Ggra9331.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9331.t1
Unique NameGgra9331.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length769
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:917505..920498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9331Ggra9331Gracilaria gracilis GNS1m malegenetig00000863_pilon 917505..920498 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9331.t1.start1Ggra9331.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 917505..917507 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9331.t1.CDS1Ggra9331.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 917505..917622 +
Ggra9331.t1.CDS2Ggra9331.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 917968..918817 +
Ggra9331.t1.CDS3Ggra9331.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000863_pilon 918886..919153 +
Ggra9331.t1.CDS4Ggra9331.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000863_pilon 919241..919406 +
Ggra9331.t1.CDS5Ggra9331.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000863_pilon 919502..920288 +
Ggra9331.t1.CDS6Ggra9331.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000863_pilon 920381..920498 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9331.t1.exon1Ggra9331.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 917505..917622 +
Ggra9331.t1.exon2Ggra9331.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 917968..918817 +
Ggra9331.t1.exon3Ggra9331.t1.exon3Gracilaria gracilis GNS1m maleexontig00000863_pilon 918886..919153 +
Ggra9331.t1.exon4Ggra9331.t1.exon4Gracilaria gracilis GNS1m maleexontig00000863_pilon 919241..919406 +
Ggra9331.t1.exon5Ggra9331.t1.exon5Gracilaria gracilis GNS1m maleexontig00000863_pilon 919502..920288 +
Ggra9331.t1.exon6Ggra9331.t1.exon6Gracilaria gracilis GNS1m maleexontig00000863_pilon 920381..920498 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9331.t1.intron1Ggra9331.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 917623..917967 +
Ggra9331.t1.intron2Ggra9331.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000863_pilon 918818..918885 +
Ggra9331.t1.intron3Ggra9331.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000863_pilon 919154..919240 +
Ggra9331.t1.intron4Ggra9331.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000863_pilon 919407..919501 +
Ggra9331.t1.intron5Ggra9331.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000863_pilon 920289..920380 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9331.t1.stop1Ggra9331.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 920496..920498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9331.t1Ggra9331.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 917505..920498 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9331.t1 ID=Ggra9331.t1|Name=Ggra9331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=769bp
