Ggra2904.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2904.t1
Unique NameGgra2904.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:370716..371509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7370.XP_005186195.1
Preferred nameMED4
PFAMsMed4
Max annot lvl33208|Metazoa
KEGG koko:K14618,ko:K15146
KEGG Pathwayko04919,ko04977,map04919,map04977
GOsGO:0000428,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007406,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0014070,GO:0016070,GO:0016591,GO:0016592,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022008,GO:0023052,GO:0030154,GO:0030374,GO:0030518,GO:0030521,GO:0030522,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032870,GO:0032991,GO:0033993,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0038023,GO:0042127,GO:0042221,GO:0042809,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0046483,GO:0046966,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051427,GO:0051716,GO:0051960,GO:0051961,GO:0055029,GO:0060089,GO:0060255,GO:0060284,GO:0061695,GO:0065007,GO:0070013,GO:0070847,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0072091,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
Evalue6.32e-15
EggNOG OGsKOG4552@1|root,KOG4552@2759|Eukaryota,38G5E@33154|Opisthokonta,3BGVP@33208|Metazoa,3CR9R@33213|Bilateria,41U6P@6656|Arthropoda,3SGB5@50557|Insecta,44ZCI@7147|Diptera
DescriptionRNA polymerase II transcription cofactor activity. It is involved in the biological process described with regulation of transcription from RNA polymerase II promoter
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2904Ggra2904Gracilaria gracilis GNS1m malegenetig00000858_pilon 370716..371509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2904.t1Ggra2904.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 370716..371509 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2904.t1.start1Ggra2904.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 370716..370718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2904.t1.CDS1Ggra2904.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 370716..370837 +
Ggra2904.t1.CDS2Ggra2904.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000858_pilon 370948..371063 +
Ggra2904.t1.CDS3Ggra2904.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000858_pilon 371130..371509 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2904.t1.exon1Ggra2904.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 370716..370837 +
Ggra2904.t1.exon2Ggra2904.t1.exon2Gracilaria gracilis GNS1m maleexontig00000858_pilon 370948..371063 +
Ggra2904.t1.exon3Ggra2904.t1.exon3Gracilaria gracilis GNS1m maleexontig00000858_pilon 371130..371509 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2904.t1.intron1Ggra2904.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000858_pilon 370838..370947 +
Ggra2904.t1.intron2Ggra2904.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000858_pilon 371064..371129 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2904.t1.stop1Ggra2904.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 371507..371509 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2904.t1 ID=Ggra2904.t1|Name=Ggra2904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=206bp
MVFKNEASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKR
AKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVE
DAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGS
KISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMDIEAEKGGESP
EKAST*
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spliced messenger RNA

>Ggra2904.t1 ID=Ggra2904.t1|Name=Ggra2904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00000858_pilon:370716..371509+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTTCAAGAATGAAGCAAGCAACGTTCCTATTCGTGACAGAGCACG
AGACGAACTCCGCGAATGCCGTTCTTTAATAAGCAATTTGTTTGTCGCTC
AAGCTGACTTACTCAAGTCTGTACCCACGGGAAACGAAGATGTGAAAAGA
GCAAAACGCGACATAACGAACGAGAGTGTACAAATTATGGAAAAGCTTGT
AGCTCAAGTGAAGTCCTTCCATGCGGCCATCGAACAAGTTCTTGAGCATC
AGCGTTTGAATGGCATCATTGAGGAACTGCGCAAAGCAAACAGCGTAGAA
GACGCTAAGATCGCTCATCTGGGTGCTAACCTTCGGGCAGCCGAGTCTGT
CATGCAAAACGCCTTGGATGAAGCCAAGCCTCGTCTTGCTGCGTTTAAGC
GTGCGAACAAGCGCCCAGTAGACGTTGATGAAGTAATTAGCTATGGGTCG
AAAATCAGCGCGTCTCTTTGTGCTCCGCCTGGATGGGATCCCTCTCAACC
ATTGGGCAATTCTCTACCGCCAGGTCCGACGGAGGAAATGATGCGAGCCG
GTAAGTTGGGAGCGATGGATATAGAAGCGGAGAAGGGAGGCGAGTCGCCT
GAAAAGGCAAGCACATGA
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protein sequence of Ggra2904.t1

