Ggra2904.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2904.t1
Unique NameGgra2904.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length206
Homology
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A2V3J6B5 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B5_9FLOR)

HSP 1 Score: 321 bits (822), Expect = 1.690e-109
Identity = 170/206 (82.52%), Postives = 184/206 (89.32%), Query Frame = 0
Query:    1 MVFKNEASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKR---AKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMDIEAEKGGESPEKA 203
            MV  N ASNVPIRDRARDELRECRSLIS+LFVAQA+LLKS+ T ++D KR    KRD T ESVQIMEKLV QVKSFH+ +EQVLEHQRL+GIIEELRKANSVEDAKIAHLGANLRAAESV+QN+LDEAKPRLAAFKRANKRP+DVDEVISYGSKISASL AP GWDPSQPLGN LPP PTEEMMRAGKLGA+++E EKG E  EKA
Sbjct:    1 MVQHNHASNVPIRDRARDELRECRSLISSLFVAQANLLKSISTASDDGKRIKDTKRDPTQESVQIMEKLVTQVKSFHSVMEQVLEHQRLHGIIEELRKANSVEDAKIAHLGANLRAAESVLQNSLDEAKPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPSQPLGNFLPPAPTEEMMRAGKLGAVEMEEEKGAELSEKA 206          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A7S0BGG5 (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGG5_9RHOD)

HSP 1 Score: 122 bits (306), Expect = 1.280e-31
Identity = 70/183 (38.25%), Postives = 109/183 (59.56%), Query Frame = 0
Query:    5 NEASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
            +++S +P RDRAR ELRE  SL+  L +   DL  S     EDV +  R        I ++L+ + K   + ++++++HQ +N +IE++R +   E+ K+  LG  LR AE  +Q    + + R+AA + A K  V+V +++   +KI +S  APP W P++PLGN LPP P EEMMR+G LG
Sbjct:    2 DDSSAIPARDRARVELREFESLV-RLLIQYFDLSASGRMPGEDVLQPDR--------IAQELIERQKVLRSIVDELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLRGAELCLQGPDIDHEARIAALEGAKK--VNVKDIVELAAKIGSSYAAPPNWTPTEPLGNHLPPAPPEEMMRSGHLG 173          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A7S2ZT46 (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT46_9RHOD)

HSP 1 Score: 121 bits (304), Expect = 1.560e-30
Identity = 72/190 (37.89%), Postives = 112/190 (58.95%), Query Frame = 0
Query:    6 EASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMDIEAEK 195
            ++S +P RDRAR ELRE  SL+  L +   DL  S    +EDV +  R        I ++L+ + K   +   ++++HQ +N +IE++R +   E+ K+  LG  LR AE  +Q    + + R+AA + A K  V+V +++   +KI +S  APP W P++PLGN LPP PTEEMMR+G LG + ++  K
Sbjct:    3 DSSAIPARDRARVELREIESLV-RLLIQYFDLSASGRMPSEDVLQPDR--------IAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLGKVRMDPPK 181          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A7S2ZU48 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU48_9RHOD)

HSP 1 Score: 98.2 bits (243), Expect = 1.490e-22
Identity = 50/127 (39.37%), Postives = 81/127 (63.78%), Query Frame = 0
Query:   61 QIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
            +I ++L+ + K   +   ++++HQ +N +IE++R +   E+ K+  LG  LR AE  +Q    + + R+AA + A K  V+V +++   +KI +S  APP W P++PLGN LPP PTEEMMR+G LG
Sbjct:   20 RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLG 144          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A1X6P309 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P309_PORUM)

HSP 1 Score: 100 bits (249), Expect = 4.610e-21
Identity = 63/182 (34.62%), Postives = 90/182 (49.45%), Query Frame = 0
Query:    8 SNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAM 189
            ++VP+RDRAR  LRECRSL++ LF A  D L      +E V + +        Q+ME             +++ EHQR    I  L                         Q ALD A+PRL A   +  RP+ V  +I+ G++++ ++ APPGW P QPLG S+PP  T+E M  G+L A+
Sbjct:  100 ASVPVRDRARTVLRECRSLVARLFEA-VDALVGGRMSSEAVMQPE--------QVMEAXXXXXXXXXXXXDELTEHQRTAATIARLTAXXXXXXXXXXXXXXXXXXXXXXXQGALDAARPRLVAAAASAARPLPVPALIAAGARLAPAIAAPPGWAPPQPLGGSVPPAVTDEAMWGGRLAAL 272          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A1B6DGF2 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DGF2_9HEMI)

HSP 1 Score: 71.6 bits (174), Expect = 1.410e-11
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 0
Query:   58 ESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMD 190
            E + + E LV++       +    E  ++N  ++ L+     +D  I  L   L+ AE V+  A+ +A+ +L A  RANKRPV  +E+I +  +ISAS  +CAP  W P  P      P PT+  MR G LG M+
Sbjct:   44 EQLHLTELLVSKDNELKEMLNLASEQAKINQKMDILKAEVEQQDQDIQQLQRQLKEAEQVLATAIFQARQKLQAINRANKRPVPSEELIKFAHRISASNAVCAPLTWQPGDPRR----PYPTDIEMRLGFLGRMN 174          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A444SYH5 (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SYH5_ARMVU)

