Ggra9310.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9310.t1
Unique NameGgra9310.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length364
Homology
[Close]
BLAST of Ggra9310.t1 vs. uniprot
Match: A0A2V3IQU1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQU1_9FLOR)

HSP 1 Score: 132 bits (331), Expect = 5.080e-31
Identity = 96/277 (34.66%), Postives = 140/277 (50.54%), Query Frame = 0 
Query:   50 VLAVIVSVLAFVAGRAGIIDRHNGFRSSRLYPALA--QKLHDARHFYSIDR--PGGGPTLS-----NYHSMSRPLNPSYASRVDLYSSRFDAFVQSDAS---STVEDFALDERVPTGQCSKRRLCRARLTLVKEGSQVVIKAGYYIYIKDGSVRTVSEETKSKLKKTTPTQARKWASTLLEGASARLAEVKCTVTVDEIAKAIMDGKNTVLSCPKTGDSRCDALETIRECTLPEP----REVDPCAEFVKSSSGVDSLAALQ--VECPTAQFYYNRV 308
            V+AV++  LA  + R    D H    S R+   LA  +   +AR+ ++  R  P  G T       N++   RP            SS      ++D+S    TVEDF +++R+ TG C+  RLCRAR+ + KEG+QV IK+GYYI+   G V  ++  T+  +KK T  +A  WA  LL    + L +V+C VT D IA  IM+ K+   SCP+T    C  L  ++ CT+ EP     +   C EF++SSS V +   L     C    F YNR+
Sbjct:   53 VVAVVLGSLALFSFRG--YDAHQRL-SVRVPDGLAGFRSFSEARNLWNTGRYTPTSGVTPDTFSSYNWYQTQRPAYSKAYGVAKTSSSFLPPVTRADSSCGTGTVEDFVVEKRISTGDCNGGRLCRARVIVSKEGNQVTIKSGYYIFRNKG-VTPLNPYTRRNVKKVTRREATIWAQNLLSKIQSDLDKVQCPVTADMIADGIMNTKDDAASCPRTDHPLCSRLFLLKTCTIAEPSGETEQEKKCVEFLESSSPVATFEELSRTSPCEDVSFLYNRI 325
The following BLAST results are available for this feature:
BLAST of Ggra9310.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQU15.080e-3134.66Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 362..363
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 68..363
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 45..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..44
NoneNo IPR availableTMHMMTMhelixcoord: 46..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:495140..496429 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9310.t1Ggra9310.t1Gracilaria gracilis GNS1m malemRNAtig00000863_pilon 495140..496429 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9310.t1 ID=Ggra9310.t1|Name=Ggra9310.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=364bp
MESVANPCHSQYQSILGGRGNTASSAQVTSGVIRNVNTAPLFRRFGSLVV
LAVIVSVLAFVAGRAGIIDRHNGFRSSRLYPALAQKLHDARHFYSIDRPG
GGPTLSNYHSMSRPLNPSYASRVDLYSSRFDAFVQSDASSTVEDFALDER
VPTGQCSKRRLCRARLTLVKEGSQVVIKAGYYIYIKDGSVRTVSEETKSK
LKKTTPTQARKWASTLLEGASARLAEVKCTVTVDEIAKAIMDGKNTVLSC
PKTGDSRCDALETIRECTLPEPREVDPCAEFVKSSSGVDSLAALQVECPT
AQFYYNRVDEGIFIIDVASSDQGNAPKEVLDVAESYGCAFTYAFFVGAGN
SVESIVDASCAAQ*
back to top