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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 42345.XP_008794040.1 |
| PFAMs | ArgoL1,ArgoL2,ArgoMid,ArgoN,PAZ,Piwi |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K11593 |
| Evalue | 2.13e-115 |
| EggNOG OGs | KOG1041@1|root,KOG1041@2759|Eukaryota,37MK8@33090|Viridiplantae,3GGM6@35493|Streptophyta,3KPY8@4447|Liliopsida |
| Description | Belongs to the argonaute family |
| COG category | J |
| BRITE | ko00000,ko03019,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9320.t1.stop1 | Ggra9320.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000863_pilon 637490..637492 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9320.t1.start1 | Ggra9320.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000863_pilon 640085..640087 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9320.t1 ID=Ggra9320.t1|Name=Ggra9320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=866bp MSGPSSSKQVVIKPKPMSRPRHGRVGTPIDVEANFVRLAIPTRLKASQYA VQLFRNKTKRGTIVKQEVSATEAISFNRNCFAVLLDRYAHEFGCNLAYNG RSIAYAPTEINRMALGRTYTIRVNKDGWRPDTSDGKEEEIGIVLNHAKYL RYNDLFSGAVEGTSATEFITCLDVVLAPAAAVDHVQVGRSFYNSHDCVAL GRWNITKSAWKGFYQSVRLSELGLVLNMDQSCTAFWNKGSMPLAQLLRDA NNNRDLRCGNPRSLYEVAQKIKGLKVKAVHTGIVYRVHGFSNRGADRTCF DCNGQMISITQYFADTYGIALQNGGAPLVKTNPKRDTFVPIECLSIVPNQ RVAGLLSQDETQTMVRSAVTKPFVRRKNAVTRIQELKYHEHPICRDFGIE VRPHLIHLKARVLSPPSIKYQQGVVRPLNGQWRAKNGVMNPARLLSWAVC NTSRLSQNEVEQFIRDLISAMNRAGLKMYMKNPKVYLCDEQHIEQKMREI ALEFSRDKTLFMKNPCLQLLIVIKERQDSKVYNAIKREGDLNLGIATQVC LSKHCGSRSRGRDMYCDNVVLKINAKLGGHNGGVASYGESQGNRIPDVNF LNIPHIILGADVSHPSPGAQGLSVAALVGSRDREGLQFASAIRSQEGGQE TITEIGEMFKEVYAVWYHQFQRKFHAYSIIMFRDGVSEGQFEDVMQREVE AIRKACKEISDKMRPSITYMIVTKRHHTRFFPASKGAGDRSGNVPPGTVV DTGITSKSYYDFYLNSHAGIQGTCKPSKYTVLIDENNIPPDALYGYIYRL SHSFSRCNRPVSMVHSAYYAHLLAFRGRAYIEDKTSDTASGSSGGSSIPA IPNAHGLLKGHLYFI* back to topspliced messenger RNA >Ggra9320.t1 ID=Ggra9320.t1|Name=Ggra9320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2598bp|location=Sequence