Ggra8990.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8990.t1
Unique NameGgra8990.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:1070205..1070966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705573.1
Preferred nameRPL8
PFAMsRibosomal_L2,Ribosomal_L2_C
Max annot lvl2759|Eukaryota
KEGG koko:K02938
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue9.53e-146
EggNOG OGsCOG0090@1|root,KOG2309@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8990Ggra8990Gracilaria gracilis GNS1m malegenetig00000860_pilon 1070205..1070966 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8990.t1.stop1Ggra8990.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 1070205..1070207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8990.t1.CDS1Ggra8990.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 1070205..1070966 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8990.t1.exon1Ggra8990.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 1070205..1070966 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8990.t1.start1Ggra8990.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 1070964..1070966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8990.t1Ggra8990.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 1070205..1070966 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8990.t1 ID=Ggra8990.t1|Name=Ggra8990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=254bp
MGRVIRGQRKGAGGIFKSHTSKRKGAAKLRALDYSERHGYIRGTVKDIIH
DPGRGAPLAKVVFRDRVRYRKNAELFIAAEGMYTGQFLYCGRKANLTIGN
VMPLSEMPEGTIVCNVEAKNGDRGKLARASGDYVTVIGHLDGNKTRIRLP
SGSRKIVPSTCRAMVGIVAGGGRTDKPMLKAGTAYHKYRVKRNSWPKVRG
VAMNPVEHPHGGGNHQHVGHPTTVRRDAPAGKKVGLIAARRTGRIRGGKP
AKE*
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spliced messenger RNA

>Ggra8990.t1 ID=Ggra8990.t1|Name=Ggra8990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000860_pilon:1070205..1070966- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGAGTGATCCGCGGACAGAGAAAGGGAGCGGGCGGCATTTTCAA
GTCGCACACGTCGAAGCGAAAGGGCGCCGCCAAGCTGCGCGCGCTCGATT
ACTCCGAGCGTCACGGCTACATTCGCGGCACCGTCAAGGACATCATCCAC
GACCCCGGCCGCGGCGCCCCGCTTGCCAAGGTTGTATTCCGCGATCGCGT
GCGTTACAGGAAGAATGCTGAGCTCTTCATTGCCGCAGAAGGCATGTACA
CCGGCCAGTTTTTGTACTGCGGTCGCAAGGCAAACCTCACCATTGGCAAT
GTCATGCCGCTTTCGGAGATGCCTGAGGGTACCATTGTGTGCAACGTAGA
GGCCAAGAATGGAGATCGCGGAAAATTGGCTCGTGCGAGCGGCGACTATG
TCACCGTCATTGGTCATCTCGACGGCAATAAGACCAGGATCCGTCTGCCG
TCGGGATCCAGAAAGATTGTTCCCAGCACTTGCAGGGCGATGGTCGGCAT
TGTTGCAGGCGGTGGAAGAACCGATAAGCCAATGCTCAAGGCTGGTACCG
CCTATCACAAATACCGTGTCAAGAGAAACTCATGGCCCAAGGTCAGAGGT
GTGGCTATGAACCCTGTGGAACATCCTCACGGTGGTGGTAACCATCAGCA
CGTGGGACACCCCACAACCGTACGTCGTGACGCCCCAGCTGGTAAGAAGG
TCGGTCTTATTGCCGCGCGCCGCACAGGTCGTATTCGTGGTGGTAAGCCA
GCCAAGGAATAG
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protein sequence of Ggra8990.t1

