Ggra2904.t1 (polypeptide) Gracilaria gracilis GNS1m male
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Overview
Homology
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A2V3J6B5 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B5_9FLOR) HSP 1 Score: 321 bits (822), Expect = 1.690e-109 Identity = 170/206 (82.52%), Postives = 184/206 (89.32%), Query Frame = 0
Query: 1 MVFKNEASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKR---AKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMDIEAEKGGESPEKA 203
MV N ASNVPIRDRARDELRECRSLIS+LFVAQA+LLKS+ T ++D KR KRD T ESVQIMEKLV QVKSFH+ +EQVLEHQRL+GIIEELRKANSVEDAKIAHLGANLRAAESV+QN+LDEAKPRLAAFKRANKRP+DVDEVISYGSKISASL AP GWDPSQPLGN LPP PTEEMMRAGKLGA+++E EKG E EKA
Sbjct: 1 MVQHNHASNVPIRDRARDELRECRSLISSLFVAQANLLKSISTASDDGKRIKDTKRDPTQESVQIMEKLVTQVKSFHSVMEQVLEHQRLHGIIEELRKANSVEDAKIAHLGANLRAAESVLQNSLDEAKPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPSQPLGNFLPPAPTEEMMRAGKLGAVEMEEEKGAELSEKA 206
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A7S0BGG5 (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGG5_9RHOD) HSP 1 Score: 122 bits (306), Expect = 1.280e-31 Identity = 70/183 (38.25%), Postives = 109/183 (59.56%), Query Frame = 0
Query: 5 NEASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
+++S +P RDRAR ELRE SL+ L + DL S EDV + R I ++L+ + K + ++++++HQ +N +IE++R + E+ K+ LG LR AE +Q + + R+AA + A K V+V +++ +KI +S APP W P++PLGN LPP P EEMMR+G LG
Sbjct: 2 DDSSAIPARDRARVELREFESLV-RLLIQYFDLSASGRMPGEDVLQPDR--------IAQELIERQKVLRSIVDELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLRGAELCLQGPDIDHEARIAALEGAKK--VNVKDIVELAAKIGSSYAAPPNWTPTEPLGNHLPPAPPEEMMRSGHLG 173
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A7S2ZT46 (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT46_9RHOD) HSP 1 Score: 121 bits (304), Expect = 1.560e-30 Identity = 72/190 (37.89%), Postives = 112/190 (58.95%), Query Frame = 0
Query: 6 EASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMDIEAEK 195
++S +P RDRAR ELRE SL+ L + DL S +EDV + R I ++L+ + K + ++++HQ +N +IE++R + E+ K+ LG LR AE +Q + + R+AA + A K V+V +++ +KI +S APP W P++PLGN LPP PTEEMMR+G LG + ++ K
Sbjct: 3 DSSAIPARDRARVELREIESLV-RLLIQYFDLSASGRMPSEDVLQPDR--------IAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLGKVRMDPPK 181
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A7S2ZU48 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU48_9RHOD) HSP 1 Score: 98.2 bits (243), Expect = 1.490e-22 Identity = 50/127 (39.37%), Postives = 81/127 (63.78%), Query Frame = 0
Query: 61 QIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
+I ++L+ + K + ++++HQ +N +IE++R + E+ K+ LG LR AE +Q + + R+AA + A K V+V +++ +KI +S APP W P++PLGN LPP PTEEMMR+G LG
Sbjct: 20 RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLG 144
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A1X6P309 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P309_PORUM) HSP 1 Score: 100 bits (249), Expect = 4.610e-21 Identity = 63/182 (34.62%), Postives = 90/182 (49.45%), Query Frame = 0
Query: 8 SNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAM 189
++VP+RDRAR LRECRSL++ LF A D L +E V + + Q+ME +++ EHQR I L Q ALD A+PRL A + RP+ V +I+ G++++ ++ APPGW P QPLG S+PP T+E M G+L A+
Sbjct: 100 ASVPVRDRARTVLRECRSLVARLFEA-VDALVGGRMSSEAVMQPE--------QVMEAXXXXXXXXXXXXDELTEHQRTAATIARLTAXXXXXXXXXXXXXXXXXXXXXXXQGALDAARPRLVAAAASAARPLPVPALIAAGARLAPAIAAPPGWAPPQPLGGSVPPAVTDEAMWGGRLAAL 272
