Ggra9308.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9308.t1
Unique NameGgra9308.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:484844..485932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_01819T0
PFAMsExostosin
Max annot lvl2759|Eukaryota
Evalue3.88e-46
EggNOG OGsKOG1021@1|root,KOG1021@2759|Eukaryota
Descriptionmacromolecule glycosylation
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9308Ggra9308Gracilaria gracilis GNS1m malegenetig00000863_pilon 484844..485932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9308.t1Ggra9308.t1Gracilaria gracilis GNS1m malepolypeptidetig00000863_pilon 484844..485932 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9308.t1.stop1Ggra9308.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000863_pilon 484844..484846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9308.t1.CDS1Ggra9308.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000863_pilon 484844..485178 -
Ggra9308.t1.CDS2Ggra9308.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000863_pilon 485260..485428 -
Ggra9308.t1.CDS3Ggra9308.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000863_pilon 485645..485932 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9308.t1.exon1Ggra9308.t1.exon1Gracilaria gracilis GNS1m maleexontig00000863_pilon 484844..485178 -
Ggra9308.t1.exon2Ggra9308.t1.exon2Gracilaria gracilis GNS1m maleexontig00000863_pilon 485260..485428 -
Ggra9308.t1.exon3Ggra9308.t1.exon3Gracilaria gracilis GNS1m maleexontig00000863_pilon 485645..485932 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9308.t1.intron1Ggra9308.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000863_pilon 485179..485259 -
Ggra9308.t1.intron2Ggra9308.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000863_pilon 485429..485644 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9308.t1.start1Ggra9308.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000863_pilon 485930..485932 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9308.t1 ID=Ggra9308.t1|Name=Ggra9308.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MNWISERYPFWNQSNGRDHVYVFSQGFAARLAGNWQKYNNGISMVHNGEF
TAPEYTPHKYITIPPELRAYLQPYWATTYGTKSYLSKKYLAHFGGQVVDQ
SVEDHRGRNFSRGVRQYIVSEFSKKPDYRITGVRSQTYLNDMMKSRFCLA
PEGWHPWSPRPYYAVLMGCIPVIISEVQELAFEDQIEWGSFAVWVRPQDV
RNLDSILRSFSKEEIQLRRDRMSKVWRAVWYGDNGLANEAIMQELFQRKY
RVRPKRLFSASNR*
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spliced messenger RNA

>Ggra9308.t1 ID=Ggra9308.t1|Name=Ggra9308.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000863_pilon:484844..485932- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGGATATCCGAACGATATCCATTTTGGAACCAAAGCAACGGACG
AGACCACGTTTATGTCTTTTCTCAAGGCTTCGCGGCAAGGTTGGCAGGAA
ACTGGCAAAAGTATAACAATGGTATTTCCATGGTGCATAATGGTGAGTTT
ACGGCGCCAGAGTATACACCTCACAAATACATCACAATACCCCCCGAACT
ACGAGCATACCTACAACCATACTGGGCAACAACATATGGAACAAAAAGTT
ACCTTTCTAAGAAGTATCTCGCCCATTTTGGTGGTCAGGTAGTAGACCAG
TCGGTTGAGGACCACAGGGGACGCAATTTCTCCCGTGGAGTTCGCCAATA
CATCGTTTCCGAATTCTCCAAGAAGCCAGATTACAGAATAACAGGTGTCC
GGTCCCAAACCTATCTTAATGATATGATGAAGAGCCGCTTCTGCCTAGCT
CCTGAAGGATGGCACCCGTGGAGTCCAAGACCGTATTATGCGGTGCTCAT
GGGATGCATTCCTGTGATAATATCTGAGGTGCAGGAATTAGCTTTTGAAG
ACCAGATAGAATGGGGTTCGTTCGCTGTTTGGGTTCGCCCGCAGGATGTG
AGGAATCTTGATTCAATCTTGCGTTCGTTCTCAAAAGAAGAAATTCAACT
TCGAAGGGACAGAATGAGCAAAGTATGGAGAGCAGTGTGGTACGGAGACA
ATGGTCTTGCGAATGAGGCAATCATGCAGGAATTGTTTCAGCGAAAGTAT
CGTGTCCGACCAAAGCGGCTTTTCAGTGCGTCAAACCGATGA
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protein sequence of Ggra9308.t1

