Ggra9306.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9306.t1
Unique NameGgra9306.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:449230..450423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29850.GGTG_10887T0
Max annot lvl4751|Fungi
Evalue1.21e-49
EggNOG OGs292CQ@1|root,2R994@2759|Eukaryota,38M38@33154|Opisthokonta,3PNZM@4751|Fungi,3R882@4890|Ascomycota,21EKA@147550|Sordariomycetes,41QDK@639021|Magnaporthales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9306Ggra9306Gracilaria gracilis GNS1m malegenetig00000863_pilon 449230..450423 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9306.t1.start1Ggra9306.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 449230..449232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9306.t1.CDS1Ggra9306.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 449230..450423 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9306.t1.exon1Ggra9306.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 449230..450423 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9306.t1.stop1Ggra9306.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 450421..450423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9306.t1Ggra9306.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 449230..450423 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9306.t1 ID=Ggra9306.t1|Name=Ggra9306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MWITFPKSILITALVCSLFLCFSNADTLTTNQTLSGIHLPVQFRQISQQV
LNCKSSDPLLRAICDVGLATVNAELKSRGVAIRKDGVLFTYDDPKDKRIP
TGHSCSVTAKVRHTHFGAHFSSSSTLDLSGNSLSEALALALKLPVRANGR
VDVRQRFGYRFLGKCKRLGRDTFALKADASTTADVVVGFALNPSIKTLSS
GNYELTLMPVIATLFELENLDFDFRVSNVSPITPVLTFIVGFKSSILRTI
TDIFKGKSLKRTFERLGRSLIYDLGAPIVLGVGALPRPLEDLIFDSLLNV
AERRVEKEAKGFGEDVEQKLNEELRQALKLGADGKRKFVIKSNILELINT
AGKNADVFVKERSRRGPRRGPSRRDPRSNPSRERRCRGLNCRYYQEP*
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spliced messenger RNA

>Ggra9306.t1 ID=Ggra9306.t1|Name=Ggra9306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000863_pilon:449230..450423+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGATTACCTTTCCAAAGTCCATTCTCATTACTGCTCTTGTTTGCTC
TCTCTTTCTCTGCTTTTCGAATGCTGACACGTTAACCACCAATCAAACGC
TTTCGGGCATACATCTCCCGGTGCAGTTCAGGCAAATCTCACAACAAGTT
CTGAACTGCAAGTCTTCTGATCCCCTCCTACGCGCCATTTGCGACGTTGG
ACTTGCAACTGTGAACGCCGAATTGAAATCCAGGGGAGTCGCCATTCGCA
