Ggra4322.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4322.t1
Unique Name	Ggra4322.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	432

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000022_pilon	contig	tig00000022_pilon:650926..652221 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4322	Ggra4322	Gracilaria gracilis GNS1m male	gene	tig00000022_pilon 650926..652221 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4322.t1.stop1	Ggra4322.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000022_pilon 650926..650928 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4322.t1.CDS1	Ggra4322.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000022_pilon 650926..652221 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4322.t1.exon1	Ggra4322.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000022_pilon 650926..652221 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4322.t1.start1	Ggra4322.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000022_pilon 652219..652221 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4322.t1	Ggra4322.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000022_pilon 650926..652221 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000022_pilon:650926..652221-
coding sequence from alignment at tig00000022_pilon:650926..652221-

mRNA sequence

>Ggra4322.t1 ID=Ggra4322.t1|Name=Ggra4322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=432bp
MRQHAAENLFQTIPPLYPSSPFPSIDYVTKPFADILDAIALVMVLWTTAA
IVNRLMTIPFGRNTRTVLLQRMFDNLTNLRFPTSHCFTAQARRNHWLFSF
SSILFRLIATSFFLVLGGAEVAVIYSQTFQQKARSLDELNLKGITFHIPQ
NGEDLTGYFRGCVPLLSGEHTSTSLVFMLCMYQEFANEETAAELSGFEFQ
FTSSDPRFFDIYEAVSTIDLRSRISVEIRDPRRSALYFANMSRLGFSMTS
SKLEWLSRKLKENCTSCVVSAEYVSPTFSVLRSSNNPVVDRENKVDMAIR
FSDYVLSMIRLSNRKLKSSDFLSEYAQDEKSELGLLEVSVGRVKRVSGLT
LWIVLAALAVINFVSSRLTYDIDDDVNGIVAAALAYPPETSLLDCENTRF
SIVDTHLPSIQREKGSETEQRTSKRGMLIGC*

spliced messenger RNA

>Ggra4322.t1 ID=Ggra4322.t1|Name=Ggra4322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000022_pilon:650926..652221- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACAACATGCAGCTGAAAATCTGTTTCAAACCATCCCACCGCTCTA
TCCGTCTTCACCTTTTCCATCAATCGACTACGTTACAAAACCATTCGCAG
ATATTCTTGATGCAATTGCTTTAGTTATGGTTCTATGGACCACTGCGGCA
ATCGTGAATCGGTTAATGACGATCCCATTCGGGAGAAACACGCGAACTGT
TTTGCTGCAGCGCATGTTTGATAATCTCACCAATCTCCGCTTTCCAACAT
CTCACTGTTTCACAGCTCAAGCACGGCGCAATCATTGGTTATTCTCATTC
TCTAGCATATTGTTTAGACTCATTGCTACATCATTCTTTCTGGTCCTTGG
CGGGGCGGAGGTTGCTGTGATATATTCTCAAACATTCCAGCAGAAGGCCA
GAAGCCTGGATGAATTGAACCTCAAGGGCATTACCTTTCATATTCCTCAG
AATGGAGAGGATCTGACAGGTTACTTTCGGGGATGCGTACCCCTGTTATC
GGGCGAGCATACAAGTACCAGTCTTGTGTTCATGCTCTGCATGTACCAAG
AGTTCGCCAATGAGGAAACAGCTGCTGAACTCAGTGGTTTTGAGTTTCAA
TTCACATCATCTGATCCGCGATTCTTTGACATCTATGAAGCGGTATCTAC
CATCGACCTGCGCAGCAGAATTTCGGTGGAAATCAGGGATCCAAGGCGCT
CGGCTCTATATTTTGCTAATATGTCGCGACTTGGATTCTCTATGACTTCA
TCCAAACTTGAATGGCTGTCAAGAAAACTGAAGGAAAATTGTACCTCGTG
TGTGGTTAGCGCGGAGTATGTCAGCCCGACGTTTTCTGTTCTTCGCTCAT
CCAATAATCCGGTCGTAGACAGAGAGAACAAAGTGGATATGGCCATTCGA
TTTTCGGACTACGTGCTATCAATGATTCGGCTGTCAAACAGAAAGCTGAA
AAGCAGTGACTTTCTAAGCGAATACGCTCAGGATGAAAAGAGCGAGCTGG
GTTTACTCGAAGTGAGTGTTGGCAGAGTGAAGAGAGTAAGCGGGTTGACA
TTATGGATTGTACTCGCAGCGCTTGCCGTCATTAATTTTGTTAGCAGTCG
ACTAACGTATGATATAGATGACGACGTCAATGGCATTGTCGCAGCTGCGC
TGGCATACCCGCCAGAAACATCACTACTAGACTGCGAGAATACAAGATTC
TCAATCGTTGATACCCATCTTCCATCTATTCAACGCGAGAAGGGCAGTGA
AACTGAGCAAAGGACGTCGAAGCGTGGCATGCTCATCGGATGCTAA

