Ggra10070.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10070.t1
Unique NameGgra10070.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000862_piloncontigtig00000862_pilon:239615..242788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10070Ggra10070Gracilaria gracilis GNS1m malegenetig00000862_pilon 239615..242788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10070.t1Ggra10070.t1Gracilaria gracilis GNS1m malepolypeptidetig00000862_pilon 239615..242788 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10070.t1.start1Ggra10070.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000862_pilon 239615..239617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10070.t1.CDS1Ggra10070.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000862_pilon 239615..240461 +
Ggra10070.t1.CDS2Ggra10070.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000862_pilon 242403..242788 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10070.t1.exon1Ggra10070.t1.exon1Gracilaria gracilis GNS1m maleexontig00000862_pilon 239615..240461 +
Ggra10070.t1.exon2Ggra10070.t1.exon2Gracilaria gracilis GNS1m maleexontig00000862_pilon 242403..242788 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10070.t1.intron1Ggra10070.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000862_pilon 240462..242402 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10070.t1.stop1Ggra10070.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000862_pilon 242786..242788 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10070.t1 ID=Ggra10070.t1|Name=Ggra10070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp
MPHSDQIESGPGNEIPMSYANVEQISIPRLCDANHATLQALYNSAPNHIK
EKHPNIPRAVYKMLAIIINWREDLTHEKLPHSFGDDEDKLKMQKMFSLSA
EELEEMAASQLPDLVEMVEACLRADAKLFPRDFNPVEPISVVYLVIRWQL
MATRAALQRRTIIEERSHYLTPIEDIQPPRSKRTNPFAHRTDLERGSKKK
RVLEVAGIPTGDDEDENQDFLTRLGGAAPIRPSQLKAYPGRTTVLLNATE
LMGSSILHSFCQKGINIELVIRNIRWPRQADGPRIDPEYFVMHHLKEILQ
LSGNLALALHVVDDIYFVFVNWNKKDVARLQYFVEEELSRNFLPVKREKS
SPIGNVETVRMPFIGWIWYLKHGVIRPKPGKIESAIRFVLATTEAAASEA
VIRSTVGKRV*
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spliced messenger RNA

>Ggra10070.t1 ID=Ggra10070.t1|Name=Ggra10070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1233bp|location=Sequence derived from alignment at tig00000862_pilon:239615..242788+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCATTCCGATCAGATTGAGTCAGGCCCTGGCAATGAAATACCCAT
