Ggra8955.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8955.t1
Unique NameGgra8955.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length377
Homology
BLAST of Ggra8955.t1 vs. uniprot
Match: A0A2V3INL8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL8_9FLOR)

HSP 1 Score: 561 bits (1447), Expect = 3.510e-199
Identity = 279/371 (75.20%), Postives = 313/371 (84.37%), Query Frame = 0
Query:    1 MGFVRRAALALLVLWVLVATNPSASSTSSFAAFIRSITPSSTVPLRKCLDGSFPLCIESRRAYPQLSVALEMWFAPHRLAPAMLRDLEFETIDYAIFTVARSKPFPTVDNPGFAFIGILTLWLPVPHPARFTGSVELPNLIRFLRSHVRRLRRLRRVLFSYRRGPSFAPFRERSLPDRPWEWLIAFFSIVGVLWFMIPSRAKNHFTLTWHNLREKGHWWCMIFFHLSHGGSLLRLFRTIVSLNYLAPLLVSNRIVTLSGLYGIVLTSSATSTALAMLVLTRRSIFASQYIAPSTPLEINGGGACVYALLVAACLSPSCNEPLPGGARPFELLMLNVLFDSFFLAGKKRIADYIAHTGASLGAWLFCSINMS 371
            M  + R ALAL VLWVLVATNPSASS +SF+ FI ++T S+T PLR+C  G +PLC+ESRRAYP LS+ LE  FAPHR+  A LR+L FE+ DY IFTV RS P PT DNPG AFIGILT+WLPVPHPAR TGSVELP+LIR LRS   R+R +RR  F+ + G SF  FRE SLPDRPWEWLIA FSIVG LWFMIP+RA+NHFTLTW N+R+ GHWWCM+FFHLSHGGSLLRLFRTIVS+NYLAPLLVS+  ++LSGLYG++LTSSATSTALAMLVL RR +F +     STPLEINGGGACVYALLV ACLSPSCNEPLPGGARPFELLMLNVLFDSFFLAG+KRIADY AHTGA+LGAWLFCSINMS
Sbjct:    1 MSPILRVALALFVLWVLVATNPSASSNTSFSTFITAVTSSTTRPLRQCHPGDYPLCVESRRAYPGLSLILEALFAPHRVDDARLRNLHFESTDYTIFTVVRSIPMPTSDNPGVAFIGILTMWLPVPHPARLTGSVELPHLIRVLRS---RVRSVRRAAFANQAGRSFEAFRETSLPDRPWEWLIACFSIVGALWFMIPARARNHFTLTWQNVRQNGHWWCMVFFHLSHGGSLLRLFRTIVSVNYLAPLLVSDGRISLSGLYGVLLTSSATSTALAMLVLARRYVFGTLQSRSSTPLEINGGGACVYALLVVACLSPSCNEPLPGGARPFELLMLNVLFDSFFLAGQKRIADYTAHTGAALGAWLFCSINMS 368          
BLAST of Ggra8955.t1 vs. uniprot
Match: R7QGB7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QGB7_CHOCR)

HSP 1 Score: 426 bits (1096), Expect = 7.990e-146
Identity = 221/374 (59.09%), Postives = 267/374 (71.39%), Query Frame = 0
Query:    1 MGFVRRAALALLVLWVLVATNPSASSTSSFAAFIRSITPSSTVPLRKCLDGSFPLCIESRRAYPQLSVALEMWFAPHRLAPAMLRD---LEFETIDYAIFTVARSKPFPTVDNPGFAFIGILTLWLPVPHPARFTGSVELPNLIRFLRSHVRRLRRLRRVLFSYRRGPSFAPFRERSLPDRPWEWLIAFFSIVGVLWFMIPSRAKNHFTLTWHNLREKGHWWCMIFFHLSHGGSLLRLFRTIVSLNYLAPLLVSNRIVTLSGLYGIVLTSSATSTALAMLVLTRRSIFASQYIAPSTPLEINGGGACVYALLVAACLSPSCNEPLPGGARPFELLMLNVLFDSFFLAGKKRIADYIAHTGASLGAWLFCSINMS 371
            MG +RR      VLW+LVATNP  SS   F   +   T   T   +K    S  +C+ +R+A+P LS ALE  FAPHR  P+ L D     FE +D A+FT+AR++     D P   FIGIL  WLP+PH AR  GSVE  N +R+LR   RR+  ++R  F      SF  FRERSLPDRPWEWLI +F+IVG +WFM P  A  HFTLTW N+R KG+WWCMI FHLSHGGSLLRL RT+ S+++LAP+L+S RI+ LSG+YG++LTSSATSTAL MLVL RR +F ++     +P+EINGGGACVYALLVAACL+P  N   PGGARPFELLMLNVLFDSFFLAGK++IADYIAHTGA+LG+WLFCSIN S
Sbjct:    1 MGSIRRLLCTFAVLWILVATNPGPSSFRHFLTKLHR-THLHTPTCQKA--HSRDICLHARQAFPHLSAALESIFAPHRQVPSWLPDGPPHHFEVVDCAVFTLARTRLADLPDRPRHNFIGILGAWLPLPHTARLLGSVESRNFVRYLR---RRVALVKRAAFDQDLR-SFEAFRERSLPDRPWEWLIVYFAIVGAIWFMFPQHATQHFTLTWQNVRLKGNWWCMILFHLSHGGSLLRLCRTVASISFLAPILISRRIINLSGMYGVLLTSSATSTALGMLVLARRYVFMTRESGTRSPIEINGGGACVYALLVAACLAPDSNRSFPGGARPFELLMLNVLFDSFFLAGKRKIADYIAHTGAALGSWLFCSINQS 367          
The following BLAST results are available for this feature:
BLAST of Ggra8955.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INL83.510e-19975.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QGB77.990e-14659.09Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 218..240
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..179
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 260..279
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 198..217
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 280..376
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 241..259
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 180..197
NoneNo IPR availableTMHMMTMhelixcoord: 180..197
NoneNo IPR availableTMHMMTMhelixcoord: 257..279
NoneNo IPR availableTMHMMTMhelixcoord: 217..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:966645..967775 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8955.t1Ggra8955.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 966645..967775 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8955.t1 ID=Ggra8955.t1|Name=Ggra8955.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=377bp
MGFVRRAALALLVLWVLVATNPSASSTSSFAAFIRSITPSSTVPLRKCLD
GSFPLCIESRRAYPQLSVALEMWFAPHRLAPAMLRDLEFETIDYAIFTVA
RSKPFPTVDNPGFAFIGILTLWLPVPHPARFTGSVELPNLIRFLRSHVRR
LRRLRRVLFSYRRGPSFAPFRERSLPDRPWEWLIAFFSIVGVLWFMIPSR
AKNHFTLTWHNLREKGHWWCMIFFHLSHGGSLLRLFRTIVSLNYLAPLLV
SNRIVTLSGLYGIVLTSSATSTALAMLVLTRRSIFASQYIAPSTPLEING
GGACVYALLVAACLSPSCNEPLPGGARPFELLMLNVLFDSFFLAGKKRIA
DYIAHTGASLGAWLFCSINMSTTTET*
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