Ggra10060.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10060.t1
Unique NameGgra10060.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:52703..53392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10060Ggra10060Gracilaria gracilis GNS1m malegenetig00000862_pilon 52703..53392 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10060.t1.start1Ggra10060.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 52703..52705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10060.t1.CDS1Ggra10060.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 52703..53392 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10060.t1.exon1Ggra10060.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 52703..53392 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10060.t1.stop1Ggra10060.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 53390..53392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10060.t1Ggra10060.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 52703..53392 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10060.t1 ID=Ggra10060.t1|Name=Ggra10060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MLKKPHLRLLKRDDHAMTNGELLYTKKRITEVANSLKGLPNVSDDTSTPP
PKGLNILKPSPRCRLNLDDAVTVMKNLSFTLGNSSPHINKADLKNIVGEE
VQTALYAMSQKAEGSVFSHIGKRAPKPQSSTSMPRYSRKRTAGSKRKDES
PFCFDFGYPSHLAGNNACTSPSFLTKKRKMERQGQNHNSSQDNKTVTHPY
INKVATGKDNSDRPSDFHSGAGPYKRNHA*
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spliced messenger RNA

>Ggra10060.t1 ID=Ggra10060.t1|Name=Ggra10060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000862_pilon:52703..53392+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAAGAAGCCCCATCTACGCCTTCTCAAGCGTGATGATCATGCTAT
GACCAATGGAGAGCTACTGTATACGAAGAAAAGAATCACCGAAGTAGCAA
ACTCACTTAAAGGTCTACCAAACGTCAGCGATGACACCAGCACTCCACCT
CCTAAAGGCCTCAACATCCTCAAGCCATCGCCGCGCTGTCGTCTCAATTT
GGATGACGCCGTCACTGTCATGAAAAACCTCTCGTTCACGCTTGGAAACT
CTTCCCCTCATATCAACAAGGCTGACTTGAAAAACATCGTAGGTGAAGAG
GTGCAGACAGCCCTCTACGCGATGTCTCAGAAGGCCGAGGGGAGTGTGTT
CTCCCATATTGGCAAAAGAGCTCCCAAGCCTCAGTCATCAACCTCAATGC
CCCGCTATTCCCGCAAAAGGACGGCTGGCTCGAAGAGGAAGGATGAATCG
CCGTTTTGTTTCGATTTTGGTTATCCGTCTCACCTGGCTGGTAATAACGC
TTGCACCTCTCCATCTTTTCTCACGAAGAAAAGGAAAATGGAGCGCCAGG
GACAGAACCACAACTCTTCTCAGGACAACAAGACCGTTACTCACCCGTAC
ATCAACAAAGTAGCGACTGGAAAGGATAACAGTGACCGCCCTTCGGATTT
TCACTCAGGCGCTGGCCCATACAAACGCAATCATGCCTAG
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protein sequence of Ggra10060.t1

>Ggra10060.t1 ID=Ggra10060.t1|Name=Ggra10060.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MLKKPHLRLLKRDDHAMTNGELLYTKKRITEVANSLKGLPNVSDDTSTPP
PKGLNILKPSPRCRLNLDDAVTVMKNLSFTLGNSSPHINKADLKNIVGEE
VQTALYAMSQKAEGSVFSHIGKRAPKPQSSTSMPRYSRKRTAGSKRKDES
PFCFDFGYPSHLAGNNACTSPSFLTKKRKMERQGQNHNSSQDNKTVTHPY
INKVATGKDNSDRPSDFHSGAGPYKRNHA*
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mRNA from alignment at tig00000862_pilon:52703..53392+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10060.t1 ID=Ggra10060.t1|Name=Ggra10060.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000862_pilon:52703..53392+ (Gracilaria gracilis GNS1m male)
ATGTTGAAGAAGCCCCATCTACGCCTTCTCAAGCGTGATGATCATGCTAT
GACCAATGGAGAGCTACTGTATACGAAGAAAAGAATCACCGAAGTAGCAA
ACTCACTTAAAGGTCTACCAAACGTCAGCGATGACACCAGCACTCCACCT
CCTAAAGGCCTCAACATCCTCAAGCCATCGCCGCGCTGTCGTCTCAATTT
GGATGACGCCGTCACTGTCATGAAAAACCTCTCGTTCACGCTTGGAAACT
CTTCCCCTCATATCAACAAGGCTGACTTGAAAAACATCGTAGGTGAAGAG
GTGCAGACAGCCCTCTACGCGATGTCTCAGAAGGCCGAGGGGAGTGTGTT
CTCCCATATTGGCAAAAGAGCTCCCAAGCCTCAGTCATCAACCTCAATGC
CCCGCTATTCCCGCAAAAGGACGGCTGGCTCGAAGAGGAAGGATGAATCG
CCGTTTTGTTTCGATTTTGGTTATCCGTCTCACCTGGCTGGTAATAACGC
TTGCACCTCTCCATCTTTTCTCACGAAGAAAAGGAAAATGGAGCGCCAGG
GACAGAACCACAACTCTTCTCAGGACAACAAGACCGTTACTCACCCGTAC
ATCAACAAAGTAGCGACTGGAAAGGATAACAGTGACCGCCCTTCGGATTT
TCACTCAGGCGCTGGCCCATACAAACGCAATCATGCCTAG
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Coding sequence (CDS) from alignment at tig00000862_pilon:52703..53392+

>Ggra10060.t1 ID=Ggra10060.t1|Name=Ggra10060.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000862_pilon:52703..53392+ (Gracilaria gracilis GNS1m male)
ATGTTGAAGAAGCCCCATCTACGCCTTCTCAAGCGTGATGATCATGCTAT
GACCAATGGAGAGCTACTGTATACGAAGAAAAGAATCACCGAAGTAGCAA
ACTCACTTAAAGGTCTACCAAACGTCAGCGATGACACCAGCACTCCACCT
CCTAAAGGCCTCAACATCCTCAAGCCATCGCCGCGCTGTCGTCTCAATTT
GGATGACGCCGTCACTGTCATGAAAAACCTCTCGTTCACGCTTGGAAACT
CTTCCCCTCATATCAACAAGGCTGACTTGAAAAACATCGTAGGTGAAGAG
GTGCAGACAGCCCTCTACGCGATGTCTCAGAAGGCCGAGGGGAGTGTGTT
CTCCCATATTGGCAAAAGAGCTCCCAAGCCTCAGTCATCAACCTCAATGC
CCCGCTATTCCCGCAAAAGGACGGCTGGCTCGAAGAGGAAGGATGAATCG
CCGTTTTGTTTCGATTTTGGTTATCCGTCTCACCTGGCTGGTAATAACGC
TTGCACCTCTCCATCTTTTCTCACGAAGAAAAGGAAAATGGAGCGCCAGG
GACAGAACCACAACTCTTCTCAGGACAACAAGACCGTTACTCACCCGTAC
ATCAACAAAGTAGCGACTGGAAAGGATAACAGTGACCGCCCTTCGGATTT
TCACTCAGGCGCTGGCCCATACAAACGCAATCATGCCTAG
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