>Ggra2904.t1 ID=Ggra2904.t1|Name=Ggra2904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MVFKNEASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKR
AKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVE
DAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGS
KISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMDIEAEKGGESP
EKAST*
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mRNA from alignment at tig00000858_pilon:370716..371509+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2904.t1 ID=Ggra2904.t1|Name=Ggra2904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=794bp|location=Sequence derived from alignment at tig00000858_pilon:370716..371509+ (Gracilaria gracilis GNS1m male)
ATGGTTTTCAAGAATGAAGCAAGCAACGTTCCTATTCGTGACAGAGCACG
AGACGAACTCCGCGAATGCCGTTCTTTAATAAGCAATTTGTTTGTCGCTC
AAGCTGACTTACTCAAGTCTGTGTACGTCGTTGCCATCCTATAATACATT
TTGCTCCGCTGGTCTTCCTCTCATGGCTCATTGTTCATTGCCCTTGCTGA
CGTTGTGAACTGACTTTTCGATGTGAACTCAGACCCACGGGAAACGAAGA
TGTGAAAAGAGCAAAACGCGACATAACGAACGAGAGTGTACAAATTATGG
AAAAGCTTGTAGCTCAAGTGAAGTCCTTCCATGCGGCCATCGAACAAGGT
AAGAAAGTCCTGTCCATTATTTGAACCCTGACATCTATCTGACTAGTTGT
TTGTCCTATGATAGTTCTTGAGCATCAGCGTTTGAATGGCATCATTGAGG
AACTGCGCAAAGCAAACAGCGTAGAAGACGCTAAGATCGCTCATCTGGGT
GCTAACCTTCGGGCAGCCGAGTCTGTCATGCAAAACGCCTTGGATGAAGC
CAAGCCTCGTCTTGCTGCGTTTAAGCGTGCGAACAAGCGCCCAGTAGACG
TTGATGAAGTAATTAGCTATGGGTCGAAAATCAGCGCGTCTCTTTGTGCT
CCGCCTGGATGGGATCCCTCTCAACCATTGGGCAATTCTCTACCGCCAGG
TCCGACGGAGGAAATGATGCGAGCCGGTAAGTTGGGAGCGATGGATATAG
AAGCGGAGAAGGGAGGCGAGTCGCCTGAAAAGGCAAGCACATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:370716..371509+

>Ggra2904.t1 ID=Ggra2904.t1|Name=Ggra2904.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00000858_pilon:370716..371509+ (Gracilaria gracilis GNS1m male)
ATGGTTTTCAAGAATGAAGCAAGCAACGTTCCTATTCGTGACAGAGCACG
AGACGAACTCCGCGAATGCCGTTCTTTAATAAGCAATTTGTTTGTCGCTC
AAGCTGACTTACTCAAGTCTGTACCCACGGGAAACGAAGATGTGAAAAGA
GCAAAACGCGACATAACGAACGAGAGTGTACAAATTATGGAAAAGCTTGT
AGCTCAAGTGAAGTCCTTCCATGCGGCCATCGAACAAGTTCTTGAGCATC
AGCGTTTGAATGGCATCATTGAGGAACTGCGCAAAGCAAACAGCGTAGAA
GACGCTAAGATCGCTCATCTGGGTGCTAACCTTCGGGCAGCCGAGTCTGT
CATGCAAAACGCCTTGGATGAAGCCAAGCCTCGTCTTGCTGCGTTTAAGC
GTGCGAACAAGCGCCCAGTAGACGTTGATGAAGTAATTAGCTATGGGTCG
AAAATCAGCGCGTCTCTTTGTGCTCCGCCTGGATGGGATCCCTCTCAACC
ATTGGGCAATTCTCTACCGCCAGGTCCGACGGAGGAAATGATGCGAGCCG
GTAAGTTGGGAGCGATGGATATAGAAGCGGAGAAGGGAGGCGAGTCGCCT
GAAAAGGCAAGCACATGA
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