment at tig00000863_pilon:499115..499984+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9311.t1 ID=Ggra9311.t1|Name=Ggra9311.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000863_pilon:499115..499984+ (Gracilaria gracilis GNS1m male)
ATGACTCTCTACAAAGATGTCCCCGCTCTCAACTACAACCCCTCCAAAAC
CCGCCACGATACTCCTCTCCCCTACTACCTCCAACAAGAGGTGCCGCGTA
ACATGAAGTGGGTCAAGGACTGGAAGGTGTCCGATGAATTTGATGCTTAC
CCCACCGAGAACTGGTACTACAATAACAAATGGGTGCGATATAACCCACT
GTGGCAAGGAAGAAACCCGAGTTTCTTCTCAGAGGAAAACGTGTACGTGC
GTGACAATCGCTTGTGGTTGCAGTCCGAGGAGAGAACACCGACGCCCAAC
GATCGCAGGAAGATGGGACGTCGTCTGGACGGAAACAGTTGGAAATACGC
CACCAGTTTTATTCGAACCGCTGAGAAACGCACCTATGGTTACTATGAGA
TCGCATGCAAGCTCATGGACAGTAACGTCAGCTCCGCATTCTGGTTTATC
GACGACCGCGACACCGAGATTGACGTGTTCGAGTACTCCACCTCCGGTAA
GAACTACGACATCTACGACAAGTCTCGCGTCCCGTTCAAGAACAAGTTCA
ACATGAACACCATTGTGTACTCTGGAGCAAACCGAGAACATGAGCGATCC
AACCCATTGAAGATCAATGTGGGACGCGATTTGAGCAAGGAAATCATCAA
AGTGGGCTTCCTTTGGAAGCCTGATGTGCTGGTGTGGTACCTGAACGATC
GTGAAGTACGTCGACTTCCAAACCACGACTTCCACAAACCGTTGTACTTG
CAGCTGGACTCTGAGGTGTTCCCTAATTGGTTTGGAGAACCAGGAGAGTA
TGGAGCGAAGAAACTACCGAATTCTTGGCAGgtgttctacgttcgaagct
atcagatggcacgaaaatag

Coding sequence (CDS) from alignment at tig00000863_pilon:499115..499984+

>Ggra9311.t1 ID=Ggra9311.t1|Name=Ggra9311.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000863_pilon:499115..499984+ (Gracilaria gracilis GNS1m male)
ATGACTCTCTACAAAGATGTCCCCGCTCTCAACTACAACCCCTCCAAAAC
CCGCCACGATACTCCTCTCCCCTACTACCTCCAACAAGAGGTGCCGCGTA
ACATGAAGTGGGTCAAGGACTGGAAGGTGTCCGATGAATTTGATGCTTAC
CCCACCGAGAACTGGTACTACAATAACAAATGGGTGCGATATAACCCACT
GTGGCAAGGAAGAAACCCGAGTTTCTTCTCAGAGGAAAACGTGTACGTGC
GTGACAATCGCTTGTGGTTGCAGTCCGAGGAGAGAACACCGACGCCCAAC
GATCGCAGGAAGATGGGACGTCGTCTGGACGGAAACAGTTGGAAATACGC
CACCAGTTTTATTCGAACCGCTGAGAAACGCACCTATGGTTACTATGAGA
TCGCATGCAAGCTCATGGACAGTAACGTCAGCTCCGCATTCTGGTTTATC
GACGACCGCGACACCGAGATTGACGTGTTCGAGTACTCCACCTCCGGTAA
GAACTACGACATCTACGACAAGTCTCGCGTCCCGTTCAAGAACAAGTTCA
ACATGAACACCATTGTGTACTCTGGAGCAAACCGAGAACATGAGCGATCC
AACCCATTGAAGATCAATGTGGGACGCGATTTGAGCAAGGAAATCATCAA
AGTGGGCTTCCTTTGGAAGCCTGATGTGCTGGTGTGGTACCTGAACGATC
GTGAAGTACGTCGACTTCCAAACCACGACTTCCACAAACCGTTGTACTTG
CAGCTGGACTCTGAGGTGTTCCCTAATTGGTTTGGAGAACCAGGAGAGTA
TGGAGCGAAGAAACTACCGAATTCTTGGCAGgtgttctacgttcgaagct
atcagatggcacgaaaatag