Ggra9298.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9298.t1
Unique NameGgra9298.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Homology
BLAST of Ggra9298.t1 vs. uniprot
Match: A0A2V3IK60 (NB-ARC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK60_9FLOR)

HSP 1 Score: 288 bits (738), Expect = 5.040e-87
Identity = 130/192 (67.71%), Postives = 165/192 (85.94%), Query Frame = 0
Query:    1 MLSEEIEDCEDIEEATQVLCNWAHSIVEEADLTGEGTREHRGGLEHIVGQGLKHAKQKLLNRGFPERVSLSLSENFERLCVMQKQKAMPVHILMKVWTLGYKDTMRVAKALKELSLVELGRGKSVGKVISVHDKIIEVCRDRLGEKVFQHHKQLLESFIAVSRAIHWQKDMWYRPWWLLSAEDEYMMENLGY 192
            ML EEIE+CED+EEAT+VL  WAHS+VEEADLTGEGTRE+ GGL HIVGQGLKHAKQ L+ RGFPE +S S++ENF RLCV+QKQKAMPVH+LMKVW+LG ++T R+AK +KE+SL+E G  KS  +VI VHDKII++CR+++G + F++H++LLESF++ S+ IHW KD+WYRPWW+LS  DEY+MENL Y
Sbjct:  373 MLREEIENCEDVEEATEVLRRWAHSVVEEADLTGEGTREYPGGLHHIVGQGLKHAKQNLIKRGFPESLSSSVAENFRRLCVIQKQKAMPVHVLMKVWSLGLRETRRIAKTMKEMSLIEFGFDKSTVEVIRVHDKIIDLCREQMGTEAFRYHEELLESFVSHSKRIHWHKDVWYRPWWVLSGRDEYLMENLEY 564          
BLAST of Ggra9298.t1 vs. uniprot
Match: A0A2V3JAM0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JAM0_9FLOR)

HSP 1 Score: 135 bits (341), Expect = 1.210e-37
Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 0
Query:   82 MQKQKAMPVHILMKVWTLGYKDTMRVAKALKELSLVELGRGKSVGKVISVHDKIIEVCRDRL----GEKVFQHHKQLLESFIAVSRAIHWQKDMWYRPWWLLSAEDEYMMENLGY 192
            MQKQK MPV +L K W LG KDT+R+ KA++E+SL+E+ R    GK I  HDKII+ CR+++     E + + HK+LL+SF++ S  IHW  D+WYRPWW  S  DEY+MENLGY
Sbjct:    1 MQKQKTMPVGVLTKHWKLGKKDTLRLVKAMEEMSLLEVVRLNKFGKAIRAHDKIIDFCREQVVSENEEGIVKQHKELLKSFLSASTQIHWHTDVWYRPWWDRSVRDEYVMENLGY 115          
BLAST of Ggra9298.t1 vs. uniprot
Match: A0A2V3II03 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II03_9FLOR)

HSP 1 Score: 121 bits (303), Expect = 6.050e-32
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 0
Query:   88 MPVHILMKVWTLGYKDTMRVAKALKELSLVELGRGKSVGKVISVHDKIIEVCRDR-LGEK---VFQHHKQLLESFIAVSRAIHWQKDMWYRPWWLLSAEDEYMMENLGY 192
            MP  +LM +W LG KDT+R+  A+KE+SL+E+ R     K I  HDKII++CR++ LGE    + + HK+LLESF+++ R IHW  D+WYRPWW  S  ++Y++ENLGY
Sbjct:    1 MPAGVLMNLWDLGKKDTLRLVNAMKEMSLLEVIRVNKFQKTIRAHDKIIDLCREQVLGESKEGIVKQHKKLLESFLSMPRRIHWHSDVWYRPWWDRSVGNKYVIENLGY 109          
BLAST of Ggra9298.t1 vs. uniprot
Match: A0A2V3J5M4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5M4_9FLOR)

HSP 1 Score: 56.6 bits (135), Expect = 7.380e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0
Query:   12 IEEATQVLCNWAHSIVEEADLTGEGTREHRGGLEHIVGQGLKH 54
            +EEAT+ LC WA S+VEEADL   GTRE+   L+HIV Q LKH
Sbjct:    1 MEEATENLCIWAQSVVEEADLISAGTREYPRALQHIVTQSLKH 43          
The following BLAST results are available for this feature:
BLAST of Ggra9298.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IK605.040e-8767.71NB-ARC domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3JAM01.210e-3753.91Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3II036.050e-3250.46Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5M47.380e-862.79Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 66..143
e-value: 3.7E-6
score: 28.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:88190..88771 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9298.t1Ggra9298.t1Gracilaria gracilis GNS1m malemRNAtig00000863_pilon 88190..88771 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9298.t1 ID=Ggra9298.t1|Name=Ggra9298.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MLSEEIEDCEDIEEATQVLCNWAHSIVEEADLTGEGTREHRGGLEHIVGQ
GLKHAKQKLLNRGFPERVSLSLSENFERLCVMQKQKAMPVHILMKVWTLG
YKDTMRVAKALKELSLVELGRGKSVGKVISVHDKIIEVCRDRLGEKVFQH
HKQLLESFIAVSRAIHWQKDMWYRPWWLLSAEDEYMMENLGYC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf