Ggra9034.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9034.t1
Unique NameGgra9034.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Homology
BLAST of Ggra9034.t1 vs. uniprot
Match: A0A2V3INK8 (30S ribosomal protein S4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INK8_9FLOR)

HSP 1 Score: 395 bits (1014), Expect = 8.020e-137
Identity = 204/268 (76.12%), Postives = 225/268 (83.96%), Query Frame = 0
Query:    1 MPVNYQLKNLRRLFGEASFLRPAT-ETPATPLGKVARVTRRT----PSDPPQKRTKPPGGIPRAFFSEQPPRSIRNKAVSSQLFSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            MPVNYQLKNLRRLFGE +FLRPAT E      GK+ARVTRR      +D   KRTK  GG+PRAFF EQPPRS+RNKAV++QL +IHLFEKQKMRLYYGA+RDA F KYVQ+A  TR+N DA LIRLLELRLDTFLYRT F KTP+QARQWIYH HVLVN DVV+VKS++MRPGD+MSIA HHVE A  A+ + AQMR+ FGCGASWIVSR + AGMLPWMEIDRVGLSA LVR PTDEEARSMTRAALFP+IRDANLNP AAMRAYR
Sbjct:    1 MPVNYQLKNLRRLFGEGTFLRPATGEGLPQATGKIARVTRRLVAAKDADSQPKRTKLLGGVPRAFFGEQPPRSVRNKAVAAQLNTIHLFEKQKMRLYYGAMRDAKFKKYVQEATCTRYNTDAHLIRLLELRLDTFLYRTGFVKTPSQARQWIYHEHVLVNNDVVSVKSYRMRPGDVMSIASHHVENAFLAATDCAQMRQSFGCGASWIVSRNDPAGMLPWMEIDRVGLSAILVRHPTDEEARSMTRAALFPYIRDANLNPHAAMRAYR 268          
BLAST of Ggra9034.t1 vs. uniprot
Match: R7QFH5 (S4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFH5_CHOCR)

HSP 1 Score: 311 bits (797), Expect = 1.020e-103
Identity = 163/281 (58.01%), Postives = 196/281 (69.75%), Query Frame = 0
Query:    1 MPVNYQLKNLRRLFGEASFLR------------------PATETPATPLGKVARVTRRTPSDPPQKRTKPPGGIPRAFFSEQPPRSIRNKAVSSQLFSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            MPV+Y+L+NLRRLFG A+FLR                   AT   A+  GK     +R      ++RTK PGGIPRAFFSEQPPR +RNK+   QLF+ HLFEKQKM+LYYGA+ D  F +YV +A   R N DA L+RLLELRLDTFLYRT   KTP Q RQWI H  +LVNG  V +K  ++RPGD++S+   H E AL+AS E+A++R   G GASWI+S  + AGMLPWMEIDR GL+A LVR PTD+EAR+M RAALFP+IRDA LNP AAMRAYR
Sbjct:    1 MPVDYKLRNLRRLFGNANFLRVNADGGSAGKHASGRRRGEATGAAASAEGKEDGSGKR------ERRTKVPGGIPRAFFSEQPPRPVRNKSAGGQLFTTHLFEKQKMKLYYGAMGDKKFKRYVDEARNCRRNTDAMLLRLLELRLDTFLYRTGLVKTPMQGRQWINHAQILVNGRPVNMKGNRLRPGDVVSVRDRHQEHALKASREAAELRAKLGLGASWILSDPDPAGMLPWMEIDRSGLAAVLVREPTDDEARAMARAALFPYIRDAKLNPHAAMRAYR 275          
BLAST of Ggra9034.t1 vs. uniprot
Match: A0A7S1XDQ9 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDQ9_9RHOD)

HSP 1 Score: 163 bits (413), Expect = 2.330e-46
Identity = 88/206 (42.72%), Postives = 127/206 (61.65%), Query Frame = 0
Query:   60 FFSEQ--PPRSIRNKAVSSQLFSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            FF +   PPR    K  S   ++  L EKQKMR+YYG ++D +F +YV++A ++R N    L+  LE R+DT LYR+ F  T  Q +QWI HGHVLVNG  +  K+  MRPG+++ I P  +  A   +  +AQ+R   G  A+W V +     MLP +E++R  +  A++R PT EE  ++TRA +FP ++DANLNP  A+R YR
Sbjct:   21 FFQKPGVPPRPTAGKVASGVYYAKALLEKQKMRIYYGNMKDRVFKRYVEEAKRSRGNPVDYLLSRLESRVDTTLYRSGFVTTMQQGQQWISHGHVLVNGRTMDRKNGAMRPGNMIQIDPSFLAQAAMQAKMAAQIRAKAGGSAAWGVGQD---AMLPHLEVNRRTMCIAVIRDPTFEELMALTRAPMFPLVKDANLNPQWALRYYR 223          
BLAST of Ggra9034.t1 vs. uniprot
Match: A0A5J4YYB0 (30S ribosomal protein S4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYB0_PORPP)

