Ggra10067.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10067.t1
Unique NameGgra10067.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:169397..170719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1463820.JOGW01000024_gene4857
PFAMsPI-PLC-X
Max annot lvl201174|Actinobacteria
KEGG rclassRC00017,RC00425
KEGG koko:K01771
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Evalue1.36e-47
EggNOG OGsCOG0823@1|root,COG0823@2|Bacteria,2GMN7@201174|Actinobacteria
EC4.6.1.13
DescriptionPhosphatidylinositol-specific phospholipase C, X domain
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10067Ggra10067Gracilaria gracilis GNS1m malegenetig00000862_pilon 169397..170719 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10067.t1.start1Ggra10067.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 169397..169399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10067.t1.CDS1Ggra10067.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 169397..170719 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10067.t1.exon1Ggra10067.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 169397..170719 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10067.t1.stop1Ggra10067.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 170717..170719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10067.t1Ggra10067.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 169397..170719 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10067.t1 ID=Ggra10067.t1|Name=Ggra10067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MIPDSSTDEKIGLVSGSTLLRRPRFSRRGVLLSFLVLTTLGCVVFLPWHR
RSESITHFRSSPNPIGVMDHSHLTVLDEDSKSEGTMTSSSSPASWLTSAT
VDWMEDIPDSKSVAHVSIPGTHDSGARFGGAACETQSWTIAKQLEAGLRF
FDIRCRVAGTVFSIHHGACFQNMFFGDVLIDVQNFLYSHPNEFVIMNIQE
EHKPMSGSSSFSSIWSTYKSNFNSLFVDSRTSLPTVGEVRGKVLLISKLS
LGKGIKWDSALTETQNIYKVYALLNNNPFGSSTASIGQKKELVRSYIDKA
ATSSKLVINFLSGAEGMIPKDVARSTNQNAYEHIGAYNGAKRVGVIIMDF
PGEKLVYRVIKTNFEATEYCESRTWRTQSGKTWAEFRMPRAVVGTSISIK
GGAYYKYKFPKCHRATWTDLRFVCSASTRTWGGCVRIMGC*
back to top

spliced messenger RNA

>Ggra10067.t1 ID=Ggra10067.t1|Name=Ggra10067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000862_pilon:169397..170719+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCCGGACAGTTCTACCGACGAGAAAATCGGTTTAGTGTCCGGCTC
TACTCTCCTTCGTCGCCCGAGATTCAGTAGACGTGGTGTGCTTCTTTCAT
TTCTCGTACTCACGACGCTTGGATGTGTTGTATTTTTACCATGGCATCGC
CGATCTGAGTCGATCACGCACTTCAGGTCTTCACCAAATCCTATCGGAGT
CATGGACCATTCTCACCTGACCGTGCTTGACGAGGATTCCAAGTCGGAAG
GAACCATGACATCATCGTCATCGCCCGCGTCATGGCTTACCAGCGCCACG
GTGGATTGGATGGAGGATATTCCAGACAGCAAATCCGTTGCCCATGTCTC
TATTCCTGGTACTCACGACTCTGGGGCGCGATTCGGTGGAGCAGCCTGTG
AGACGCAGTCGTGGACCATTGCGAAGCAGTTAGAGGCTGGACTCCGCTTC
TTTGACATAAGATGTCGAGTCGCTGGTACAGTGTTTTCCATACATCATGG
GGCATGCTTCCAAAACATGTTCTTCGGAGATGTTTTGATTGACGTGCAAA
ACTTTCTTTACTCCCACCCGAACGAATTCGTGATTATGAACATTCAGGAA
GAACACAAACCAATGAGCGGATCTTCTTCGTTCTCATCCATTTGGTCTAC
ATACAAGAGCAATTTCAACAGCCTATTCGTTGACTCGCGCACATCGCTAC
CAACTGTGGGAGAGGTTCGAGGAAAGGTGTTGCTGATCAGTAAGCTTTCA
TTGGGCAAAGGAATCAAGTGGGATAGCGCTCTGACCGAGACTCAGAACAT
CTACAAGGTTTACGCACTGTTGAATAACAATCCCTTCGGTTCGAGCACTG
CTTCTATTGGACAGAAGAAGGAGCTGGTGAGGTCATACATTGACAAAGCG
GCAACTTCGTCCAAACTCGTGATCAACTTCCTGTCGGGAGCTGAGGGTAT
GATCCCGAAGGACGTCGCACGCAGTACCAACCAAAATGCATACGAGCACA
TCGGGGCGTACAACGGCGCCAAACGCGTTGGAGTAATTATCATGGACTTC
CCTGGGGAGAAACTCGTGTATCGCGTTATCAAGACCAACTTTGAGGCCAC
CGAATATTGCGAGTCGAGAACGTGGCGCACGCAAAGCGGCAAGACATGGG
CTGAATTTCGCATGCCGCGAGCAGTTGTGGGAACCTCCATTAGCATTAAA
GGAGGCGCGTATTATAAGTACAAGTTCCCAAAATGCCATCGCGCGACTTG
GACGGATTTGCGCTTCGTGTGCAGCGCTTCCACCCGAACTTGGGGAGGTT
GCGTCCGGATCATGGGATGCTGA
back to top