derived from alignment at tig00000863_pilon:637490..640087- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGTGGCCCCAGCTCCTCCAAGCAAGTCGTTATCAAACCTAAGCCCAT GAGCAGACCACGCCATGGTCGGGTAGGTACGCCCATCGATGTCGAAGCCA ACTTCGTCCGTTTAGCTATCCCAACTCGTCTCAAAGCTTCTCAATACGCG GTACAGCTCTTTCGAAACAAGACCAAGAGAGGAACAATCGTGAAACAAGA AGTGAGTGCTACCGAGGCCATCTCATTCAATCGTAACTGCTTTGCCGTGC TCCTGGACCGCTATGCCCATGAGTTCGGATGCAACCTTGCGTACAACGGT CGTTCTATCGCTTATGCACCTACCGAGATCAATCGTATGGCCTTGGGACG AACGTACACGATCAGGGTGAACAAAGACGGCTGGAGACCAGATACAAGCG ACGGTAAAGAAGAAGAAATTGGGATCGTTCTCAACCATGCCAAGTATCTG CGCTACAACGACTTATTCTCCGGTGCTGTGGAAGGCACTTCGGCCACAGA GTTCATTACCTGTTTGGATGTGGTTTTAGCACCGGCTGCTGCAGTGGACC ATGTGCAGGTTGGTCGATCCTTTTATAACTCACATGACTGCGTGGCTCTT GGTCGCTGGAATATCACTAAAAGTGCATGGAAAGGCTTCTATCAAAGTGT GCGTTTGTCGGAGCTGGGTTTGGTACTCAATATGGACCAATCTTGCACTG CTTTCTGGAATAAGGGAAGCATGCCACTCGCACAACTTTTGCGAGATGCT AATAACAATCGCGACCTGAGGTGTGGCAATCCAAGGTCGCTTTATGAAGT GGCACAGAAGATCAAGGGTCTCAAGGTGAAAGCAGTTCACACTGGAATTG TGTATCGAGTGCACGGTTTCTCAAATCGAGGGGCTGATCGAACTTGTTTC GACTGCAATGGTCAAATGATTTCGATCACCCAGTACTTTGCAGACACATA TGGTATCGCGCTTCAGAATGGTGGCGCCCCATTGGTCAAAACGAATCCGA AGAGGGACACGTTCGTACCAATCGAGTGCCTGTCTATCGTCCCAAACCAG AGGGTTGCTGGCCTTTTGTCGCAGGATGAAACCCAAACGATGGTCAGAAG TGCAGTCACTAAACCATTCGTGAGAAGAAAGAACGCCGTCACAAGAATTC AAGAACTCAAGTACCATGAGCATCCGATTTGCAGAGATTTCGGCATCGAA GTTCGCCCCCATTTGATTCATTTGAAGGCTCGCGTGTTGTCCCCTCCGTC GATTAAGTATCAGCAAGGCGTTGTTCGCCCGCTTAATGGCCAGTGGAGGG CGAAAAATGGTGTAATGAATCCTGCCAGACTTTTGTCTTGGGCTGTTTGC AATACATCGCGGCTCAGCCAAAATGAGGTTGAGCAGTTTATCAGAGATCT CATTTCAGCGATGAACAGAGCCGGTTTGAAGATGTACATGAAGAATCCAA AGGTTTACCTCTGTGATGAGCAACATATAGAACAAAAAATGCGAGAAATT GCCCTTGAATTCAGCAGAGACAAAACGCTCTTCATGAAGAATCCGTGTCT TCAGCTCCTCATCGTGATTAAGGAAAGGCAGGACTCCAAGGTTTACAACG CGATTAAGCGAGAGGGAGACCTTAATCTAGGCATCGCGACTCAGGTCTGC TTATCGAAACACTGTGGTTCAAGGTCAAGAGGACGAGATATGTACTGCGA CAATGTTGTGCTTAAGATAAATGCGAAACTTGGTGGCCATAACGGCGGTG TGGCCTCCTATGGAGAAAGTCAGGGCAATCGAATCCCTGATGTGAACTTC