Ggra9333.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9333.t1
Unique NameGgra9333.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:948823..949434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9333Ggra9333Gracilaria gracilis GNS1m malegenetig00000863_pilon 948823..949434 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9333.t1.start1Ggra9333.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 948823..948825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9333.t1.CDS1Ggra9333.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 948823..949434 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9333.t1.exon1Ggra9333.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 948823..949434 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9333.t1.stop1Ggra9333.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 949432..949434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9333.t1Ggra9333.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 948823..949434 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9333.t1 ID=Ggra9333.t1|Name=Ggra9333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=204bp
MSASLAFLVLCLLSCSVVCQQRSRAPPRDPFVATKIDILCSKALGCISDC
DQTAFCLDARLSASSRSYILNDQVLFLRAQLVRLTNDSVVGLIHESFALP
LSVFSGSFFSAATFEESFVPDPWLSSLAGSFSELQALDPSLSVLRVGDPY
CVMQKTVYQGYTTGNVGYCGIYSDEDAPLRAATATSRTGSFGFRCNVRRF
GPN*
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spliced messenger RNA

>Ggra9333.t1 ID=Ggra9333.t1|Name=Ggra9333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000863_pilon:948823..949434+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTTCTCTGGCTTTCCTTGTGCTGTGTTTGTTATCGTGTTCCGT
CGTTTGTCAGCAACGATCTCGCGCACCCCCAAGAGATCCATTCGTTGCCA
CCAAGATCGACATTTTGTGTTCGAAGGCTCTTGGATGCATCTCCGATTGC
GACCAGACTGCATTCTGTCTCGATGCGCGTCTGTCTGCATCGTCTCGGTC
ATACATTCTCAACGATCAGGTGCTGTTCTTGAGGGCTCAATTGGTTCGAC
TGACAAACGACTCCGTGGTAGGACTCATCCATGAGTCTTTCGCACTGCCT
CTCTCGGTCTTCAGCGGCTCGTTCTTCAGTGCGGCGACGTTCGAAGAATC
ATTCGTGCCAGATCCGTGGCTGTCTTCGTTGGCCGGCTCCTTTTCAGAGT
TGCAAGCGTTGGACCCCTCGCTTTCGGTGCTCAGAGTGGGAGACCCGTAC
TGCGTGATGCAGAAAACCGTGTACCAGGGGTACACGACTGGAAATGTGGG
CTATTGTGGAATATATTCTGATGAAGATGCGCCGCTGCGCGCCGCAACTG
CCACCTCGAGAACTGGCTCCTTCGGCTTCCGATGCAACGTGCGCCGCTTT
GGGCCGAACTGA
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protein sequence of Ggra9333.t1

>Ggra9333.t1 ID=Ggra9333.t1|Name=Ggra9333.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=204bp
MSASLAFLVLCLLSCSVVCQQRSRAPPRDPFVATKIDILCSKALGCISDC
DQTAFCLDARLSASSRSYILNDQVLFLRAQLVRLTNDSVVGLIHESFALP
LSVFSGSFFSAATFEESFVPDPWLSSLAGSFSELQALDPSLSVLRVGDPY
CVMQKTVYQGYTTGNVGYCGIYSDEDAPLRAATATSRTGSFGFRCNVRRF
GPN*
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mRNA from alignment at tig00000863_pilon:948823..949434+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9333.t1 ID=Ggra9333.t1|Name=Ggra9333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00000863_pilon:948823..949434+ (Gracilaria gracilis GNS1m male)
ATGAGCGCTTCTCTGGCTTTCCTTGTGCTGTGTTTGTTATCGTGTTCCGT
CGTTTGTCAGCAACGATCTCGCGCACCCCCAAGAGATCCATTCGTTGCCA
CCAAGATCGACATTTTGTGTTCGAAGGCTCTTGGATGCATCTCCGATTGC
GACCAGACTGCATTCTGTCTCGATGCGCGTCTGTCTGCATCGTCTCGGTC
ATACATTCTCAACGATCAGGTGCTGTTCTTGAGGGCTCAATTGGTTCGAC
TGACAAACGACTCCGTGGTAGGACTCATCCATGAGTCTTTCGCACTGCCT
CTCTCGGTCTTCAGCGGCTCGTTCTTCAGTGCGGCGACGTTCGAAGAATC
ATTCGTGCCAGATCCGTGGCTGTCTTCGTTGGCCGGCTCCTTTTCAGAGT
TGCAAGCGTTGGACCCCTCGCTTTCGGTGCTCAGAGTGGGAGACCCGTAC
TGCGTGATGCAGAAAACCGTGTACCAGGGGTACACGACTGGAAATGTGGG
CTATTGTGGAATATATTCTGATGAAGATGCGCCGCTGCGCGCCGCAACTG
CCACCTCGAGAACTGGCTCCTTCGGCTTCCGATGCAACGTGCGCCGCTTT
GGGCCGAACTGA
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Coding sequence (CDS) from alignment at tig00000863_pilon:948823..949434+

>Ggra9333.t1 ID=Ggra9333.t1|Name=Ggra9333.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=612bp|location=Sequence derived from alignment at tig00000863_pilon:948823..949434+ (Gracilaria gracilis GNS1m male)
ATGAGCGCTTCTCTGGCTTTCCTTGTGCTGTGTTTGTTATCGTGTTCCGT
CGTTTGTCAGCAACGATCTCGCGCACCCCCAAGAGATCCATTCGTTGCCA
CCAAGATCGACATTTTGTGTTCGAAGGCTCTTGGATGCATCTCCGATTGC
GACCAGACTGCATTCTGTCTCGATGCGCGTCTGTCTGCATCGTCTCGGTC
ATACATTCTCAACGATCAGGTGCTGTTCTTGAGGGCTCAATTGGTTCGAC
TGACAAACGACTCCGTGGTAGGACTCATCCATGAGTCTTTCGCACTGCCT
CTCTCGGTCTTCAGCGGCTCGTTCTTCAGTGCGGCGACGTTCGAAGAATC
ATTCGTGCCAGATCCGTGGCTGTCTTCGTTGGCCGGCTCCTTTTCAGAGT
TGCAAGCGTTGGACCCCTCGCTTTCGGTGCTCAGAGTGGGAGACCCGTAC
TGCGTGATGCAGAAAACCGTGTACCAGGGGTACACGACTGGAAATGTGGG
CTATTGTGGAATATATTCTGATGAAGATGCGCCGCTGCGCGCCGCAACTG
CCACCTCGAGAACTGGCTCCTTCGGCTTCCGATGCAACGTGCGCCGCTTT
GGGCCGAACTGA
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