MPATEAVPTTTRLPPTSLINPHRGDGTAPAVAGPVPIVGVAVSHGDKKVS
GSKARKERKNYDSDSSASSLSSRRSTGSDSSDSSVEAARHERSSRSKRSS
ATQDVIRARSKGRKHSGLKELKPINLLYKKLLSYRYDRLEDSSLDRTPRG
TGKVKDCIKRMQLSLRNQLFTGDDPILVFDFLSRFVAEANILGMNEGQAF
VALPYFLRGLEEDQKNSVRGSSRASEGGVPCWPEAVQYLLRSYATGTAIQ
SAILALRDTKQRPGETETDYSVRLNKTFHRCSNVHSAQERCTMFVDGLDP
AIRTLVARRREENRKTTYLELVHVDVGTGNPSASMLADEHSQKKYDQVHF
ARSDVLSIPTTELSSTTDASFQTAPDNTLLYADSNRVRQPRLSYENGGTR
ASRPGWQASRPACVLTMREWAQVIANYESLSPDEKASVPMASYIRAKMDI
PRTIAAPVAQNMVTSHPRGICSENLIVGVSSLGEAPSELRLKAPEASPPR
SQVRILSRKQAVEDVNSEHLGVLRRPWIRVRNNRFPDRVMVMAKLNYKVY
ADLGLSPQFTVRYLTVLDTGAGLNFIAETALPPALRSHTRRGDIPEVADA
NNNPFSTVGYIELVIHLGSCVVKLDFVVCRSLAAPVILGCDFCDRFVDAI
RLRQRRVEMEDGSSVPIVRRPVRHASKKHVPLPAAQEAPPSSRESTKLRV
ASETRVPPESQVWVQVNSRQHGLRIVQPLPQNNPVSGEKPIDWLGHAASN
CVGTDEDDCCRCARNRSL*
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spliced messenger RNA

>Ggra9331.t1 ID=Ggra9331.t1|Name=Ggra9331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2307bp|location=Sequence derived from alignment at tig00000863_pilon:917505..920498+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgccggctactgaagctgtgccgacgaccactcgacttccgcccacgtc
gttgatcaaccctcatcgaggtgatggaacggctcctgccgttgctggtc
cagtcccaatcgtaggagttgctgtttcacacggtgacaagaaggtcagt
ggatccaaagcacgcaaagagcggaagaactacgactctgattcatcagc
atcttctctttcttctcgccggtcaaccgggtctgactcgtccgactcgt
cggtagaagcagcccgtcatgagcgttcgtcacgctcaaagcggtcatca
gccacccaagatgtgatacgcgcccgctcgaagggaaggaagcactccgg
actaaaggagttgaagcctatcaatctgctgtacaagaagctgttgtcat
accggtatgaccgtttggaggactcctcattggatagaactccccgtggg
acgggaaaggttaaagactgtatcaaacggatgcagctgtcgctccgtaa
tcaactgtttacaggcgatgatcccatcttggtgtttgattttctatcac
gctttgtagcggaagccaacatcctggggatgaatgaaggacaggcgttt
gtcgcgctgccctattttctacgcggacttgaggaagatcagaaaaactc
tgtaagaggttcatcgcgcgcctctgaaggaggggttccttgctggcctg
aagcagttcagtatctactgaggtcctatgccactggtaccgccatccag
tcggctatcctcgctctgagggacaccaaacaacgccctggcgaaacgga
aaccgactactcggtgcgtctgaataagaccttccaccgttgtagcaatg
ttcattccgctcaagagcgttgtaccatgttcgttgatggactagacccg
gctatacggaccctagtggcccgtcgccgtgaagagaaccgtaagactac
gtacttggaactggtgcacgttgatgttggaaccggaaacccgtcggcgt
caatgctggctgatgaacactcccaaaaaaagtatgatcaggtgcacttt
gcccgtagcgacgtgctttcaatcccgacaacggagctttcctcaaccac
ggatgcctcgtttcaaacggctccggacaatacactgctatacgcagatt
cgaaccgagttcgacagcctcgactgtcatatgagaacggtggaacccgg
gcttcacggcctggctggcaagcttcccgcccagcgtgcgttttaaccat
gcgtgagtgggcacaagtcattgccaactacgaatccctctcacctgatg
agaaggcttccgttccgatggcatcgtacatccgcgcgaagatggatatt
ccacgcacaattgcggctccggttgcccagaacatggtgacctctcaccc
