Ggra9318.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9318.t1
Unique NameGgra9318.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:622864..623238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_84883
PFAMsDUF4419
Max annot lvl2759|Eukaryota
Evalue9.63e-15
EggNOG OGs29GQM@1|root,2RPX4@2759|Eukaryota
DescriptionDomain of unknown function (DUF4419)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9318Ggra9318Gracilaria gracilis GNS1m malegenetig00000863_pilon 622864..623238 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9318.t1.start1Ggra9318.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 622864..622866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9318.t1.CDS1Ggra9318.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 622864..623238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9318.t1.exon1Ggra9318.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 622864..623238 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9318.t1.stop1Ggra9318.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 623236..623238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9318.t1Ggra9318.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 622864..623238 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9318.t1 ID=Ggra9318.t1|Name=Ggra9318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=125bp
MPANTLVEHHAQSLMQICLLALAEHYLLTLSPDHVWLCIAYGAAKHIDNN
AEALRTRFVFFEGNKKLTVRKDDAVVANTPVHEWESDVFRESSEHVEDIA
WKFERSNACCERMDQQSLSVPCRR*
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spliced messenger RNA

>Ggra9318.t1 ID=Ggra9318.t1|Name=Ggra9318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000863_pilon:622864..623238+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCGAACACGCTTGTCGAACACCACGCGCAGTCGCTCATGCAGAT
CTGTCTTCTGGCGTTGGCGGAGCACTATCTGCTTACTCTGTCGCCGGACC
ACGTATGGTTGTGCATTGCGTATGGAGCTGCAAAGCATATTGACAACAAC
GCAGAAGCGCTTCGCACACGATTTGTATTCTTCGAAGGAAATAAGAAGCT
GACGGTACGCAAAGATGATGCGGTTGTGGCGAATACTCCCGTGCATGAAT
GGGAGTCTGACGTGTTTCGGGAATCCAGCGAGCATGTTGAAGACATAGCA
TGGAAGTTCGAGCGAAGCAACGCCTGTTGTGAGCGGATGGATCAACAATC
TTTATCCGTACCTTGTCGACGGTAA
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protein sequence of Ggra9318.t1

>Ggra9318.t1 ID=Ggra9318.t1|Name=Ggra9318.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=125bp
MPANTLVEHHAQSLMQICLLALAEHYLLTLSPDHVWLCIAYGAAKHIDNN
AEALRTRFVFFEGNKKLTVRKDDAVVANTPVHEWESDVFRESSEHVEDIA
WKFERSNACCERMDQQSLSVPCRR*
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mRNA from alignment at tig00000863_pilon:622864..623238+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9318.t1 ID=Ggra9318.t1|Name=Ggra9318.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000863_pilon:622864..623238+ (Gracilaria gracilis GNS1m male)
ATGCCGGCGAACACGCTTGTCGAACACCACGCGCAGTCGCTCATGCAGAT
CTGTCTTCTGGCGTTGGCGGAGCACTATCTGCTTACTCTGTCGCCGGACC
ACGTATGGTTGTGCATTGCGTATGGAGCTGCAAAGCATATTGACAACAAC
GCAGAAGCGCTTCGCACACGATTTGTATTCTTCGAAGGAAATAAGAAGCT
GACGGTACGCAAAGATGATGCGGTTGTGGCGAATACTCCCGTGCATGAAT
GGGAGTCTGACGTGTTTCGGGAATCCAGCGAGCATGTTGAAGACATAGCA
TGGAAGTTCGAGCGAAGCAACGCCTGTTGTGAGCGGATGGATCAACAATC
TTTATCCGTACCTTGTCGACGGTAA
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Coding sequence (CDS) from alignment at tig00000863_pilon:622864..623238+

>Ggra9318.t1 ID=Ggra9318.t1|Name=Ggra9318.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=375bp|location=Sequence derived from alignment at tig00000863_pilon:622864..623238+ (Gracilaria gracilis GNS1m male)
ATGCCGGCGAACACGCTTGTCGAACACCACGCGCAGTCGCTCATGCAGAT
CTGTCTTCTGGCGTTGGCGGAGCACTATCTGCTTACTCTGTCGCCGGACC
ACGTATGGTTGTGCATTGCGTATGGAGCTGCAAAGCATATTGACAACAAC
GCAGAAGCGCTTCGCACACGATTTGTATTCTTCGAAGGAAATAAGAAGCT
GACGGTACGCAAAGATGATGCGGTTGTGGCGAATACTCCCGTGCATGAAT
GGGAGTCTGACGTGTTTCGGGAATCCAGCGAGCATGTTGAAGACATAGCA
TGGAAGTTCGAGCGAAGCAACGCCTGTTGTGAGCGGATGGATCAACAATC
TTTATCCGTACCTTGTCGACGGTAA
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