GTCGTACGCGAACGTGGAGCAAATATCGATACCTCGACTCTGTGACGCTA
ACCATGCCACTCTCCAAGCGTTGTACAATTCTGCGCCGAATCACATCAAA
GAGAAGCACCCCAACATCCCACGAGCTGTTTATAAGATGCTTGCTATAAT
AATCAATTGGCGCGAAGATTTAACTCATGAAAAGCTCCCGCACTCGTTTG
GCGACGACGAAGACAAATTGAAAATGCAGAAGATGTTTTCATTATCAGCG
GAAGAGCTCGAGGAAATGGCCGCATCACAGCTTCCAGATCTTGTGGAAAT
GGTTGAAGCATGCTTGCGAGCTGACGCGAAACTCTTTCCGAGAGATTTCA
ATCCTGTTGAGCCAATTTCTGTCGTCTATTTGGTGATTAGATGGCAACTC
ATGGCCACCCGTGCCGCGCTGCAGCGAAGAACTATTATAGAGGAAAGGAG
CCATTACCTAACTCCTATCGAAGACATTCAGCCACCAAGAAGCAAAAGGA
CAAATCCATTCGCCCACAGGACAGACCTCGAAAGAGGGAGCAAGAAGAAG
AGAGTCTTAGAGGTTGCCGGGATTCCAACCGGTGACGATGAAGATGAGAA
TCAGGATTTTTTGACAAGGCTTGGGGGAGCAGCGCCCATCCGTCCAAGCC
AGTTAAAAGCATATCCAGGGCGCACAACAGTTCTTTTGAATGCTACAGAG
CTTATGGGATCCTCAATTCTGCATTCGTTTTGTCAGAAAGGAATAAATAT
CGAACTCGTGATTCGGAACATCAGATGGCCCAGACAGGCAGACGGCCCCC
GTATTGATCCCGAATACTTCGTAATGCATCACCTCAAAGAAATACTTCAA
CTTTCCGGAAATCTAGCACTTGCTCTGCACGTCGTCGATGATATTTACTT
TGTGTTCGTGAACTGGAATAAGAAAGATGTTGCCCGACTGCAGTACTTTG
TAGAGGAAGAATTATCGCGGAATTTTCTTCCGGTGAAAAGAGAGAAATCG
TCCCCCATCGGAAACGTCGAGACGGTCCGAATGCCCTTTATTGGATGGAT
ATGGTACCTTAAGCATGGCGTAATACGACCCAAACCAGGAAAGATCGAAT
CTGCCATCAGGTTCGTGCTTGCCACAACCGAAGCTGCCGCCTCAGAAGCT
GTCATAAGATCCACCGTTGGAAAACGGGTCTAG
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protein sequence of Ggra10070.t1

>Ggra10070.t1 ID=Ggra10070.t1|Name=Ggra10070.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=411bp
MPHSDQIESGPGNEIPMSYANVEQISIPRLCDANHATLQALYNSAPNHIK
EKHPNIPRAVYKMLAIIINWREDLTHEKLPHSFGDDEDKLKMQKMFSLSA
EELEEMAASQLPDLVEMVEACLRADAKLFPRDFNPVEPISVVYLVIRWQL
MATRAALQRRTIIEERSHYLTPIEDIQPPRSKRTNPFAHRTDLERGSKKK
RVLEVAGIPTGDDEDENQDFLTRLGGAAPIRPSQLKAYPGRTTVLLNATE
LMGSSILHSFCQKGINIELVIRNIRWPRQADGPRIDPEYFVMHHLKEILQ
LSGNLALALHVVDDIYFVFVNWNKKDVARLQYFVEEELSRNFLPVKREKS
SPIGNVETVRMPFIGWIWYLKHGVIRPKPGKIESAIRFVLATTEAAASEA
VIRSTVGKRV*
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mRNA from alignment at tig00000862_pilon:239615..242788+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10070.t1 ID=Ggra10070.t1|Name=Ggra10070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3174bp|location=Sequence derived from alignment at tig00000862_pilon:239615..242788+ (Gracilaria gracilis GNS1m male)
ATGCCGCATTCCGATCAGATTGAGTCAGGCCCTGGCAATGAAATACCCAT
GTCGTACGCGAACGTGGAGCAAATATCGATACCTCGACTCTGTGACGCTA
ACCATGCCACTCTCCAAGCGTTGTACAATTCTGCGCCGAATCACATCAAA