protein sequence of Ggra4322.t1

>Ggra4322.t1 ID=Ggra4322.t1|Name=Ggra4322.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=432bp
MRQHAAENLFQTIPPLYPSSPFPSIDYVTKPFADILDAIALVMVLWTTAA
IVNRLMTIPFGRNTRTVLLQRMFDNLTNLRFPTSHCFTAQARRNHWLFSF
SSILFRLIATSFFLVLGGAEVAVIYSQTFQQKARSLDELNLKGITFHIPQ
NGEDLTGYFRGCVPLLSGEHTSTSLVFMLCMYQEFANEETAAELSGFEFQ
FTSSDPRFFDIYEAVSTIDLRSRISVEIRDPRRSALYFANMSRLGFSMTS
SKLEWLSRKLKENCTSCVVSAEYVSPTFSVLRSSNNPVVDRENKVDMAIR
FSDYVLSMIRLSNRKLKSSDFLSEYAQDEKSELGLLEVSVGRVKRVSGLT
LWIVLAALAVINFVSSRLTYDIDDDVNGIVAAALAYPPETSLLDCENTRF
SIVDTHLPSIQREKGSETEQRTSKRGMLIGC*

mRNA from alignment at tig00000022_pilon:650926..652221-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4322.t1 ID=Ggra4322.t1|Name=Ggra4322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000022_pilon:650926..652221- (Gracilaria gracilis GNS1m male)
ATGAGACAACATGCAGCTGAAAATCTGTTTCAAACCATCCCACCGCTCTA
TCCGTCTTCACCTTTTCCATCAATCGACTACGTTACAAAACCATTCGCAG
ATATTCTTGATGCAATTGCTTTAGTTATGGTTCTATGGACCACTGCGGCA
ATCGTGAATCGGTTAATGACGATCCCATTCGGGAGAAACACGCGAACTGT
TTTGCTGCAGCGCATGTTTGATAATCTCACCAATCTCCGCTTTCCAACAT
CTCACTGTTTCACAGCTCAAGCACGGCGCAATCATTGGTTATTCTCATTC
TCTAGCATATTGTTTAGACTCATTGCTACATCATTCTTTCTGGTCCTTGG
CGGGGCGGAGGTTGCTGTGATATATTCTCAAACATTCCAGCAGAAGGCCA
GAAGCCTGGATGAATTGAACCTCAAGGGCATTACCTTTCATATTCCTCAG
AATGGAGAGGATCTGACAGGTTACTTTCGGGGATGCGTACCCCTGTTATC
GGGCGAGCATACAAGTACCAGTCTTGTGTTCATGCTCTGCATGTACCAAG
AGTTCGCCAATGAGGAAACAGCTGCTGAACTCAGTGGTTTTGAGTTTCAA
TTCACATCATCTGATCCGCGATTCTTTGACATCTATGAAGCGGTATCTAC
CATCGACCTGCGCAGCAGAATTTCGGTGGAAATCAGGGATCCAAGGCGCT
CGGCTCTATATTTTGCTAATATGTCGCGACTTGGATTCTCTATGACTTCA
TCCAAACTTGAATGGCTGTCAAGAAAACTGAAGGAAAATTGTACCTCGTG
TGTGGTTAGCGCGGAGTATGTCAGCCCGACGTTTTCTGTTCTTCGCTCAT
CCAATAATCCGGTCGTAGACAGAGAGAACAAAGTGGATATGGCCATTCGA
TTTTCGGACTACGTGCTATCAATGATTCGGCTGTCAAACAGAAAGCTGAA
AAGCAGTGACTTTCTAAGCGAATACGCTCAGGATGAAAAGAGCGAGCTGG
GTTTACTCGAAGTGAGTGTTGGCAGAGTGAAGAGAGTAAGCGGGTTGACA
TTATGGATTGTACTCGCAGCGCTTGCCGTCATTAATTTTGTTAGCAGTCG
ACTAACGTATGATATAGATGACGACGTCAATGGCATTGTCGCAGCTGCGC
TGGCATACCCGCCAGAAACATCACTACTAGACTGCGAGAATACAAGATTC
TCAATCGTTGATACCCATCTTCCATCTATTCAACGCGAGAAGGGCAGTGA
AACTGAGCAAAGGACGTCGAAGCGTGGCATGCTCATCGGATGCTAA