HSP 1 Score: 145 bits (367), Expect = 4.810e-39
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 0
Query:   66 PRSIRNKAVSSQLFSIH-LFEKQKMRLYYGAIRDAMFNKYVQKAAKTRH-NVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEEARSMTRAALFPFIRDANLNPLAAMRAYR 263
            PR   N   +S +F    L EKQKMR YYG +RD  F + V++A ++   N    L+R LELRLDT LYRT    +  Q+++ +  GHVLVNG   T  + ++R GD+ +I P  +      +++ A  R   G G SW+  R +  GM+ ++E++R GLSA LVR P  EE   +TRAA FP++RDANLNP  AM  Y+
Sbjct:   62 PRQGPNGKSASGMFGTQALIEKQKMRTYYGNMRDFKFKRLVRQARESGGTNPSEFLMRRLELRLDTMLYRTCMVWSMRQSQKLVKDGHVLVNGKRCTHSNRELRTGDVFAIHPSMIGTVAAIAIKVASRRMVMGLGQSWV--RNSPLGMVSYLEVNREGLSAVLVREPRAEELGVLTRAAFFPYLRDANLNPQRAMAYYK 259          
BLAST of Ggra9034.t1 vs. uniprot
Match: A0A7C2V4P2 (30S ribosomal protein S4 n=3 Tax=Aquificae TaxID=200783 RepID=A0A7C2V4P2_9AQUI)

HSP 1 Score: 109 bits (273), Expect = 1.110e-25
Identity = 54/155 (34.84%), Postives = 86/155 (55.48%), Query Frame = 0
Query:   79 FSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTD 233
            + + L EKQK++L YG +R+  F +Y  +A++++ N    L++LLE RLD  +YR  F  T  QARQW+ HGH LVNG  V + S+++ PGDI+ + P   ++     LE+ Q              R +   + PW+E+D+      ++ LP D
Sbjct:   52 YGLRLMEKQKLKLLYGGLREKQFKRYFDEASRSKGNTGQVLLQLLERRLDNVVYRLGFASTRRQARQWVAHGHFLVNGKKVDIPSYRVEPGDIIEVRPESRDIP--QLLENIQ--------------RIDPRSIPPWLELDKDNFRGKVLDLPKD 190          
BLAST of Ggra9034.t1 vs. uniprot
Match: A0A1M6RZE7 (30S ribosomal protein S4 n=1 Tax=Thermocrinis minervae TaxID=381751 RepID=A0A1M6RZE7_9AQUI)

HSP 1 Score: 105 bits (263), Expect = 3.280e-24
Identity = 52/156 (33.33%), Postives = 84/156 (53.85%), Query Frame = 0
Query:   79 FSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELA-LQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTD 233
            + + L EKQK++  YG +R+  F +Y ++A++ + N    L++LLE RLD  +YR  F  T  QARQWI HGH LVNG  V + S+++  GD++ + P   ++  L  +LE+   R                  + PW+E+D+      ++ LP D
Sbjct:   52 YGLRLMEKQKLKFLYGGLREKQFKRYFEEASRAKGNTGQVLLQLLERRLDNVVYRLGFASTRRQARQWIVHGHFLVNGKKVNIPSYRVEVGDVIEVKPSSRDIPQLLENLENIDPRS-----------------IPPWLELDKENFRGKVIDLPKD 190          
BLAST of Ggra9034.t1 vs. uniprot
Match: A0A6C1BRQ7 (30S ribosomal protein S4 n=1 Tax=Hydrogenobacter sp. T-8 TaxID=1632019 RepID=A0A6C1BRQ7_9AQUI)

HSP 1 Score: 103 bits (258), Expect = 1.770e-23
Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 0
Query:   79 FSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELA-LQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTD 233
            + I L EKQK++  YG +R+  F +Y  +A++++ N    L++LLE RLD  +YR  F  T  QARQWI HGH LVNG  V + S+++  GDI+ + P   ++  +  +LE+   R                  + PW+E+D+      ++ LP D
Sbjct:   52 YGIRLMEKQKLKFLYGGLREKQFKRYFDEASRSKGNTGQVLLQLLERRLDNVVYRLGFASTRRQARQWIVHGHFLVNGRKVDIPSYRVEVGDIIELKPSSRDIPQVLENLENTDPRS-----------------VPPWLELDKDNYRGKVIDLPKD 190          
BLAST of Ggra9034.t1 vs. uniprot
Match: D3SQD9 (30S ribosomal protein S4 n=6 Tax=Thermocrinis TaxID=75905 RepID=D3SQD9_THEAH)

HSP 1 Score: 100 bits (249), Expect = 3.670e-22
Identity = 52/156 (33.33%), Postives = 82/156 (52.56%), Query Frame = 0
Query:   79 FSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELA-LQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTD 233
            + I L EKQK++  YG IR+  F KY   A+K++ N    L++LLE RLD  +YR     T  QARQ++ HGH+LVNG  V + S+ + PGD++ + P   ++  +  +LE+   R                  + PW+E+D+      ++  P D
Sbjct:   52 YGIRLMEKQKLKFLYGGIREKQFKKYFDMASKSKGNTGQVLLQLLERRLDNVVYRLGIACTRRQARQFVAHGHILVNGKKVNIPSYLVEPGDVIEVKPSSRDIPQIIENLENMDPRS-----------------VPPWLELDKENFRGKVLDYPKD 190          
BLAST of Ggra9034.t1 vs. uniprot
Match: A0A3M2GYI3 (30S ribosomal protein S4 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M2GYI3_9BACT)