GAGAAGCACCCCAACATCCCACGAGCTGTTTATAAGATGCTTGCTATAAT
AATCAATTGGCGCGAAGATTTAACTCATGAAAAGCTCCCGCACTCGTTTG
GCGACGACGAAGACAAATTGAAAATGCAGAAGATGTTTTCATTATCAGCG
GAAGAGCTCGAGGAAATGGCCGCATCACAGCTTCCAGATCTTGTGGAAAT
GGTTGAAGCATGCTTGCGAGCTGACGCGAAACTCTTTCCGAGAGATTTCA
ATCCTGTTGAGCCAATTTCTGTCGTCTATTTGGTGATTAGATGGCAACTC
ATGGCCACCCGTGCCGCGCTGCAGCGAAGAACTATTATAGAGGAAAGGAG
CCATTACCTAACTCCTATCGAAGACATTCAGCCACCAAGAAGCAAAAGGA
CAAATCCATTCGCCCACAGGACAGACCTCGAAAGAGGGAGCAAGAAGAAG
AGAGTCTTAGAGGTTGCCGGGATTCCAACCGGTGACGATGAAGATGAGAA
TCAGGATTTTTTGACAAGGCTTGGGGGAGCAGCGCCCATCCGTCCAAGCC
AGTTAAAAGCATATCCAGGGCGCACAACAGTTCTTTTGAATGCTACAGAG
CTTATGGGATCCTCAATTCTGCATTCGTTTTGTCAGAAAGGAATAAATAT
CGAACTCGTGATTCGGAACATCAGATGGCCCAGACAGGCAGACGGCCGTC
CCTTCATGTCAGAGGTAGAGGCAATAACCCTGTCCAGATGTCTTCACTTT
CATCTCTGCCAATTTTCGACCATGGATCAAGCCCTCGTTACTGCTTCTTt
gtgcgcttgtgtggttgcaatgcgcaagggaagttgtgagtgttgaggtt
cgatgcctctgattttactgaagaggcagagatgtggtgtctCTGCCAAT
TTTCGACCATGGATCAAGCCCTCGTGACTGCTCCTTtgtgcgcttgtgtg
gttgcaatgcgcaaggaaagttgtgagtgttgaggttcgatgcctctgat
tttactgaagaggcagagatgtggtgtcttcagtacaccactactgatgt
tttctgcttcagaaaactactacagtacactagctaggtaggaaataatg
ccacccgagcgggggtgcagcaatccttggtggagctatgggtgctgaag
tggatgtctatatctacttcatgccaaagtggatgccttcatccactaca
TCCTTGGATTGAGATCGCACTATGTTGACTGTGGGCACTTATTGAAGTAG
AAAACCTAACATCAGGCCCTTGTACGTTGACAAAAGAAGAAGCATGGCAG
CGGATCCTCCCGTCTCTACAAGTGTATCCGGATGTGGGAATTCGTGTTCC
AGCGATGAGAACATTGGTAAATCGGCATATCTCAGCGGCGTCGCGAGCAA
GGAATGCCGTTCAAAGCCTGGCAAGCCGTTCCAACTTTCAGACGCAGAGA
CCACGATAAGGAAGACACGGCCAGTGCTCAGGTGCTTCGAACAAGATGCA
ATCGTGAGTTCTCAGAGGGCTCGAACCTTCCCGCTATCCGCAACACCTGA
AGCAGATTACCGAGAAACAGAGAAGGGCATGGTGTCAAGAATAGTCCTAT
CCTTGGACTTTCTTTATCTTGGTAAAGGCAGCTCTGTGAAACACACTGGC
ATGTCTCGACATCCTTCTTTACGAGCTCTCAAGTCTATCATAAAGCGTGA
TATGGAGGGACGCTTAGACCTTGGATAAGAGAGTTTCCAAACTATCTCAA
TCACTGCGAAGCAGTTGCCTCTACCCGGGTCAACAGCGTGCAATGGTCTT
CCCGAGGAGAAAAAATGTCCGCGAATGCCCTCTCAGTTCATCGAGCACTT
GCAGAAAGCCAGAGTGCTCAAGGAAAGAGGCGACTTCACACTATCACGTG
CTGATCGGATTGAACTCCCTTCCCCGGTGAACTCGAACCCCAACTCATGG
CTTTAAAAGATGCCAAACTCCGTTCAAGCACTTTTTAGTGCTTCTGGAGT
TCATGAACTAGCGGCTCCTATTAACAGTGTTTTGAAGAGTCAAGCGCAGT
TTCCCCGACCCCGAGTGCATGCCATGCCAGGCCAGTATCGTCAAACTTTG
CTTCGAATGCAcaatgccggtatgctcttgtggtcagtggttaatcaaga
gagtgcagagtattccaacctcgcgaacgccttgacaatgaccacgtttg
ccgtcgtggaggacccagcaagagacaggctaattagtttgccgcgtgtg
cagaatctcggcatgccagaccctccccatgtatgtcttccgaacccagg