protein sequence of Ggra10067.t1

>Ggra10067.t1 ID=Ggra10067.t1|Name=Ggra10067.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MIPDSSTDEKIGLVSGSTLLRRPRFSRRGVLLSFLVLTTLGCVVFLPWHR
RSESITHFRSSPNPIGVMDHSHLTVLDEDSKSEGTMTSSSSPASWLTSAT
VDWMEDIPDSKSVAHVSIPGTHDSGARFGGAACETQSWTIAKQLEAGLRF
FDIRCRVAGTVFSIHHGACFQNMFFGDVLIDVQNFLYSHPNEFVIMNIQE
EHKPMSGSSSFSSIWSTYKSNFNSLFVDSRTSLPTVGEVRGKVLLISKLS
LGKGIKWDSALTETQNIYKVYALLNNNPFGSSTASIGQKKELVRSYIDKA
ATSSKLVINFLSGAEGMIPKDVARSTNQNAYEHIGAYNGAKRVGVIIMDF
PGEKLVYRVIKTNFEATEYCESRTWRTQSGKTWAEFRMPRAVVGTSISIK
GGAYYKYKFPKCHRATWTDLRFVCSASTRTWGGCVRIMGC*
back to top

mRNA from alignment at tig00000862_pilon:169397..170719+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10067.t1 ID=Ggra10067.t1|Name=Ggra10067.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000862_pilon:169397..170719+ (Gracilaria gracilis GNS1m male)
ATGATCCCGGACAGTTCTACCGACGAGAAAATCGGTTTAGTGTCCGGCTC
TACTCTCCTTCGTCGCCCGAGATTCAGTAGACGTGGTGTGCTTCTTTCAT
TTCTCGTACTCACGACGCTTGGATGTGTTGTATTTTTACCATGGCATCGC
CGATCTGAGTCGATCACGCACTTCAGGTCTTCACCAAATCCTATCGGAGT
CATGGACCATTCTCACCTGACCGTGCTTGACGAGGATTCCAAGTCGGAAG
GAACCATGACATCATCGTCATCGCCCGCGTCATGGCTTACCAGCGCCACG
GTGGATTGGATGGAGGATATTCCAGACAGCAAATCCGTTGCCCATGTCTC
TATTCCTGGTACTCACGACTCTGGGGCGCGATTCGGTGGAGCAGCCTGTG
AGACGCAGTCGTGGACCATTGCGAAGCAGTTAGAGGCTGGACTCCGCTTC
TTTGACATAAGATGTCGAGTCGCTGGTACAGTGTTTTCCATACATCATGG
GGCATGCTTCCAAAACATGTTCTTCGGAGATGTTTTGATTGACGTGCAAA
ACTTTCTTTACTCCCACCCGAACGAATTCGTGATTATGAACATTCAGGAA
GAACACAAACCAATGAGCGGATCTTCTTCGTTCTCATCCATTTGGTCTAC
ATACAAGAGCAATTTCAACAGCCTATTCGTTGACTCGCGCACATCGCTAC
CAACTGTGGGAGAGGTTCGAGGAAAGGTGTTGCTGATCAGTAAGCTTTCA
TTGGGCAAAGGAATCAAGTGGGATAGCGCTCTGACCGAGACTCAGAACAT
CTACAAGGTTTACGCACTGTTGAATAACAATCCCTTCGGTTCGAGCACTG
CTTCTATTGGACAGAAGAAGGAGCTGGTGAGGTCATACATTGACAAAGCG
GCAACTTCGTCCAAACTCGTGATCAACTTCCTGTCGGGAGCTGAGGGTAT
GATCCCGAAGGACGTCGCACGCAGTACCAACCAAAATGCATACGAGCACA
TCGGGGCGTACAACGGCGCCAAACGCGTTGGAGTAATTATCATGGACTTC
CCTGGGGAGAAACTCGTGTATCGCGTTATCAAGACCAACTTTGAGGCCAC
CGAATATTGCGAGTCGAGAACGTGGCGCACGCAAAGCGGCAAGACATGGG
CTGAATTTCGCATGCCGCGAGCAGTTGTGGGAACCTCCATTAGCATTAAA
GGAGGCGCGTATTATAAGTACAAGTTCCCAAAATGCCATCGCGCGACTTG
GACGGATTTGCGCTTCGTGTGCAGCGCTTCCACCCGAACTTGGGGAGGTT
GCGTCCGGATCATGGGATGCTGA
back to top