CTAAACATCCCCCATATCATTCTTGGTGCTGATGTTTCTCATCCATCACC GGGGGCCCAAGGACTGAGTGTCGCGGCCTTGGTTGGTTCCCGAGACCGTG AAGGGCTGCAGTTTGCTTCTGCGATCCGTTCACAGGAGGGCGGACAGGAA ACGATAACGGAGATTGGAGAAATGTTCAAGGAAGTGTATGCTGTGTGGTA CCATCAGTTTCAGAGAAAGTTCCATGCGTACAGTATCATTATGTTCCGAG ATGGTGTGTCAGAAGGCCAGTTTGAAGACGTGATGCAACGTGAAGTTGAA GCGATCCGCAAAGCTTGTAAGGAAATTAGTGACAAGATGCGTCCGTCAAT CACGTATATGATTGTAACCAAGCGCCACCACACAAGGTTCTTCCCTGCTT CGAAGGGAGCTGGGGACAGGTCTGGAAACGTTCCTCCCGGAACTGTTGTG GATACAGGCATCACAAGTAAGTCGTATTACGACTTTTACTTGAATTCACA TGCTGGAATTCAAGGCACTTGCAAGCCGTCAAAGTACACTGTACTTATTG ATGAGAACAACATACCGCCAGATGCGTTGTATGGATACATTTACCGTCTG TCCCACTCGTTTAGTAGATGCAATCGACCTGTTTCTATGGTGCACAGCGC GTATTACGCGCATCTTTTGGCGTTCAGAGGGCGAGCCTACATTGAAGACA AAACATCCGATACTGCTTCCGGGAGCTCTGGCGGAAGTAGTATTCCAGCG ATACCAAACGCTCACGGCTTACTTAAAGGTCATCTCTACTTTATATAG back to topprotein sequence of Ggra9320.t1 >Ggra9320.t1 ID=Ggra9320.t1|Name=Ggra9320.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=866bp
MSGPSSSKQVVIKPKPMSRPRHGRVGTPIDVEANFVRLAIPTRLKASQYA VQLFRNKTKRGTIVKQEVSATEAISFNRNCFAVLLDRYAHEFGCNLAYNG RSIAYAPTEINRMALGRTYTIRVNKDGWRPDTSDGKEEEIGIVLNHAKYL RYNDLFSGAVEGTSATEFITCLDVVLAPAAAVDHVQVGRSFYNSHDCVAL GRWNITKSAWKGFYQSVRLSELGLVLNMDQSCTAFWNKGSMPLAQLLRDA NNNRDLRCGNPRSLYEVAQKIKGLKVKAVHTGIVYRVHGFSNRGADRTCF DCNGQMISITQYFADTYGIALQNGGAPLVKTNPKRDTFVPIECLSIVPNQ RVAGLLSQDETQTMVRSAVTKPFVRRKNAVTRIQELKYHEHPICRDFGIE VRPHLIHLKARVLSPPSIKYQQGVVRPLNGQWRAKNGVMNPARLLSWAVC NTSRLSQNEVEQFIRDLISAMNRAGLKMYMKNPKVYLCDEQHIEQKMREI ALEFSRDKTLFMKNPCLQLLIVIKERQDSKVYNAIKREGDLNLGIATQVC LSKHCGSRSRGRDMYCDNVVLKINAKLGGHNGGVASYGESQGNRIPDVNF LNIPHIILGADVSHPSPGAQGLSVAALVGSRDREGLQFASAIRSQEGGQE TITEIGEMFKEVYAVWYHQFQRKFHAYSIIMFRDGVSEGQFEDVMQREVE AIRKACKEISDKMRPSITYMIVTKRHHTRFFPASKGAGDRSGNVPPGTVV DTGITSKSYYDFYLNSHAGIQGTCKPSKYTVLIDENNIPPDALYGYIYRL SHSFSRCNRPVSMVHSAYYAHLLAFRGRAYIEDKTSDTASGSSGGSSIPA IPNAHGLLKGHLYFI* back to topmRNA from alignment at tig00000863_pilon:637490..640087- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9320.t1 ID=Ggra9320.t1|Name=Ggra9320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2598bp|location=Sequence derived from alignment at tig00000863_pilon:637490..640087- (Gracilaria gracilis GNS1m male) ATGAGTGGCCCCAGCTCCTCCAAGCAAGTCGTTATCAAACCTAAGCCCAT