gaatttctcaacacttcacatgccttctactgcagttcgactttcatgct
tctaccttgacgtggcaaataagtttcataacgtccgtctacctgacgct
ttagcagcattattctcactccgtacgatcgtatttggagacctcccacc
ggatttgcagcggtctcccgaagcacaagtaagatacagacctcaacaaa
ggcaaactttttggcctttgcagtgcacgctccccatggggttcaaatgg
tccgtctacattgctcagaccttcgtggaagcatgttatGCTAACGCATT
CAAGAGATTCTAGCACTACTCGTCAACGTTTGTAGCAGCCCGTATTGATC
CCGAATACTTCGTAATGCATCACCTCAAAGAAATACTTCAACTTTCCGGA
AATCTAGCACTTGCTCTGCACGTCGTCGATGATATTTACTTTGTGTTCGT
GAACTGGAATAAGAAAGATGTTGCCCGACTGCAGTACTTTGTAGAGGAAG
AATTATCGCGGAATTTTCTTCCGGTGAAAAGAGAGAAATCGTCCCCCATC
GGAAACGTCGAGACGGTCCGAATGCCCTTTATTGGATGGATATGGTACCT
TAAGCATGGCGTAATACGACCCAAACCAGGAAAGATCGAATCTGCCATCA
GGTTCGTGCTTGCCACAACCGAAGCTGCCGCCTCAGAAGCTGTCATAAGA
TCCACCGTTGGAAAACGGGTCTAG
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Coding sequence (CDS) from alignment at tig00000862_pilon:239615..242788+

>Ggra10070.t1 ID=Ggra10070.t1|Name=Ggra10070.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1233bp|location=Sequence derived from alignment at tig00000862_pilon:239615..242788+ (Gracilaria gracilis GNS1m male)
ATGCCGCATTCCGATCAGATTGAGTCAGGCCCTGGCAATGAAATACCCAT
GTCGTACGCGAACGTGGAGCAAATATCGATACCTCGACTCTGTGACGCTA
ACCATGCCACTCTCCAAGCGTTGTACAATTCTGCGCCGAATCACATCAAA
GAGAAGCACCCCAACATCCCACGAGCTGTTTATAAGATGCTTGCTATAAT
AATCAATTGGCGCGAAGATTTAACTCATGAAAAGCTCCCGCACTCGTTTG
GCGACGACGAAGACAAATTGAAAATGCAGAAGATGTTTTCATTATCAGCG
GAAGAGCTCGAGGAAATGGCCGCATCACAGCTTCCAGATCTTGTGGAAAT
GGTTGAAGCATGCTTGCGAGCTGACGCGAAACTCTTTCCGAGAGATTTCA
ATCCTGTTGAGCCAATTTCTGTCGTCTATTTGGTGATTAGATGGCAACTC
ATGGCCACCCGTGCCGCGCTGCAGCGAAGAACTATTATAGAGGAAAGGAG
CCATTACCTAACTCCTATCGAAGACATTCAGCCACCAAGAAGCAAAAGGA
CAAATCCATTCGCCCACAGGACAGACCTCGAAAGAGGGAGCAAGAAGAAG
AGAGTCTTAGAGGTTGCCGGGATTCCAACCGGTGACGATGAAGATGAGAA
TCAGGATTTTTTGACAAGGCTTGGGGGAGCAGCGCCCATCCGTCCAAGCC
AGTTAAAAGCATATCCAGGGCGCACAACAGTTCTTTTGAATGCTACAGAG
CTTATGGGATCCTCAATTCTGCATTCGTTTTGTCAGAAAGGAATAAATAT
CGAACTCGTGATTCGGAACATCAGATGGCCCAGACAGGCAGACGGCCCCC
GTATTGATCCCGAATACTTCGTAATGCATCACCTCAAAGAAATACTTCAA
CTTTCCGGAAATCTAGCACTTGCTCTGCACGTCGTCGATGATATTTACTT
TGTGTTCGTGAACTGGAATAAGAAAGATGTTGCCCGACTGCAGTACTTTG
TAGAGGAAGAATTATCGCGGAATTTTCTTCCGGTGAAAAGAGAGAAATCG
TCCCCCATCGGAAACGTCGAGACGGTCCGAATGCCCTTTATTGGATGGAT
ATGGTACCTTAAGCATGGCGTAATACGACCCAAACCAGGAAAGATCGAAT
CTGCCATCAGGTTCGTGCTTGCCACAACCGAAGCTGCCGCCTCAGAAGCT
GTCATAAGATCCACCGTTGGAAAACGGGTCTAG
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