Ggra9301.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9301.t1
Unique NameGgra9301.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Homology
BLAST of Ggra9301.t1 vs. uniprot
Match: A0A2V3J3T3 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3T3_9FLOR)

HSP 1 Score: 159 bits (403), Expect = 5.570e-43
Identity = 83/217 (38.25%), Postives = 127/217 (58.53%), Query Frame = 0
Query:  161 RNGLGLSRRALEGWTKAVPPVPALPLTRSFMSAFAEYFISQNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIAGINIENYKTGPMQFTALRDKHILGILQSYVENISQSPNARLFNFSYPRYNTLFKEAATYFGLEAGRFTSHSARIGGALSDHLDGSSAETIAIIGRWKSFSSLQRYLTNGRAALARMRTSSDSQRLIRECS 377
            + GL LS R+++GW K+    P+ P T+  + AF    +      A+V L + W  Y+R SE L+LRV +V  P D R+A     +AGI I + KTGP+QF +++D++ + +L  Y++ +S   +  LF   Y  Y    K+  ++F +   +FT+HSARIGGAL D + G+ AE IA+ GRW S +SL+ YLT GRA L +M  +      I++ S
Sbjct:   16 KTGLPLSHRSIKGWEKSHNAQPSTPFTQEILHAFVMKVLLDGTAEAAVCLALSWAGYLRVSEALALRVENVALPEDPRVASYGNEVAGIAILDAKTGPLQFVSIKDRNCITLLTYYMKKLSNIQDT-LFTIKYSTYAAQLKKVMSFFNVTHLKFTTHSARIGGALHDFMRGTKAEDIALKGRWNSLTSLRHYLTTGRAWLMKMNITDQQTAKIKQYS 231          
BLAST of Ggra9301.t1 vs. uniprot
Match: A0A2V3IZL9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZL9_9FLOR)

HSP 1 Score: 104 bits (259), Expect = 4.840e-23
Identity = 65/164 (39.63%), Postives = 89/164 (54.27%), Query Frame = 0
Query:  190 FMSAFAEYFISQNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIAGINIENYKTGPMQFTALRDKHILGILQSYVENISQSPNARL----FNFSYPRYNTLFKEAATYFGLEAGRFTSHSARIGGALSDHLDGSSAETIAIIGRWKSFSSL 349
            F  +   Y +  N + A++A  V W  Y+RASEVL+L    V  P D  +++     AG+ I++ KT P QF  +  K  + +L +Y    S  P AR+    F  +Y  Y+   + A +  GL   R TSH ARIG AL D + G SAE+IAIIGRWK  SSL
Sbjct:    3 FNFSIVGYLLQSNQSQAAIARVVAWSGYLRASEVLNLTWALVALPGDPMLSYYPSETAGVCIKDTKTRPFQFVPISRKESVIVLAAYKR--STRPEARMQSKVFTLTYSAYHQQLQLACSILGLLDFRITSHLARIGRALHDFVAGKSAESIAIIGRWKDLSSL 164          
BLAST of Ggra9301.t1 vs. uniprot
Match: A0A1Q9EXH1 (Reverse transcriptase domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EXH1_SYMMI)

HSP 1 Score: 62.8 bits (151), Expect = 7.560e-7
Identity = 75/314 (23.89%), Postives = 128/314 (40.76%), Query Frame = 0
Query:   83 LKRYPLVSFTVSPRTERLYQNAYSVFRHSLRRIPASIEEL---DEFFADYVHESFYEDASPGHRQNVCYALAFMCLSRPSLRNGLGLSRRALEGWTKAVPPVPALPLTRSFMSAFAEYFISQNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIAGINIEN---YKTGPMQFTALRD-KHILGILQSYVENISQ---SPNARLFNFSYPRYNTLFKEAATYFGLEA-GRFTSHSARIGGALSDHLDG-SSAETIAIIGRWKSFSSLQRYLTNGRAALARMRTSSDSQRLIRECSKRFDGLL 384
            L R  L S + + R    YQ  +      L   P  ++++   +      + E F +  +    Q +  A+ F  LS  S  + +   +++L+GW K  PP   LP+    ++  A+   ++   S  + L + +  Y+R SE L LR RDV+ P   R   +        +E     KT     T   D K+  G+ ++    +     S N ++F       N     A     L+  G    +  R GGA  D+ +      ++   GRWKS +S++RY   GR A      S +++RL  + +    G L
Sbjct:  691 LTRLELASVSTACRAR--YQRLWEGVAPLLCSSPGVLKDMSTVETILCQQLEELFLDGCNLASGQYLIAAVIFFNLSLKS--HPMPRVKQSLQGWRKLAPPQARLPIPYEAVALMAQMAFAKGLISIGLFLLLAFALYLRPSEWLRLRKRDVIKPVQKRGTSSHWQFVLNPLEEGVPSKTQEFDETLQLDLKYHRGLGEAIHRCLGLDKLSSNQKIFQLESKDINDFMMLARVQLNLQPLGHLHLYRLRHGGASYDYNNHFRDLASVQQRGRWKSHNSVRRYQKGGRLAQLFAALSPETRRLATKAATGLQGTL 1000          
BLAST of Ggra9301.t1 vs. uniprot
Match: A0A1Q9D3P9 (Reverse transcriptase domain-containing protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D3P9_SYMMI)