>Ggra8990.t1 ID=Ggra8990.t1|Name=Ggra8990.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=254bp
MGRVIRGQRKGAGGIFKSHTSKRKGAAKLRALDYSERHGYIRGTVKDIIH
DPGRGAPLAKVVFRDRVRYRKNAELFIAAEGMYTGQFLYCGRKANLTIGN
VMPLSEMPEGTIVCNVEAKNGDRGKLARASGDYVTVIGHLDGNKTRIRLP
SGSRKIVPSTCRAMVGIVAGGGRTDKPMLKAGTAYHKYRVKRNSWPKVRG
VAMNPVEHPHGGGNHQHVGHPTTVRRDAPAGKKVGLIAARRTGRIRGGKP
AKE*
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mRNA from alignment at tig00000860_pilon:1070205..1070966-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8990.t1 ID=Ggra8990.t1|Name=Ggra8990.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000860_pilon:1070205..1070966- (Gracilaria gracilis GNS1m male)
ATGGGAAGAGTGATCCGCGGACAGAGAAAGGGAGCGGGCGGCATTTTCAA
GTCGCACACGTCGAAGCGAAAGGGCGCCGCCAAGCTGCGCGCGCTCGATT
ACTCCGAGCGTCACGGCTACATTCGCGGCACCGTCAAGGACATCATCCAC
GACCCCGGCCGCGGCGCCCCGCTTGCCAAGGTTGTATTCCGCGATCGCGT
GCGTTACAGGAAGAATGCTGAGCTCTTCATTGCCGCAGAAGGCATGTACA
CCGGCCAGTTTTTGTACTGCGGTCGCAAGGCAAACCTCACCATTGGCAAT
GTCATGCCGCTTTCGGAGATGCCTGAGGGTACCATTGTGTGCAACGTAGA
GGCCAAGAATGGAGATCGCGGAAAATTGGCTCGTGCGAGCGGCGACTATG
TCACCGTCATTGGTCATCTCGACGGCAATAAGACCAGGATCCGTCTGCCG
TCGGGATCCAGAAAGATTGTTCCCAGCACTTGCAGGGCGATGGTCGGCAT
TGTTGCAGGCGGTGGAAGAACCGATAAGCCAATGCTCAAGGCTGGTACCG
CCTATCACAAATACCGTGTCAAGAGAAACTCATGGCCCAAGGTCAGAGGT
GTGGCTATGAACCCTGTGGAACATCCTCACGGTGGTGGTAACCATCAGCA
CGTGGGACACCCCACAACCGTACGTCGTGACGCCCCAGCTGGTAAGAAGG
TCGGTCTTATTGCCGCGCGCCGCACAGGTCGTATTCGTGGTGGTAAGCCA
GCCAAGGAATAG
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Coding sequence (CDS) from alignment at tig00000860_pilon:1070205..1070966-

>Ggra8990.t1 ID=Ggra8990.t1|Name=Ggra8990.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000860_pilon:1070205..1070966- (Gracilaria gracilis GNS1m male)
ATGGGAAGAGTGATCCGCGGACAGAGAAAGGGAGCGGGCGGCATTTTCAA
GTCGCACACGTCGAAGCGAAAGGGCGCCGCCAAGCTGCGCGCGCTCGATT
ACTCCGAGCGTCACGGCTACATTCGCGGCACCGTCAAGGACATCATCCAC
GACCCCGGCCGCGGCGCCCCGCTTGCCAAGGTTGTATTCCGCGATCGCGT
GCGTTACAGGAAGAATGCTGAGCTCTTCATTGCCGCAGAAGGCATGTACA
CCGGCCAGTTTTTGTACTGCGGTCGCAAGGCAAACCTCACCATTGGCAAT
GTCATGCCGCTTTCGGAGATGCCTGAGGGTACCATTGTGTGCAACGTAGA
GGCCAAGAATGGAGATCGCGGAAAATTGGCTCGTGCGAGCGGCGACTATG
TCACCGTCATTGGTCATCTCGACGGCAATAAGACCAGGATCCGTCTGCCG
TCGGGATCCAGAAAGATTGTTCCCAGCACTTGCAGGGCGATGGTCGGCAT
TGTTGCAGGCGGTGGAAGAACCGATAAGCCAATGCTCAAGGCTGGTACCG
CCTATCACAAATACCGTGTCAAGAGAAACTCATGGCCCAAGGTCAGAGGT
GTGGCTATGAACCCTGTGGAACATCCTCACGGTGGTGGTAACCATCAGCA
CGTGGGACACCCCACAACCGTACGTCGTGACGCCCCAGCTGGTAAGAAGG
TCGGTCTTATTGCCGCGCGCCGCACAGGTCGTATTCGTGGTGGTAAGCCA
GCCAAGGAATAG
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