>Ggra9308.t1 ID=Ggra9308.t1|Name=Ggra9308.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MNWISERYPFWNQSNGRDHVYVFSQGFAARLAGNWQKYNNGISMVHNGEF
TAPEYTPHKYITIPPELRAYLQPYWATTYGTKSYLSKKYLAHFGGQVVDQ
SVEDHRGRNFSRGVRQYIVSEFSKKPDYRITGVRSQTYLNDMMKSRFCLA
PEGWHPWSPRPYYAVLMGCIPVIISEVQELAFEDQIEWGSFAVWVRPQDV
RNLDSILRSFSKEEIQLRRDRMSKVWRAVWYGDNGLANEAIMQELFQRKY
RVRPKRLFSASNR*
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mRNA from alignment at tig00000863_pilon:484844..485932-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9308.t1 ID=Ggra9308.t1|Name=Ggra9308.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000863_pilon:484844..485932- (Gracilaria gracilis GNS1m male)
ATGAACTGGATATCCGAACGATATCCATTTTGGAACCAAAGCAACGGACG
AGACCACGTTTATGTCTTTTCTCAAGGCTTCGCGGCAAGGTTGGCAGGAA
ACTGGCAAAAGTATAACAATGGTATTTCCATGGTGCATAATGGTGAGTTT
ACGGCGCCAGAGTATACACCTCACAAATACATCACAATACCCCCCGAACT
ACGAGCATACCTACAACCATACTGGGCAACAACATATGGAACAAAAAGTT
ACCTTTCTAAGAAGTATCTCGCCCATTTTGGTGGTCAGGTAAGCTGAACA
TGATATCTATCACCCGCAATATCTCGTCATGCTATCCAAGAACTGCCCTA
CTCACAGTTTGACGTAGGGGTTGACAGCAATACCGCGTTTTCCGAGAATC
TCTCATTGCACTGGTCTAACGAATTTTGTCTTGCCCGCAACATTACTCAT
GCATCCTTTCCTTCCCGTCATGAAATTTCGTTGACTACACACATGCATTT
GCAGGTAGTAGACCAGTCGGTTGAGGACCACAGGGGACGCAATTTCTCCC
GTGGAGTTCGCCAATACATCGTTTCCGAATTCTCCAAGAAGCCAGATTAC
AGAATAACAGGTGTCCGGTCCCAAACCTATCTTAATGATATGATGAAGAG
CCGCTTCTGCCTAGCTCCTGAAGGTAAGTACGTGCTCAGCAGAGCCCTCC
GCCGAATATGTACTAAAAACAATAGCTCATGTGCTCATAAACTGATCGAC
ATAGGATGGCACCCGTGGAGTCCAAGACCGTATTATGCGGTGCTCATGGG
ATGCATTCCTGTGATAATATCTGAGGTGCAGGAATTAGCTTTTGAAGACC
AGATAGAATGGGGTTCGTTCGCTGTTTGGGTTCGCCCGCAGGATGTGAGG
AATCTTGATTCAATCTTGCGTTCGTTCTCAAAAGAAGAAATTCAACTTCG
AAGGGACAGAATGAGCAAAGTATGGAGAGCAGTGTGGTACGGAGACAATG
GTCTTGCGAATGAGGCAATCATGCAGGAATTGTTTCAGCGAAAGTATCGT
GTCCGACCAAAGCGGCTTTTCAGTGCGTCAAACCGATGA
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Coding sequence (CDS) from alignment at tig00000863_pilon:484844..485932-

>Ggra9308.t1 ID=Ggra9308.t1|Name=Ggra9308.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000863_pilon:484844..485932- (Gracilaria gracilis GNS1m male)
ATGAACTGGATATCCGAACGATATCCATTTTGGAACCAAAGCAACGGACG
AGACCACGTTTATGTCTTTTCTCAAGGCTTCGCGGCAAGGTTGGCAGGAA
ACTGGCAAAAGTATAACAATGGTATTTCCATGGTGCATAATGGTGAGTTT
ACGGCGCCAGAGTATACACCTCACAAATACATCACAATACCCCCCGAACT
ACGAGCATACCTACAACCATACTGGGCAACAACATATGGAACAAAAAGTT
ACCTTTCTAAGAAGTATCTCGCCCATTTTGGTGGTCAGGTAGTAGACCAG
TCGGTTGAGGACCACAGGGGACGCAATTTCTCCCGTGGAGTTCGCCAATA
CATCGTTTCCGAATTCTCCAAGAAGCCAGATTACAGAATAACAGGTGTCC
GGTCCCAAACCTATCTTAATGATATGATGAAGAGCCGCTTCTGCCTAGCT
CCTGAAGGATGGCACCCGTGGAGTCCAAGACCGTATTATGCGGTGCTCAT
GGGATGCATTCCTGTGATAATATCTGAGGTGCAGGAATTAGCTTTTGAAG
ACCAGATAGAATGGGGTTCGTTCGCTGTTTGGGTTCGCCCGCAGGATGTG
AGGAATCTTGATTCAATCTTGCGTTCGTTCTCAAAAGAAGAAATTCAACT
TCGAAGGGACAGAATGAGCAAAGTATGGAGAGCAGTGTGGTACGGAGACA
ATGGTCTTGCGAATGAGGCAATCATGCAGGAATTGTTTCAGCGAAAGTAT
CGTGTCCGACCAAAGCGGCTTTTCAGTGCGTCAAACCGATGA
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