ccgcggaatctgctcagaaaacctaattgtgggagtctcctctcttggag
aggcgccctcagagttgaggctgaaggcgcccgaggcgtccccgcctcgc
tcccaggtccgaatcctctcgaggaaacaggccgtcgaagacgtgaactc
agaacaccttggtgttcttcgtcgaccgtggatacgggtaagaaataacc
ggttcccggatagagttatggtgatggccaaactcaattacaaggtctat
gccgaccttggcctttcaccccagtttacggtgcgttatctcactgtatt
agatacaggcgcaggtctgaacttcattgctgagacagcattgccacccg
ccttgcggtcacacactcgccgtggcgacattcctgaagtcgctgacgcg
aataacaacccgttttcaacggtaggatacatcgagttggtaatccactt
gggctcatgcgtggtgaagctcgactttgtcgtttgtcggtccctggccg
ccccagtcattttgggttgtgacttttgcgaccgctttgtcgatgccatt
aggctccgccagaggcgtgttgaaatggaagatggttcgtccgtgccgat
tgttcgtcgtcctgtgaggcatgcctccaagaagcatgtacctctacctg
cggcacaggaagcaccaccgagttctcgggaatctactaagcttcgtgtt
gcctccgagacacgcgtgcctccagagtctcaagtctgggtacaggtgaa
ctcccgtcaacacggcttacgaatcgtccagccattgccgcaaaacaacc
cagtatctggtgaaaaaccaattgattggctcggtcatgccgcatccaac
tgcgttggtaccgacgaagatgactgctgccgatgtgctcggaatcgttc
actataa
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protein sequence of Ggra9331.t1

>Ggra9331.t1 ID=Ggra9331.t1|Name=Ggra9331.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=769bp
MPATEAVPTTTRLPPTSLINPHRGDGTAPAVAGPVPIVGVAVSHGDKKVS
GSKARKERKNYDSDSSASSLSSRRSTGSDSSDSSVEAARHERSSRSKRSS
ATQDVIRARSKGRKHSGLKELKPINLLYKKLLSYRYDRLEDSSLDRTPRG
TGKVKDCIKRMQLSLRNQLFTGDDPILVFDFLSRFVAEANILGMNEGQAF
VALPYFLRGLEEDQKNSVRGSSRASEGGVPCWPEAVQYLLRSYATGTAIQ
SAILALRDTKQRPGETETDYSVRLNKTFHRCSNVHSAQERCTMFVDGLDP
AIRTLVARRREENRKTTYLELVHVDVGTGNPSASMLADEHSQKKYDQVHF
ARSDVLSIPTTELSSTTDASFQTAPDNTLLYADSNRVRQPRLSYENGGTR
ASRPGWQASRPACVLTMREWAQVIANYESLSPDEKASVPMASYIRAKMDI
PRTIAAPVAQNMVTSHPRGICSENLIVGVSSLGEAPSELRLKAPEASPPR
SQVRILSRKQAVEDVNSEHLGVLRRPWIRVRNNRFPDRVMVMAKLNYKVY
ADLGLSPQFTVRYLTVLDTGAGLNFIAETALPPALRSHTRRGDIPEVADA
NNNPFSTVGYIELVIHLGSCVVKLDFVVCRSLAAPVILGCDFCDRFVDAI
RLRQRRVEMEDGSSVPIVRRPVRHASKKHVPLPAAQEAPPSSRESTKLRV
ASETRVPPESQVWVQVNSRQHGLRIVQPLPQNNPVSGEKPIDWLGHAASN
CVGTDEDDCCRCARNRSL*
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mRNA from alignment at tig00000863_pilon:917505..920498+

Legend: start_codonpolypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9331.t1 ID=Ggra9331.t1|Name=Ggra9331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2994bp|location=Sequence derived from alignment at tig00000863_pilon:917505..920498+ (Gracilaria gracilis GNS1m male)
atgccggctactgaagctgtgccgacgaccactcgacttccgcccacgtc
gttgatcaaccctcatcgaggtgatggaacggctcctgccgttgctggtc
cagtcccaatcgtaggaggtacggtcccttccgtagctcccattccggag
gcacctctgagggctactgtcaatgacaccccccacttaactgtggaaga
gcagctccgctctacacgggctgcccatgctacccttgctaaggagttgt
cactactttgaaagaaagtggatgacactgctttgtaggacttttctgag
gatctccgcgtattgcgtggtgatgtcaactccctcttggaagctttcgg
aggacccgttaatttcgtggaggacgtggctgagaagtttactcgcctcc