GAGCAGACCACGCCATGGTCGGGTAGGTACGCCCATCGATGTCGAAGCCA
ACTTCGTCCGTTTAGCTATCCCAACTCGTCTCAAAGCTTCTCAATACGCG
GTACAGCTCTTTCGAAACAAGACCAAGAGAGGAACAATCGTGAAACAAGA
AGTGAGTGCTACCGAGGCCATCTCATTCAATCGTAACTGCTTTGCCGTGC
TCCTGGACCGCTATGCCCATGAGTTCGGATGCAACCTTGCGTACAACGGT
CGTTCTATCGCTTATGCACCTACCGAGATCAATCGTATGGCCTTGGGACG
AACGTACACGATCAGGGTGAACAAAGACGGCTGGAGACCAGATACAAGCG
ACGGTAAAGAAGAAGAAATTGGGATCGTTCTCAACCATGCCAAGTATCTG
CGCTACAACGACTTATTCTCCGGTGCTGTGGAAGGCACTTCGGCCACAGA
GTTCATTACCTGTTTGGATGTGGTTTTAGCACCGGCTGCTGCAGTGGACC
ATGTGCAGGTTGGTCGATCCTTTTATAACTCACATGACTGCGTGGCTCTT
GGTCGCTGGAATATCACTAAAAGTGCATGGAAAGGCTTCTATCAAAGTGT
GCGTTTGTCGGAGCTGGGTTTGGTACTCAATATGGACCAATCTTGCACTG
CTTTCTGGAATAAGGGAAGCATGCCACTCGCACAACTTTTGCGAGATGCT
AATAACAATCGCGACCTGAGGTGTGGCAATCCAAGGTCGCTTTATGAAGT
GGCACAGAAGATCAAGGGTCTCAAGGTGAAAGCAGTTCACACTGGAATTG
TGTATCGAGTGCACGGTTTCTCAAATCGAGGGGCTGATCGAACTTGTTTC
GACTGCAATGGTCAAATGATTTCGATCACCCAGTACTTTGCAGACACATA
TGGTATCGCGCTTCAGAATGGTGGCGCCCCATTGGTCAAAACGAATCCGA
AGAGGGACACGTTCGTACCAATCGAGTGCCTGTCTATCGTCCCAAACCAG
AGGGTTGCTGGCCTTTTGTCGCAGGATGAAACCCAAACGATGGTCAGAAG
TGCAGTCACTAAACCATTCGTGAGAAGAAAGAACGCCGTCACAAGAATTC
AAGAACTCAAGTACCATGAGCATCCGATTTGCAGAGATTTCGGCATCGAA
GTTCGCCCCCATTTGATTCATTTGAAGGCTCGCGTGTTGTCCCCTCCGTC
GATTAAGTATCAGCAAGGCGTTGTTCGCCCGCTTAATGGCCAGTGGAGGG
CGAAAAATGGTGTAATGAATCCTGCCAGACTTTTGTCTTGGGCTGTTTGC
AATACATCGCGGCTCAGCCAAAATGAGGTTGAGCAGTTTATCAGAGATCT
CATTTCAGCGATGAACAGAGCCGGTTTGAAGATGTACATGAAGAATCCAA
AGGTTTACCTCTGTGATGAGCAACATATAGAACAAAAAATGCGAGAAATT
GCCCTTGAATTCAGCAGAGACAAAACGCTCTTCATGAAGAATCCGTGTCT
TCAGCTCCTCATCGTGATTAAGGAAAGGCAGGACTCCAAGGTTTACAACG
CGATTAAGCGAGAGGGAGACCTTAATCTAGGCATCGCGACTCAGGTCTGC
TTATCGAAACACTGTGGTTCAAGGTCAAGAGGACGAGATATGTACTGCGA
