Ggra10059.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10059.t1
Unique NameGgra10059.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:36058..37358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10059Ggra10059Gracilaria gracilis GNS1m malegenetig00000862_pilon 36058..37358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10059.t1Ggra10059.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 36058..37358 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10059.t1.stop1Ggra10059.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 36058..36060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10059.t1.CDS1Ggra10059.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 36058..36266 -
Ggra10059.t1.CDS2Ggra10059.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 36455..37358 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10059.t1.exon1Ggra10059.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 36058..36266 -
Ggra10059.t1.exon2Ggra10059.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 36455..37358 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10059.t1.intron1Ggra10059.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 36267..36454 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10059.t1.start1Ggra10059.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 37356..37358 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10059.t1 ID=Ggra10059.t1|Name=Ggra10059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=371bp
MQGFHDLRRVLPMFTSRVPRGAIILTVLVASVVVFFSNRTPVALNHSNGF
HGLPNPSRSLLERITSLSLPWNTRDLRRMPNPSQNRYWQLHGVTNSRSQA
FPIWSHTGSTCGASIKDFVEDQRVATGDCNGGRLCRARMVVSKQGTGAII
QVGYNIFYNRGVIAVNSRTKQRVKAVTRAEANNWAKALLKKIGPSVEAVN
CKVTVSMISDALMQSKNDAARCPRTDDPLCTQLKTVNSCKVFEYSSETEQ
EKECREFVESGVSISDFEDLEVKSPCAGVKGDANIVYMTVPLCTTTCAAS
ACEFWEGKFFDFAVEYLVAYRTAHEEYPYIIPKHLQDIAAENYGGFIYDL
RYELLELPADHIESQCSLVG*
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spliced messenger RNA

>Ggra10059.t1 ID=Ggra10059.t1|Name=Ggra10059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000862_pilon:36058..37358- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGGCTTTCATGACCTTCGTCGTGTCTTGCCGATGTTCACCTCTCG
TGTTCCCCGTGGAGCAATTATTCTCACAGTATTGGTTGCATCTGTTGTGG
TCTTCTTCTCGAATCGCACCCCAGTTGCTCTCAATCATTCGAATGGGTTT
CATGGATTGCCCAATCCCTCTCGATCGTTGCTGGAGAGGATTACTTCCCT
CTCCTTGCCTTGGAACACTAGGGATTTGCGCCGAATGCCAAACCCATCTC
AAAATCGTTACTGGCAACTCCATGGCGTTACCAATTCTCGCTCACAGGCT
TTCCCCATCTGGTCCCACACCGGATCGACATGTGGGGCTTCGATAAAAGA
TTTTGTCGAGGACCAAAGAGTCGCAACTGGAGACTGTAATGGCGGAAGAC
TATGCAGAGCACGTATGGTCGTATCAAAACAAGGAACCGGTGCAATCATT
CAAGTCGGATACAACATCTTCTACAACAGGGGAGTGATTGCTGTCAATTC
ACGGACCAAACAACGTGTAAAAGCAGTGACGCGAGCAGAAGCCAACAACT
GGGCTAAAGCATTGTTGAAGAAGATTGGACCCAGTGTAGAAGCTGTGAAC
TGCAAAGTGACCGTGTCCATGATTTCTGATGCTTTGATGCAGTCCAAGAA
TGATGCCGCGAGATGTCCGAGAACAGACGATCCTCTCTGTACTCAATTGA
AGACCGTCAACTCCTGCAAAGTGTTTGAATACTCTTCGGAAACCGAGCAG
GAGAAAGAGTGTCGTGAATTCGTGGAATCTGGAGTCTCCATATCTGATTT
TGAAGACCTGGAAGTTAAATCGCCGTGTGCCGGCGTCAAGGGCGATGCAA
ATATCGTGTACATGACAGTTCCGCTCTGCACGACTACTTGTGCCGCAAGT
GCATGTGAGTTCTGGGAGGGTAAGTTCTTTGATTTTGCGGTTGAATATTT
GGTTGCCTATAGGACAGCCCATGAAGAATATCCATATATTATTCCCAAAC
ATTTGCAAGATATCGCCGCTGAGAATTACGGGGGTTTCATTTACGACTTA
AGGTACGAACTCCTTGAGCTTCCTGCGGATCACATTGAGTCGCAGTGCAG
CCTTGTAGGATAG
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protein sequence of Ggra10059.t1