Coding sequence (CDS) from alignment at tig00000022_pilon:650926..652221-

>Ggra4322.t1 ID=Ggra4322.t1|Name=Ggra4322.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1296bp|location=Sequence derived from alignment at tig00000022_pilon:650926..652221- (Gracilaria gracilis GNS1m male)
ATGAGACAACATGCAGCTGAAAATCTGTTTCAAACCATCCCACCGCTCTA
TCCGTCTTCACCTTTTCCATCAATCGACTACGTTACAAAACCATTCGCAG
ATATTCTTGATGCAATTGCTTTAGTTATGGTTCTATGGACCACTGCGGCA
ATCGTGAATCGGTTAATGACGATCCCATTCGGGAGAAACACGCGAACTGT
TTTGCTGCAGCGCATGTTTGATAATCTCACCAATCTCCGCTTTCCAACAT
CTCACTGTTTCACAGCTCAAGCACGGCGCAATCATTGGTTATTCTCATTC
TCTAGCATATTGTTTAGACTCATTGCTACATCATTCTTTCTGGTCCTTGG
CGGGGCGGAGGTTGCTGTGATATATTCTCAAACATTCCAGCAGAAGGCCA
GAAGCCTGGATGAATTGAACCTCAAGGGCATTACCTTTCATATTCCTCAG
AATGGAGAGGATCTGACAGGTTACTTTCGGGGATGCGTACCCCTGTTATC
GGGCGAGCATACAAGTACCAGTCTTGTGTTCATGCTCTGCATGTACCAAG
AGTTCGCCAATGAGGAAACAGCTGCTGAACTCAGTGGTTTTGAGTTTCAA
TTCACATCATCTGATCCGCGATTCTTTGACATCTATGAAGCGGTATCTAC
CATCGACCTGCGCAGCAGAATTTCGGTGGAAATCAGGGATCCAAGGCGCT
CGGCTCTATATTTTGCTAATATGTCGCGACTTGGATTCTCTATGACTTCA
TCCAAACTTGAATGGCTGTCAAGAAAACTGAAGGAAAATTGTACCTCGTG
TGTGGTTAGCGCGGAGTATGTCAGCCCGACGTTTTCTGTTCTTCGCTCAT
CCAATAATCCGGTCGTAGACAGAGAGAACAAAGTGGATATGGCCATTCGA
TTTTCGGACTACGTGCTATCAATGATTCGGCTGTCAAACAGAAAGCTGAA
AAGCAGTGACTTTCTAAGCGAATACGCTCAGGATGAAAAGAGCGAGCTGG
GTTTACTCGAAGTGAGTGTTGGCAGAGTGAAGAGAGTAAGCGGGTTGACA
TTATGGATTGTACTCGCAGCGCTTGCCGTCATTAATTTTGTTAGCAGTCG
ACTAACGTATGATATAGATGACGACGTCAATGGCATTGTCGCAGCTGCGC
TGGCATACCCGCCAGAAACATCACTACTAGACTGCGAGAATACAAGATTC
TCAATCGTTGATACCCATCTTCCATCTATTCAACGCGAGAAGGGCAGTGA
AACTGAGCAAAGGACGTCGAAGCGTGGCATGCTCATCGGATGCTAA