CAATGTTGTGCTTAAGATAAATGCGAAACTTGGTGGCCATAACGGCGGTG
TGGCCTCCTATGGAGAAAGTCAGGGCAATCGAATCCCTGATGTGAACTTC
CTAAACATCCCCCATATCATTCTTGGTGCTGATGTTTCTCATCCATCACC
GGGGGCCCAAGGACTGAGTGTCGCGGCCTTGGTTGGTTCCCGAGACCGTG
AAGGGCTGCAGTTTGCTTCTGCGATCCGTTCACAGGAGGGCGGACAGGAA
ACGATAACGGAGATTGGAGAAATGTTCAAGGAAGTGTATGCTGTGTGGTA
CCATCAGTTTCAGAGAAAGTTCCATGCGTACAGTATCATTATGTTCCGAG
ATGGTGTGTCAGAAGGCCAGTTTGAAGACGTGATGCAACGTGAAGTTGAA
GCGATCCGCAAAGCTTGTAAGGAAATTAGTGACAAGATGCGTCCGTCAAT
CACGTATATGATTGTAACCAAGCGCCACCACACAAGGTTCTTCCCTGCTT
CGAAGGGAGCTGGGGACAGGTCTGGAAACGTTCCTCCCGGAACTGTTGTG
GATACAGGCATCACAAGTAAGTCGTATTACGACTTTTACTTGAATTCACA
TGCTGGAATTCAAGGCACTTGCAAGCCGTCAAAGTACACTGTACTTATTG
ATGAGAACAACATACCGCCAGATGCGTTGTATGGATACATTTACCGTCTG
TCCCACTCGTTTAGTAGATGCAATCGACCTGTTTCTATGGTGCACAGCGC
GTATTACGCGCATCTTTTGGCGTTCAGAGGGCGAGCCTACATTGAAGACA
AAACATCCGATACTGCTTCCGGGAGCTCTGGCGGAAGTAGTATTCCAGCG
ATACCAAACGCTCACGGCTTACTTAAAGGTCATCTCTACTTTATATAG back to topCoding sequence (CDS) from alignment at tig00000863_pilon:637490..640087- >Ggra9320.t1 ID=Ggra9320.t1|Name=Ggra9320.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2598bp|location=Sequence derived from alignment at tig00000863_pilon:637490..640087- (Gracilaria gracilis GNS1m male) ATGAGTGGCCCCAGCTCCTCCAAGCAAGTCGTTATCAAACCTAAGCCCAT GAGCAGACCACGCCATGGTCGGGTAGGTACGCCCATCGATGTCGAAGCCA ACTTCGTCCGTTTAGCTATCCCAACTCGTCTCAAAGCTTCTCAATACGCG GTACAGCTCTTTCGAAACAAGACCAAGAGAGGAACAATCGTGAAACAAGA AGTGAGTGCTACCGAGGCCATCTCATTCAATCGTAACTGCTTTGCCGTGC TCCTGGACCGCTATGCCCATGAGTTCGGATGCAACCTTGCGTACAACGGT CGTTCTATCGCTTATGCACCTACCGAGATCAATCGTATGGCCTTGGGACG AACGTACACGATCAGGGTGAACAAAGACGGCTGGAGACCAGATACAAGCG ACGGTAAAGAAGAAGAAATTGGGATCGTTCTCAACCATGCCAAGTATCTG CGCTACAACGACTTATTCTCCGGTGCTGTGGAAGGCACTTCGGCCACAGA GTTCATTACCTGTTTGGATGTGGTTTTAGCACCGGCTGCTGCAGTGGACC ATGTGCAGGTTGGTCGATCCTTTTATAACTCACATGACTGCGTGGCTCTT GGTCGCTGGAATATCACTAAAAGTGCATGGAAAGGCTTCTATCAAAGTGT GCGTTTGTCGGAGCTGGGTTTGGTACTCAATATGGACCAATCTTGCACTG CTTTCTGGAATAAGGGAAGCATGCCACTCGCACAACTTTTGCGAGATGCT