gcgcccgtctagaaacggtggaataaaccgtcctggttggagccaatcgc
acggctgagccagttgctgtttcacacggtgacaagaaggtcagtggatc
caaagcacgcaaagagcggaagaactacgactctgattcatcagcatctt
ctctttcttctcgccggtcaaccgggtctgactcgtccgactcgtcggta
gaagcagcccgtcatgagcgttcgtcacgctcaaagcggtcatcagccac
ccaagatgtgatacgcgcccgctcgaagggaaggaagcactccggactaa
aggagttgaagcctatcaatctgctgtacaagaagctgttgtcataccgg
tatgaccgtttggaggactcctcattggatagaactccccgtgggacggg
aaaggttaaagactgtatcaaacggatgcagctgtcgctccgtaatcaac
tgtttacaggcgatgatcccatcttggtgtttgattttctatcacgcttt
gtagcggaagccaacatcctggggatgaatgaaggacaggcgtttgtcgc
gctgccctattttctacgcggacttgaggaagatcagaaaaactctgtaa
gaggttcatcgcgcgcctctgaaggaggggttccttgctggcctgaagca
gttcagtatctactgaggtcctatgccactggtaccgccatccagtcggc
tatcctcgctctgagggacaccaaacaacgccctggcgaaacggaaaccg
actactcggtgcgtctgaataagaccttccaccgttgtagcaatgttcat
tccgctcaagagcgttgtaccatgttcgttgatggactagacccggctat
acggaccctagtggcccgtcgccgtgaagagaaccgtaagactacgtact
tggaactggtgcagtatgcacgcgccgaaggcgatgcgctacgcgcacga
gtctcgggtacccggttgaagtccgctaaagcgttgatgttggaaccgga
aacccgtcggcgtcaatgctggctgatgaacactcccaaaaaaagtatga
tcaggtgcactttgcccgtagcgacgtgctttcaatcccgacaacggagc
tttcctcaaccacggatgcctcgtttcaaacggctccggacaatacactg
ctatacgcagattcgaaccgagttcgacagcctcgactgtcatatgagaa
cggtggaacccgggcttcacggcctggctggcaagcttcccgcccagcgg
tgcgattctcgaatactcggaacgtcaacgccattgtttgattgatctgt
cacctctgctatacgcgagggcatacttctccgcagtgcgttttaaccat
gcgtgagtgggcacaagtcattgccaactacgaatccctctcacctgatg
agaaggcttccgttccgatggcatcgtacatccgcgcgaagatggatatt
ccacgcacaattgcggctccggttgcccagaacatggtgacctctcaccc
ccgtacccctctcgagagaaattcaaccgctactgcggacgcttctgcca
ctggtgtccaggcatcaatggttcagaacactgagcacacgcctcaggcg
gaatctgctcagaaaacctaattgtgggagtctcctctcttggagaggcg
ccctcagagttgaggctgaaggcgcccgaggcgtccccgcctcgctccca
ggtccgaatcctctcgaggaaacaggccgtcgaagacgtgaactcagaac
accttggtgttcttcgtcgaccgtggatacgggtaagaaataaccggttc
ccggatagagttatggtgatggccaaactcaattacaaggtctatgccga
ccttggcctttcaccccagtttacggtgcgttatctcactgtattagata
caggcgcaggtctgaacttcattgctgagacagcattgccacccgccttg
cggtcacacactcgccgtggcgacattcctgaagtcgctgacgcgaataa
caacccgttttcaacggtaggatacatcgagttggtaatccacttgggct
catgcgtggtgaagctcgactttgtcgtttgtcggtccctggccgcccca
gtcattttgggttgtgacttttgcgaccgctttgtcgatgccattaggct
ccgccagaggcgtgttgaaatggaagatggttcgtccgtgccgattgttc
gtcgtcctgtgaggcatgcctccaagaagcatgtacctctacctgcggca
caggaagcaccaccgagttctcgggaatctactaagcttcgtgttgcctc
cgagacacgcgtgcctccagagtctcaagtctgggtacaggtgaactccc
gtcaacacggcttacgaatcgtccagccattgccgtcattgtatgataaa
tactttctcgccattgctaatggagtggtccaggtggaaccggatcatcc
gttttacgtgttgatagccaatctaggcaaaacaacccagtatctggtga
aaaaccaattgattggctcggtcatgccgcatccaactgcgttggtaccg
acgaagatgactgctgccgatgtgctcggaatcgttcactataa