HSP 1 Score: 62.8 bits (151), Expect = 7.670e-7
Identity = 75/314 (23.89%), Postives = 128/314 (40.76%), Query Frame = 0
Query:   83 LKRYPLVSFTVSPRTERLYQNAYSVFRHSLRRIPASIEEL---DEFFADYVHESFYEDASPGHRQNVCYALAFMCLSRPSLRNGLGLSRRALEGWTKAVPPVPALPLTRSFMSAFAEYFISQNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIAGINIEN---YKTGPMQFTALRD-KHILGILQSYVENISQ---SPNARLFNFSYPRYNTLFKEAATYFGLEA-GRFTSHSARIGGALSDHLDG-SSAETIAIIGRWKSFSSLQRYLTNGRAALARMRTSSDSQRLIRECSKRFDGLL 384
            L R  L S + + R    YQ  +      L   P  ++++   +      + E F +  +    Q +  A+ F  LS  S  + +   +++L+GW K  PP   LP+    ++  A+   ++   S  + L + +  Y+R SE L LR RDV+ P   R   +        +E     KT     T   D K+  G+ ++    +     S N ++F       N     A     L+  G    +  R GGA  D+ +      ++   GRWKS +S++RY   GR A      S +++RL  + +    G L
Sbjct:  691 LTRLELASVSTACRAR--YQRLWEGVAPLLCSSPGVLKDMSTVETILCQQLEELFLDGCNLASGQYLIAAVIFFNLSLKS--HPMPRVKQSLQGWRKLAPPQARLPIPYEAVALMAQMAFAKGLISIGLFLLLAFALYLRPSEGLRLRKRDVIKPVQKRGTSSHWQFVLNPLEEGVPSKTQEFDETLQLDLKYHRGLGEAIHRCLGLDKLSSNQKIFQLESKDINDFMMLARVQLNLQPLGHLHLYRLRHGGASYDYNNHFRDLASVQQRGRWKSHNSVRRYQKGGRLAQLFAALSPETRRLATKAATGLQGTL 1000          
BLAST of Ggra9301.t1 vs. uniprot
Match: A0A812HV45 (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812HV45_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 1.830e-6
Identity = 64/256 (25.00%), Postives = 102/256 (39.84%), Query Frame = 0
Query:  118 SIEELDEFFADYVHESFYEDASPGHRQNVCYALAFMCLSRPSLRNG----LGLSRRALEGWTKAVPPVPALPLTRSFMSAFAEYFISQNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIAGINIENY---KTGPMQFTALRD----KHILGILQSYVENISQSPNARLFNFSYPRYNTLFKEAATYFGLEA-GRFTSHSARIGGALSDHLDGSSAETIAII--GRWKSFSSLQRYLTNGRAA 359
            S+ ++D      + E F +  +    Q   Y +A      PSL++     L   ++AL GW +  PP   +P+    +   A +   +      + L + +  Y+R SE L +R +DVV P   R   +R       +E     KT     T   D     H+   +   +     +P   +F+ +    N     A     L   G    +  R GGA  D  +G   +  AI   GRWKSF+S++RY   GR A
Sbjct: 1582 SVSQIDNVLCQQLEEQFLDGLNVASGQ---YLVAAFLYFNPSLKSPSMQWLPRVKQALAGWKRLAPPQARMPIPYEVVVLMACHAFLKGLKEVGLFLLLAFALYLRPSEGLRIRSKDVVAPVQRRGTSSRWQFVLNPMEGQVPSKTKEFDETLALDLDYHAHLGQAIHRCLHLSRMNPGQFIFSITAKELNDFLASAQQELELRPLGPLHLYRLRHGGASHD-FNGKFRDLTAIQQRGRWKSFNSVRRYQKGGRVA 1833          
BLAST of Ggra9301.t1 vs. uniprot
Match: A0A813ADY2 (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813ADY2_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 2.130e-6
Identity = 75/317 (23.66%), Postives = 128/317 (40.38%), Query Frame = 0
Query:   80 ATYLKRYPLVSFTVSPRTERLYQNAYSVFRHSLRRIPASIEEL---DEFFADYVHESFYEDASPGHRQNVCYALAFMCLSRPSLRNGLGLSRRALEGWTKAVPPVPALPLTRSFMSAFAEYFISQNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIAGINIEN---YKTGPMQFTALRD-KHILGILQSYVENISQ---SPNARLFNFSYPRYNTLFKEAATYFGLEA-GRFTSHSARIGGALSDHLDG-SSAETIAIIGRWKSFSSLQRYLTNGRAALARMRTSSDSQRLIRECSKRFDGLL 384
            A  L R  L S + + R    YQ  +      L   P  ++++   +      + E F +  +    Q +  A+ F  LS  S  + +   +++L+GW K  PP   LP+    ++  A+   ++   S  + L + +  Y+R SE L LR RDV+ P   R   +        +E     KT     T   D K+  G+ ++    +     S N ++F       N     A     L+  G    +  R GGA  D+ +      ++   GRWKS + ++RY   GR A      S +++RL  + +    G L