AATAACAATCGCGACCTGAGGTGTGGCAATCCAAGGTCGCTTTATGAAGT GGCACAGAAGATCAAGGGTCTCAAGGTGAAAGCAGTTCACACTGGAATTG TGTATCGAGTGCACGGTTTCTCAAATCGAGGGGCTGATCGAACTTGTTTC GACTGCAATGGTCAAATGATTTCGATCACCCAGTACTTTGCAGACACATA TGGTATCGCGCTTCAGAATGGTGGCGCCCCATTGGTCAAAACGAATCCGA AGAGGGACACGTTCGTACCAATCGAGTGCCTGTCTATCGTCCCAAACCAG AGGGTTGCTGGCCTTTTGTCGCAGGATGAAACCCAAACGATGGTCAGAAG TGCAGTCACTAAACCATTCGTGAGAAGAAAGAACGCCGTCACAAGAATTC AAGAACTCAAGTACCATGAGCATCCGATTTGCAGAGATTTCGGCATCGAA GTTCGCCCCCATTTGATTCATTTGAAGGCTCGCGTGTTGTCCCCTCCGTC GATTAAGTATCAGCAAGGCGTTGTTCGCCCGCTTAATGGCCAGTGGAGGG CGAAAAATGGTGTAATGAATCCTGCCAGACTTTTGTCTTGGGCTGTTTGC AATACATCGCGGCTCAGCCAAAATGAGGTTGAGCAGTTTATCAGAGATCT CATTTCAGCGATGAACAGAGCCGGTTTGAAGATGTACATGAAGAATCCAA AGGTTTACCTCTGTGATGAGCAACATATAGAACAAAAAATGCGAGAAATT GCCCTTGAATTCAGCAGAGACAAAACGCTCTTCATGAAGAATCCGTGTCT TCAGCTCCTCATCGTGATTAAGGAAAGGCAGGACTCCAAGGTTTACAACG CGATTAAGCGAGAGGGAGACCTTAATCTAGGCATCGCGACTCAGGTCTGC TTATCGAAACACTGTGGTTCAAGGTCAAGAGGACGAGATATGTACTGCGA CAATGTTGTGCTTAAGATAAATGCGAAACTTGGTGGCCATAACGGCGGTG TGGCCTCCTATGGAGAAAGTCAGGGCAATCGAATCCCTGATGTGAACTTC CTAAACATCCCCCATATCATTCTTGGTGCTGATGTTTCTCATCCATCACC GGGGGCCCAAGGACTGAGTGTCGCGGCCTTGGTTGGTTCCCGAGACCGTG AAGGGCTGCAGTTTGCTTCTGCGATCCGTTCACAGGAGGGCGGACAGGAA ACGATAACGGAGATTGGAGAAATGTTCAAGGAAGTGTATGCTGTGTGGTA CCATCAGTTTCAGAGAAAGTTCCATGCGTACAGTATCATTATGTTCCGAG ATGGTGTGTCAGAAGGCCAGTTTGAAGACGTGATGCAACGTGAAGTTGAA GCGATCCGCAAAGCTTGTAAGGAAATTAGTGACAAGATGCGTCCGTCAAT CACGTATATGATTGTAACCAAGCGCCACCACACAAGGTTCTTCCCTGCTT CGAAGGGAGCTGGGGACAGGTCTGGAAACGTTCCTCCCGGAACTGTTGTG GATACAGGCATCACAAGTAAGTCGTATTACGACTTTTACTTGAATTCACA TGCTGGAATTCAAGGCACTTGCAAGCCGTCAAAGTACACTGTACTTATTG ATGAGAACAACATACCGCCAGATGCGTTGTATGGATACATTTACCGTCTG TCCCACTCGTTTAGTAGATGCAATCGACCTGTTTCTATGGTGCACAGCGC GTATTACGCGCATCTTTTGGCGTTCAGAGGGCGAGCCTACATTGAAGACA AAACATCCGATACTGCTTCCGGGAGCTCTGGCGGAAGTAGTATTCCAGCG ATACCAAACGCTCACGGCTTACTTAAAGGTCATCTCTACTTTATATAG back to top
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