Coding sequence (CDS) from alignment at tig00000862_pilon:169397..170719+

>Ggra10067.t1 ID=Ggra10067.t1|Name=Ggra10067.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000862_pilon:169397..170719+ (Gracilaria gracilis GNS1m male)
ATGATCCCGGACAGTTCTACCGACGAGAAAATCGGTTTAGTGTCCGGCTC
TACTCTCCTTCGTCGCCCGAGATTCAGTAGACGTGGTGTGCTTCTTTCAT
TTCTCGTACTCACGACGCTTGGATGTGTTGTATTTTTACCATGGCATCGC
CGATCTGAGTCGATCACGCACTTCAGGTCTTCACCAAATCCTATCGGAGT
CATGGACCATTCTCACCTGACCGTGCTTGACGAGGATTCCAAGTCGGAAG
GAACCATGACATCATCGTCATCGCCCGCGTCATGGCTTACCAGCGCCACG
GTGGATTGGATGGAGGATATTCCAGACAGCAAATCCGTTGCCCATGTCTC
TATTCCTGGTACTCACGACTCTGGGGCGCGATTCGGTGGAGCAGCCTGTG
AGACGCAGTCGTGGACCATTGCGAAGCAGTTAGAGGCTGGACTCCGCTTC
TTTGACATAAGATGTCGAGTCGCTGGTACAGTGTTTTCCATACATCATGG
GGCATGCTTCCAAAACATGTTCTTCGGAGATGTTTTGATTGACGTGCAAA
ACTTTCTTTACTCCCACCCGAACGAATTCGTGATTATGAACATTCAGGAA
GAACACAAACCAATGAGCGGATCTTCTTCGTTCTCATCCATTTGGTCTAC
ATACAAGAGCAATTTCAACAGCCTATTCGTTGACTCGCGCACATCGCTAC
CAACTGTGGGAGAGGTTCGAGGAAAGGTGTTGCTGATCAGTAAGCTTTCA
TTGGGCAAAGGAATCAAGTGGGATAGCGCTCTGACCGAGACTCAGAACAT
CTACAAGGTTTACGCACTGTTGAATAACAATCCCTTCGGTTCGAGCACTG
CTTCTATTGGACAGAAGAAGGAGCTGGTGAGGTCATACATTGACAAAGCG
GCAACTTCGTCCAAACTCGTGATCAACTTCCTGTCGGGAGCTGAGGGTAT
GATCCCGAAGGACGTCGCACGCAGTACCAACCAAAATGCATACGAGCACA
TCGGGGCGTACAACGGCGCCAAACGCGTTGGAGTAATTATCATGGACTTC
CCTGGGGAGAAACTCGTGTATCGCGTTATCAAGACCAACTTTGAGGCCAC
CGAATATTGCGAGTCGAGAACGTGGCGCACGCAAAGCGGCAAGACATGGG
CTGAATTTCGCATGCCGCGAGCAGTTGTGGGAACCTCCATTAGCATTAAA
GGAGGCGCGTATTATAAGTACAAGTTCCCAAAATGCCATCGCGCGACTTG
GACGGATTTGCGCTTCGTGTGCAGCGCTTCCACCCGAACTTGGGGAGGTT
GCGTCCGGATCATGGGATGCTGA
back to top