Sbjct:  688 ALSLTRLELASVSTACRAR--YQRLWEGVAPLLCSSPGVLKDMSTIETILCQQLEELFLDGCNLASGQYLIAAVIFFNLSLKS--HPMPRVKQSLQGWRKLAPPQARLPIPYEAVALMAQMAFAKGLISIGLFLLLAFALYLRPSEGLRLRKRDVIKPVQKRGTSSHWQFVLNPLEEGVPSKTQEFDETLQLDLKYHRGLGEAIHRCLGLDKLSSNQKIFQLESKDINDFMMLARVQLNLQPLGHLHLYRLRHGGASYDYNNHFRDLASVQQRGRWKSHNGVRRYEKGGRLAQLFAALSPETRRLATKAATGLQGTL 1000          
BLAST of Ggra9301.t1 vs. uniprot
Match: A0A812L1D7 (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812L1D7_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 2.320e-6
Identity = 68/268 (25.37%), Postives = 111/268 (41.42%), Query Frame = 0
Query:  119 IEELDEFFADYVHESFYEDASPGHRQNVCYALAFMCLSRPSLRNG----LGLSRRALEGWTKAVPPVPALPLTRSFMSAFAEYFISQNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIA------GINIE-----------NYKTGPMQFTALR------DKHILGILQSYVENISQSPNARLFNFSYPRYNTLFKEAATYFGLEA-GRFTSHSARIGGALSDHLDG-SSAETIAIIGRWKSFSSLQRYLTNGR 357
            +  LD+  A+++ E  Y D          YA+A     RP LR+     L   +++L GW+K  PP   LP+  + ++  A + +S      ++ L + +  YMR SE L LR +DVV P+  +      ++       G+  E           +   GP  +  LR      ++HI  I    +EN++Q                  + A     L+  G    +  R GGA  D +       +I + GRW+S SS++RY   GR
Sbjct: 1257 LRPLDQALAEHL-EDLYRDGED--LATARYAVAAALFFRPELRSPAMTHLPKVKQSLAGWSKLCPPRSRLPIPYAVVALLALHALSLGLLEIAIYLLLTFSLYMRPSEGLRLRKKDVVRPSSRQAGFQHWSVVLHPLEVGVTQEFDECLQLDLPYHQPLGPATYKLLRLHQKRGEEHIFTIT---LENVTQ----------------FLERAQIELELKGLGELQPYRLRHGGASHDFVSKLRDLASIQMRGRWRSQSSVRRYQKGGR 1502          
The following BLAST results are available for this feature:
BLAST of Ggra9301.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J3T35.570e-4338.25Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3IZL94.840e-2339.63Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1Q9EXH17.560e-723.89Reverse transcriptase domain-containing protein n=... [more]
A0A1Q9D3P97.670e-723.89Reverse transcriptase domain-containing protein n=... [more]
A0A812HV451.830e-625.00Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A813ADY22.130e-623.66Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A812L1D72.320e-625.37Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 196..356
e-value: 4.1E-14
score: 54.7
IPR002104Integrase, catalytic domainPFAMPF00589Phage_integrasecoord: 197..354
e-value: 3.7E-7
score: 30.1
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 186..363

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000863_piloncontigtig00000863_pilon:212111..213307 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9301.t1Ggra9301.t1Gracilaria gracilis GNS1m malemRNAtig00000863_pilon 212111..213307 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9301.t1 ID=Ggra9301.t1|Name=Ggra9301.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MSSPISSSGPRAFVFRSARMQCDAQSPVLSASEAAFERQWKRSLLKRSGV
AKQQQFPTQRRTGVEVSSSTRSRQFILPNATYLKRYPLVSFTVSPRTERL
YQNAYSVFRHSLRRIPASIEELDEFFADYVHESFYEDASPGHRQNVCYAL
AFMCLSRPSLRNGLGLSRRALEGWTKAVPPVPALPLTRSFMSAFAEYFIS
QNCTSASVALCVQWCTYMRASEVLSLRVRDVVFPNDVRIAHTRKNIAGIN
IENYKTGPMQFTALRDKHILGILQSYVENISQSPNARLFNFSYPRYNTLF
KEAATYFGLEAGRFTSHSARIGGALSDHLDGSSAETIAIIGRWKSFSSLQ
RYLTNGRAALARMRTSSDSQRLIRECSKRFDGLLEQCVQYRQSANCRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR002104Integrase_catalytic
IPR011010DNA_brk_join_enz