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Coding sequence (CDS) from alignment at tig00000863_pilon:917505..920498+

>Ggra9331.t1 ID=Ggra9331.t1|Name=Ggra9331.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2307bp|location=Sequence derived from alignment at tig00000863_pilon:917505..920498+ (Gracilaria gracilis GNS1m male)
atgccggctactgaagctgtgccgacgaccactcgacttccgcccacgtc
gttgatcaaccctcatcgaggtgatggaacggctcctgccgttgctggtc
cagtcccaatcgtaggagttgctgtttcacacggtgacaagaaggtcagt
ggatccaaagcacgcaaagagcggaagaactacgactctgattcatcagc
atcttctctttcttctcgccggtcaaccgggtctgactcgtccgactcgt
cggtagaagcagcccgtcatgagcgttcgtcacgctcaaagcggtcatca
gccacccaagatgtgatacgcgcccgctcgaagggaaggaagcactccgg
actaaaggagttgaagcctatcaatctgctgtacaagaagctgttgtcat
accggtatgaccgtttggaggactcctcattggatagaactccccgtggg
acgggaaaggttaaagactgtatcaaacggatgcagctgtcgctccgtaa
tcaactgtttacaggcgatgatcccatcttggtgtttgattttctatcac
gctttgtagcggaagccaacatcctggggatgaatgaaggacaggcgttt
gtcgcgctgccctattttctacgcggacttgaggaagatcagaaaaactc
tgtaagaggttcatcgcgcgcctctgaaggaggggttccttgctggcctg
aagcagttcagtatctactgaggtcctatgccactggtaccgccatccag
tcggctatcctcgctctgagggacaccaaacaacgccctggcgaaacgga
aaccgactactcggtgcgtctgaataagaccttccaccgttgtagcaatg
ttcattccgctcaagagcgttgtaccatgttcgttgatggactagacccg
gctatacggaccctagtggcccgtcgccgtgaagagaaccgtaagactac
gtacttggaactggtgcacgttgatgttggaaccggaaacccgtcggcgt
caatgctggctgatgaacactcccaaaaaaagtatgatcaggtgcacttt
gcccgtagcgacgtgctttcaatcccgacaacggagctttcctcaaccac
ggatgcctcgtttcaaacggctccggacaatacactgctatacgcagatt
cgaaccgagttcgacagcctcgactgtcatatgagaacggtggaacccgg
gcttcacggcctggctggcaagcttcccgcccagcgtgcgttttaaccat
gcgtgagtgggcacaagtcattgccaactacgaatccctctcacctgatg
agaaggcttccgttccgatggcatcgtacatccgcgcgaagatggatatt
ccacgcacaattgcggctccggttgcccagaacatggtgacctctcaccc
ccgcggaatctgctcagaaaacctaattgtgggagtctcctctcttggag
aggcgccctcagagttgaggctgaaggcgcccgaggcgtccccgcctcgc
tcccaggtccgaatcctctcgaggaaacaggccgtcgaagacgtgaactc
agaacaccttggtgttcttcgtcgaccgtggatacgggtaagaaataacc
ggttcccggatagagttatggtgatggccaaactcaattacaaggtctat
gccgaccttggcctttcaccccagtttacggtgcgttatctcactgtatt
agatacaggcgcaggtctgaacttcattgctgagacagcattgccacccg
ccttgcggtcacacactcgccgtggcgacattcctgaagtcgctgacgcg
aataacaacccgttttcaacggtaggatacatcgagttggtaatccactt
gggctcatgcgtggtgaagctcgactttgtcgtttgtcggtccctggccg
ccccagtcattttgggttgtgacttttgcgaccgctttgtcgatgccatt
aggctccgccagaggcgtgttgaaatggaagatggttcgtccgtgccgat
tgttcgtcgtcctgtgaggcatgcctccaagaagcatgtacctctacctg
cggcacaggaagcaccaccgagttctcgggaatctactaagcttcgtgtt
gcctccgagacacgcgtgcctccagagtctcaagtctgggtacaggtgaa
ctcccgtcaacacggcttacgaatcgtccagccattgccgcaaaacaacc
cagtatctggtgaaaaaccaattgattggctcggtcatgccgcatccaac
tgcgttggtaccgacgaagatgactgctgccgatgtgctcggaatcgttc
actataa
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