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A1B6DGF2 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DGF2_9HEMI) HSP 1 Score: 71.6 bits (174), Expect = 1.410e-11 Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 0
Query: 58 ESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMD 190
E + + E LV++ + E ++N ++ L+ +D I L L+ AE V+ A+ +A+ +L A RANKRPV +E+I + +ISAS +CAP W P P P PT+ MR G LG M+
Sbjct: 44 EQLHLTELLVSKDNELKEMLNLASEQAKINQKMDILKAEVEQQDQDIQQLQRQLKEAEQVLATAIFQARQKLQAINRANKRPVPSEELIKFAHRISASNAVCAPLTWQPGDPRR----PYPTDIEMRLGFLGRMN 174
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A444SYH5 (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SYH5_ARMVU) HSP 1 Score: 65.1 bits (157), Expect = 2.700e-9 Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = 0
Query: 25 SLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISA--SLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
SL+ ++ + +LL+ N + +R +NE Q+++ L+ + + ++ E + GI+E ++ + I L L A + AL +A+ +L + RANKRPV+ +E+I Y +IS+ S+ AP W P P PT+ MRAG LG
Sbjct: 12 SLLDDVELITRELLE-----NSVAPKPQRLSSNEQTQLIQLLLTKDEELKETMKVAGEQAVVAGIMESVQAEVDKHEMMIVQLEKQLYEAAHTLSVALYQARQKLDSISRANKRPVNSEELIKYAHRISSTYSVAAPTNWQQGDPRR----PYPTDHEMRAGFLG 167
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A423SZI8 (Mediator of RNA polymerase II transcription subunit 4 n=6 Tax=Penaeus TaxID=133894 RepID=A0A423SZI8_PENVA) HSP 1 Score: 64.3 bits (155), Expect = 5.610e-9 Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 0
Query: 25 SLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
SLI + + +LL+ N +A+R ++ Q++E L+ + I+ + R+ I+E ++ D I L L A + AL +A+ +L + RANKRPV+ +E+I Y +IS++ + AP W P P PT+ MRAG LG
Sbjct: 12 SLIDDTELISKELLE-----NSIAPKAQRLSAHDQAQLIELLIHKDTELKETIKLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 167
BLAST of Ggra2904.t1 vs. uniprot
Match: mediator of RNA polymerase II transcription subunit 4-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6E048 (mediator of RNA polymerase II transcription subunit 4-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6E048) HSP 1 Score: 60.5 bits (145), Expect = 1.160e-7 Identity = 51/174 (29.31%), Postives = 85/174 (48.85%), Query Frame = 0
Query: 25 SLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLV---AQVKSFHAAIEQVLEHQ------RLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
SLI + + +LL+ N +A+R +++ Q++E L+ ++K + A + + Q R+ I+E ++ D I L L A + AL +A+ +L + RANKRPV+ +E+I Y +IS++ + AP W P P PT+ MRAG LG
Sbjct: 12 SLIDDTELISKELLE-----NSIAPKAQRLSSHDQAQLIELLIHKDTELKENYKASKNTITRQLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 176
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A4Y7NJ60 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Moina brachiata TaxID=675436 RepID=A0A4Y7NJ60_9CRUS) HSP 1 Score: 58.9 bits (141), Expect = 5.080e-7 Identity = 40/143 (27.97%), Postives = 74/143 (51.75%), Query Frame = 0
Query: 49 KRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAM 189
++ ++ I+ + Q++E L+ + ++ E L + L D +I +L L+ AE ++ A+ +AK +L + +AN++PV+ +E+I + +ISAS +CAP W G+ P PT+ MR G LG +
Sbjct: 33 QKQQKPISTDHSQLVELLLQKDAELKTNLKLAEEQGVLQQKVVALETEVEHHDVEIRNLQKQLKEAEQLLATAIFQAKQKLQSIAKANRKPVNSEELIKFAHRISASNAVCAPLTWQ----QGDMRRPYPTDIEMRLGFLGRL 171 The following BLAST results are available for this feature:
BLAST of Ggra2904.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Ggra2904.t1 ID=Ggra2904.t1|Name=Ggra2904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
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