>Ggra10059.t1 ID=Ggra10059.t1|Name=Ggra10059.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MQGFHDLRRVLPMFTSRVPRGAIILTVLVASVVVFFSNRTPVALNHSNGF
HGLPNPSRSLLERITSLSLPWNTRDLRRMPNPSQNRYWQLHGVTNSRSQA
FPIWSHTGSTCGASIKDFVEDQRVATGDCNGGRLCRARMVVSKQGTGAII
QVGYNIFYNRGVIAVNSRTKQRVKAVTRAEANNWAKALLKKIGPSVEAVN
CKVTVSMISDALMQSKNDAARCPRTDDPLCTQLKTVNSCKVFEYSSETEQ
EKECREFVESGVSISDFEDLEVKSPCAGVKGDANIVYMTVPLCTTTCAAS
ACEFWEGKFFDFAVEYLVAYRTAHEEYPYIIPKHLQDIAAENYGGFIYDL
RYELLELPADHIESQCSLVG*
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mRNA from alignment at tig00000862_pilon:36058..37358-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10059.t1 ID=Ggra10059.t1|Name=Ggra10059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1301bp|location=Sequence derived from alignment at tig00000862_pilon:36058..37358- (Gracilaria gracilis GNS1m male)
ATGCAAGGCTTTCATGACCTTCGTCGTGTCTTGCCGATGTTCACCTCTCG
TGTTCCCCGTGGAGCAATTATTCTCACAGTATTGGTTGCATCTGTTGTGG
TCTTCTTCTCGAATCGCACCCCAGTTGCTCTCAATCATTCGAATGGGTTT
CATGGATTGCCCAATCCCTCTCGATCGTTGCTGGAGAGGATTACTTCCCT
CTCCTTGCCTTGGAACACTAGGGATTTGCGCCGAATGCCAAACCCATCTC
AAAATCGTTACTGGCAACTCCATGGCGTTACCAATTCTCGCTCACAGGCT
TTCCCCATCTGGTCCCACACCGGATCGACATGTGGGGCTTCGATAAAAGA
TTTTGTCGAGGACCAAAGAGTCGCAACTGGAGACTGTAATGGCGGAAGAC
TATGCAGAGCACGTATGGTCGTATCAAAACAAGGAACCGGTGCAATCATT
CAAGTCGGATACAACATCTTCTACAACAGGGGAGTGATTGCTGTCAATTC
ACGGACCAAACAACGTGTAAAAGCAGTGACGCGAGCAGAAGCCAACAACT
GGGCTAAAGCATTGTTGAAGAAGATTGGACCCAGTGTAGAAGCTGTGAAC
TGCAAAGTGACCGTGTCCATGATTTCTGATGCTTTGATGCAGTCCAAGAA
TGATGCCGCGAGATGTCCGAGAACAGACGATCCTCTCTGTACTCAATTGA
AGACCGTCAACTCCTGCAAAGTGTTTGAATACTCTTCGGAAACCGAGCAG
GAGAAAGAGTGTCGTGAATTCGTGGAATCTGGAGTCTCCATATCTGATTT
TGAAGACCTGGAAGTTAAATCGCCGTGTGCCGGCGTCAAGGGCGATGCAA
ATATCGTGTACATGACAGTTCCGCTCTGCACGACTACTTGTGCCGCAAGT
GCATGTCCGCATGAAGAAAGAACTATATTCGCGAATATGTCTGTTCGTGG
AAACCTTCTAAAAAACGGTATGATGGGACCGATATAACAAAAACACAGAA
TTCTATGGCTTCTGTTTATTTGGCAGCGTACAATACTTTGATCGCGAACA
ACATTCCAAGCTGCAACAACATGCCTTACGGTGTGCTCAAAGGTGAGTTC
TGGGAGGGTAAGTTCTTTGATTTTGCGGTTGAATATTTGGTTGCCTATAG
GACAGCCCATGAAGAATATCCATATATTATTCCCAAACATTTGCAAGATA
TCGCCGCTGAGAATTACGGGGGTTTCATTTACGACTTAAGGTACGAACTC
CTTGAGCTTCCTGCGGATCACATTGAGTCGCAGTGCAGCCTTGTAGGATA
G
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Coding sequence (CDS) from alignment at tig00000862_pilon:36058..37358-

>Ggra10059.t1 ID=Ggra10059.t1|Name=Ggra10059.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000862_pilon:36058..37358- (Gracilaria gracilis GNS1m male)
ATGCAAGGCTTTCATGACCTTCGTCGTGTCTTGCCGATGTTCACCTCTCG
TGTTCCCCGTGGAGCAATTATTCTCACAGTATTGGTTGCATCTGTTGTGG
TCTTCTTCTCGAATCGCACCCCAGTTGCTCTCAATCATTCGAATGGGTTT
CATGGATTGCCCAATCCCTCTCGATCGTTGCTGGAGAGGATTACTTCCCT
CTCCTTGCCTTGGAACACTAGGGATTTGCGCCGAATGCCAAACCCATCTC
AAAATCGTTACTGGCAACTCCATGGCGTTACCAATTCTCGCTCACAGGCT
TTCCCCATCTGGTCCCACACCGGATCGACATGTGGGGCTTCGATAAAAGA
TTTTGTCGAGGACCAAAGAGTCGCAACTGGAGACTGTAATGGCGGAAGAC
TATGCAGAGCACGTATGGTCGTATCAAAACAAGGAACCGGTGCAATCATT
CAAGTCGGATACAACATCTTCTACAACAGGGGAGTGATTGCTGTCAATTC
ACGGACCAAACAACGTGTAAAAGCAGTGACGCGAGCAGAAGCCAACAACT
GGGCTAAAGCATTGTTGAAGAAGATTGGACCCAGTGTAGAAGCTGTGAAC
TGCAAAGTGACCGTGTCCATGATTTCTGATGCTTTGATGCAGTCCAAGAA
TGATGCCGCGAGATGTCCGAGAACAGACGATCCTCTCTGTACTCAATTGA
AGACCGTCAACTCCTGCAAAGTGTTTGAATACTCTTCGGAAACCGAGCAG
GAGAAAGAGTGTCGTGAATTCGTGGAATCTGGAGTCTCCATATCTGATTT
TGAAGACCTGGAAGTTAAATCGCCGTGTGCCGGCGTCAAGGGCGATGCAA
ATATCGTGTACATGACAGTTCCGCTCTGCACGACTACTTGTGCCGCAAGT
GCATGTGAGTTCTGGGAGGGTAAGTTCTTTGATTTTGCGGTTGAATATTT
GGTTGCCTATAGGACAGCCCATGAAGAATATCCATATATTATTCCCAAAC
ATTTGCAAGATATCGCCGCTGAGAATTACGGGGGTTTCATTTACGACTTA
AGGTACGAACTCCTTGAGCTTCCTGCGGATCACATTGAGTCGCAGTGCAG
CCTTGTAGGATAG
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