AAGATGGAGTTTTATTCACATACGACGATCCAAAGGACAAGCGTATTCCA
ACCGGACACAGCTGCTCGGTAACAGCGAAGGTTCGACATACCCACTTTGG
AGCGCATTTTTCAAGCTCTTCTACTTTGGATCTTTCTGGAAACTCCTTGT
CTGAAGCACTGGCTTTAGCTCTCAAACTTCCGGTTCGAGCTAATGGTAGA
GTGGATGTGCGACAACGTTTTGGTTACCGTTTCCTCGGAAAATGTAAACG
ATTGGGAAGAGATACGTTTGCCCTCAAGGCCGATGCAAGCACTACAGCTG
ATGTTGTTGTGGGCTTTGCACTCAATCCATCAATCAAAACATTATCATCT
GGCAATTACGAATTGACGCTCATGCCGGTGATTGCCACTTTGTTTGAACT
TGAAAACCTCGATTTCGATTTCCGTGTGAGCAATGTGAGCCCCATCACTC
CCGTTTTGACTTTCATCGTAGGTTTCAAATCGTCCATATTACGAACCATC
ACCGATATATTCAAAGGGAAGAGTCTGAAGAGGACTTTTGAGAGACTTGG
CAGAAGTTTGATATATGATCTCGGAGCGCCAATTGTGCTGGGAGTTGGGG
CTCTTCCAAGACCTCTCGAAGATCTCATTTTCGACTCCCTCTTAAACGTA
GCCGAACGAAGGGTTGAGAAAGAGGCAAAAGGATTTGGAGAAGATGTGGA
ACAGAAACTGAACGAAGAGCTTCGACAAGCGTTGAAACTCGGCGCAGATG
GAAAACGAAAGTTTGTCATTAAATCGAACATTCTTGAGTTGATCAACACA
GCGGGAAAGAATGCGGACGTTTTCGTTAAGGAGAGAAGTCGCCGTGGTCC
CCGTCGAGGCCCCAGTCGCCGCGACCCCCGTAGCAACCCATCTCGTGAGC
GGCGCTGCCGAGGCCTGAATTGCCGTTATTATCAGGAGCCGTGA
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protein sequence of Ggra9306.t1

>Ggra9306.t1 ID=Ggra9306.t1|Name=Ggra9306.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MWITFPKSILITALVCSLFLCFSNADTLTTNQTLSGIHLPVQFRQISQQV
LNCKSSDPLLRAICDVGLATVNAELKSRGVAIRKDGVLFTYDDPKDKRIP
TGHSCSVTAKVRHTHFGAHFSSSSTLDLSGNSLSEALALALKLPVRANGR
VDVRQRFGYRFLGKCKRLGRDTFALKADASTTADVVVGFALNPSIKTLSS
GNYELTLMPVIATLFELENLDFDFRVSNVSPITPVLTFIVGFKSSILRTI
TDIFKGKSLKRTFERLGRSLIYDLGAPIVLGVGALPRPLEDLIFDSLLNV
AERRVEKEAKGFGEDVEQKLNEELRQALKLGADGKRKFVIKSNILELINT
AGKNADVFVKERSRRGPRRGPSRRDPRSNPSRERRCRGLNCRYYQEP*
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mRNA from alignment at tig00000863_pilon:449230..450423+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9306.t1 ID=Ggra9306.t1|Name=Ggra9306.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000863_pilon:449230..450423+ (Gracilaria gracilis GNS1m male)
ATGTGGATTACCTTTCCAAAGTCCATTCTCATTACTGCTCTTGTTTGCTC
TCTCTTTCTCTGCTTTTCGAATGCTGACACGTTAACCACCAATCAAACGC
TTTCGGGCATACATCTCCCGGTGCAGTTCAGGCAAATCTCACAACAAGTT
CTGAACTGCAAGTCTTCTGATCCCCTCCTACGCGCCATTTGCGACGTTGG
ACTTGCAACTGTGAACGCCGAATTGAAATCCAGGGGAGTCGCCATTCGCA
AAGATGGAGTTTTATTCACATACGACGATCCAAAGGACAAGCGTATTCCA
ACCGGACACAGCTGCTCGGTAACAGCGAAGGTTCGACATACCCACTTTGG
AGCGCATTTTTCAAGCTCTTCTACTTTGGATCTTTCTGGAAACTCCTTGT
CTGAAGCACTGGCTTTAGCTCTCAAACTTCCGGTTCGAGCTAATGGTAGA