HSP 1 Score: 100 bits (248), Expect = 5.130e-22
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 0
Query:   79 FSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELA-LQASLESAQMRKGFGCGASWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEE 235
            + + L EKQK++  YG +R+  F +Y  +A++++ N    L++LLE RLD  +YR  F  T  QARQWI HGH L+NG  V + S+++  GD++ + P   ++  L  +++    R                  +  W+E+D+      ++ LP D E
Sbjct:   52 YGVRLLEKQKLKFLYGGLREKQFKRYFDEASRSKGNTGQVLLQLLERRLDNVVYRLGFAATRRQARQWISHGHFLINGKKVNIPSYRVEVGDVIEVKPTSRDIPQLIGNIQDIDPRS-----------------IPSWLELDKENFKGKVIDLPRDIE 192          
BLAST of Ggra9034.t1 vs. uniprot
Match: RS4 (30S ribosomal protein S4 n=8 Tax=Acidiphilium TaxID=522 RepID=RS4_ACICJ)

HSP 1 Score: 99.8 bits (247), Expect = 6.390e-22
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 0
Query:   79 FSIHLFEKQKMRLYYGAIRDAMFNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHGHVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQA-SLESAQ 191
            F + L  KQK+R YYG I +  F KY ++A + R +    LI LLE RLD  +YR  F  TP  ARQ++ HGHVLVNG  V + S+Q+R GD++ +     +LA+   S++SA+
Sbjct:   47 FGVQLMAKQKLRGYYGNISEKQFYKYYEEAVRRRGDTSENLIELLERRLDAVVYRMKFAITPFAARQFVSHGHVLVNGRRVNISSYQVRDGDVVEVREKSKQLAMVLDSVQSAE 160          
The following BLAST results are available for this feature:
BLAST of Ggra9034.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INK88.020e-13776.1230S ribosomal protein S4 n=1 Tax=Gracilariopsis ch... [more]
R7QFH51.020e-10358.01S4 domain-containing protein n=1 Tax=Chondrus cris... [more]
A0A7S1XDQ92.330e-4642.72Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YYB04.810e-3942.5030S ribosomal protein S4 n=1 Tax=Porphyridium purp... [more]
A0A7C2V4P21.110e-2534.8430S ribosomal protein S4 n=3 Tax=Aquificae TaxID=2... [more]
A0A1M6RZE73.280e-2433.3330S ribosomal protein S4 n=1 Tax=Thermocrinis mine... [more]
A0A6C1BRQ71.770e-2333.9730S ribosomal protein S4 n=1 Tax=Hydrogenobacter s... [more]
D3SQD93.670e-2233.3330S ribosomal protein S4 n=6 Tax=Thermocrinis TaxI... [more]
A0A3M2GYI35.130e-2231.0130S ribosomal protein S4 n=1 Tax=Acidobacteria bac... [more]
RS46.390e-2243.8630S ribosomal protein S4 n=8 Tax=Acidiphilium TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 125..185
e-value: 5.3E-8
score: 42.6
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 126..171
e-value: 2.4E-13
score: 49.6
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 126..180
e-value: 2.52616E-14
score: 64.193
NoneNo IPR availableGENE3D1.10.1050.10Ribosomal Protein S4 Delta 41; Chain A, domain 1coord: 79..237
e-value: 8.0E-30
score: 105.7
NoneNo IPR availablePROSITEPS50889S4coord: 125..208
score: 12.822762
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 34..184
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 33..124
e-value: 1.8E-5
score: 25.5
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 126..231
e-value: 8.0E-30
score: 105.7
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 70..232
IPR005709Ribosomal protein S4, bacterial-typePANTHERPTHR11831:SF437S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIALcoord: 70..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1380929..1381720 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9034.t1Ggra9034.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 1380929..1381720 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9034.t1 ID=Ggra9034.t1|Name=Ggra9034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MPVNYQLKNLRRLFGEASFLRPATETPATPLGKVARVTRRTPSDPPQKRT
KPPGGIPRAFFSEQPPRSIRNKAVSSQLFSIHLFEKQKMRLYYGAIRDAM
FNKYVQKAAKTRHNVDAQLIRLLELRLDTFLYRTSFTKTPAQARQWIYHG
HVLVNGDVVTVKSFQMRPGDIMSIAPHHVELALQASLESAQMRKGFGCGA
SWIVSRANVAGMLPWMEIDRVGLSAALVRLPTDEEARSMTRAALFPFIRD
ANLNPLAAMRAYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR001912Ribosomal_S4/S9_N
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9
IPR005709Ribosomal_S4_bac-type