GTGGATGTGCGACAACGTTTTGGTTACCGTTTCCTCGGAAAATGTAAACG
ATTGGGAAGAGATACGTTTGCCCTCAAGGCCGATGCAAGCACTACAGCTG
ATGTTGTTGTGGGCTTTGCACTCAATCCATCAATCAAAACATTATCATCT
GGCAATTACGAATTGACGCTCATGCCGGTGATTGCCACTTTGTTTGAACT
TGAAAACCTCGATTTCGATTTCCGTGTGAGCAATGTGAGCCCCATCACTC
CCGTTTTGACTTTCATCGTAGGTTTCAAATCGTCCATATTACGAACCATC
ACCGATATATTCAAAGGGAAGAGTCTGAAGAGGACTTTTGAGAGACTTGG
CAGAAGTTTGATATATGATCTCGGAGCGCCAATTGTGCTGGGAGTTGGGG
CTCTTCCAAGACCTCTCGAAGATCTCATTTTCGACTCCCTCTTAAACGTA
GCCGAACGAAGGGTTGAGAAAGAGGCAAAAGGATTTGGAGAAGATGTGGA
ACAGAAACTGAACGAAGAGCTTCGACAAGCGTTGAAACTCGGCGCAGATG
GAAAACGAAAGTTTGTCATTAAATCGAACATTCTTGAGTTGATCAACACA
GCGGGAAAGAATGCGGACGTTTTCGTTAAGGAGAGAAGTCGCCGTGGTCC
CCGTCGAGGCCCCAGTCGCCGCGACCCCCGTAGCAACCCATCTCGTGAGC
GGCGCTGCCGAGGCCTGAATTGCCGTTATTATCAGGAGCCGTGA
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Coding sequence (CDS) from alignment at tig00000863_pilon:449230..450423+

>Ggra9306.t1 ID=Ggra9306.t1|Name=Ggra9306.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000863_pilon:449230..450423+ (Gracilaria gracilis GNS1m male)
ATGTGGATTACCTTTCCAAAGTCCATTCTCATTACTGCTCTTGTTTGCTC
TCTCTTTCTCTGCTTTTCGAATGCTGACACGTTAACCACCAATCAAACGC
TTTCGGGCATACATCTCCCGGTGCAGTTCAGGCAAATCTCACAACAAGTT
CTGAACTGCAAGTCTTCTGATCCCCTCCTACGCGCCATTTGCGACGTTGG
ACTTGCAACTGTGAACGCCGAATTGAAATCCAGGGGAGTCGCCATTCGCA
AAGATGGAGTTTTATTCACATACGACGATCCAAAGGACAAGCGTATTCCA
ACCGGACACAGCTGCTCGGTAACAGCGAAGGTTCGACATACCCACTTTGG
AGCGCATTTTTCAAGCTCTTCTACTTTGGATCTTTCTGGAAACTCCTTGT
CTGAAGCACTGGCTTTAGCTCTCAAACTTCCGGTTCGAGCTAATGGTAGA
GTGGATGTGCGACAACGTTTTGGTTACCGTTTCCTCGGAAAATGTAAACG
ATTGGGAAGAGATACGTTTGCCCTCAAGGCCGATGCAAGCACTACAGCTG
ATGTTGTTGTGGGCTTTGCACTCAATCCATCAATCAAAACATTATCATCT
GGCAATTACGAATTGACGCTCATGCCGGTGATTGCCACTTTGTTTGAACT
TGAAAACCTCGATTTCGATTTCCGTGTGAGCAATGTGAGCCCCATCACTC
CCGTTTTGACTTTCATCGTAGGTTTCAAATCGTCCATATTACGAACCATC
ACCGATATATTCAAAGGGAAGAGTCTGAAGAGGACTTTTGAGAGACTTGG
CAGAAGTTTGATATATGATCTCGGAGCGCCAATTGTGCTGGGAGTTGGGG
CTCTTCCAAGACCTCTCGAAGATCTCATTTTCGACTCCCTCTTAAACGTA
GCCGAACGAAGGGTTGAGAAAGAGGCAAAAGGATTTGGAGAAGATGTGGA
ACAGAAACTGAACGAAGAGCTTCGACAAGCGTTGAAACTCGGCGCAGATG
GAAAACGAAAGTTTGTCATTAAATCGAACATTCTTGAGTTGATCAACACA
GCGGGAAAGAATGCGGACGTTTTCGTTAAGGAGAGAAGTCGCCGTGGTCC
CCGTCGAGGCCCCAGTCGCCGCGACCCCCGTAGCAACCCATCTCGTGAGC
GGCGCTGCCGAGGCCTGAATTGCCGTTATTATCAGGAGCCGTGA
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