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-9
Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = 0
Query:   25 SLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISA--SLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
            SL+ ++ +   +LL+     N    + +R  +NE  Q+++ L+ + +     ++   E   + GI+E ++      +  I  L   L  A   +  AL +A+ +L +  RANKRPV+ +E+I Y  +IS+  S+ AP  W    P      P PT+  MRAG LG
Sbjct:   12 SLLDDVELITRELLE-----NSVAPKPQRLSSNEQTQLIQLLLTKDEELKETMKVAGEQAVVAGIMESVQAEVDKHEMMIVQLEKQLYEAAHTLSVALYQARQKLDSISRANKRPVNSEELIKYAHRISSTYSVAAPTNWQQGDPRR----PYPTDHEMRAGFLG 167          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A423SZI8 (Mediator of RNA polymerase II transcription subunit 4 n=6 Tax=Penaeus TaxID=133894 RepID=A0A423SZI8_PENVA)

HSP 1 Score: 64.3 bits (155), Expect = 5.610e-9
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 0
Query:   25 SLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
            SLI +  +   +LL+     N    +A+R   ++  Q++E L+ +       I+   +  R+  I+E ++      D  I  L   L  A   +  AL +A+ +L +  RANKRPV+ +E+I Y  +IS++  + AP  W    P      P PT+  MRAG LG
Sbjct:   12 SLIDDTELISKELLE-----NSIAPKAQRLSAHDQAQLIELLIHKDTELKETIKLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 167          
BLAST of Ggra2904.t1 vs. uniprot
Match: mediator of RNA polymerase II transcription subunit 4-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6E048 (mediator of RNA polymerase II transcription subunit 4-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6E048)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-7
Identity = 51/174 (29.31%), Postives = 85/174 (48.85%), Query Frame = 0
Query:   25 SLISNLFVAQADLLKSVPTGNEDVKRAKRDITNESVQIMEKLV---AQVKSFHAAIEQVLEHQ------RLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLG 187
            SLI +  +   +LL+     N    +A+R  +++  Q++E L+    ++K  + A +  +  Q      R+  I+E ++      D  I  L   L  A   +  AL +A+ +L +  RANKRPV+ +E+I Y  +IS++  + AP  W    P      P PT+  MRAG LG
Sbjct:   12 SLIDDTELISKELLE-----NSIAPKAQRLSSHDQAQLIELLIHKDTELKENYKASKNTITRQLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 176          
BLAST of Ggra2904.t1 vs. uniprot
Match: A0A4Y7NJ60 (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Moina brachiata TaxID=675436 RepID=A0A4Y7NJ60_9CRUS)

HSP 1 Score: 58.9 bits (141), Expect = 5.080e-7
Identity = 40/143 (27.97%), Postives = 74/143 (51.75%), Query Frame = 0
Query:   49 KRAKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGSKISAS--LCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAM 189
            ++ ++ I+ +  Q++E L+ +       ++   E   L   +  L       D +I +L   L+ AE ++  A+ +AK +L +  +AN++PV+ +E+I +  +ISAS  +CAP  W      G+   P PT+  MR G LG +
Sbjct:   33 QKQQKPISTDHSQLVELLLQKDAELKTNLKLAEEQGVLQQKVVALETEVEHHDVEIRNLQKQLKEAEQLLATAIFQAKQKLQSIAKANRKPVNSEELIKFAHRISASNAVCAPLTWQ----QGDMRRPYPTDIEMRLGFLGRL 171          
The following BLAST results are available for this feature:
BLAST of Ggra2904.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2V3J6B51.690e-10982.52Mediator of RNA polymerase II transcription subuni... [more]
A0A7S0BGG51.280e-3138.25Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZT461.560e-3037.89Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZU481.490e-2239.37Mediator of RNA polymerase II transcription subuni... [more]
A0A1X6P3094.610e-2134.62Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1B6DGF21.410e-1134.07Mediator of RNA polymerase II transcription subuni... [more]
A0A444SYH52.700e-929.09Mediator of RNA polymerase II transcription subuni... [more]
A0A423SZI85.610e-929.70Mediator of RNA polymerase II transcription subuni... [more]
mediator of RNA polymerase II transcription subunit 4-like n=1 Tax=Penaeus monodon TaxID=6687 RepID=UPI0018A6E0481.160e-729.31mediator of RNA polymerase II transcription subuni... [more]
A0A4Y7NJ605.080e-727.97Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..205
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 61..202
e-value: 1.7E-19
score: 70.3
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 7..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:370716..371509 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2904.t1Ggra2904.t1Gracilaria gracilis GNS1m malemRNAtig00000858_pilon 370716..371509 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2904.t1 ID=Ggra2904.t1|Name=Ggra2904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=206bp
MVFKNEASNVPIRDRARDELRECRSLISNLFVAQADLLKSVPTGNEDVKR
AKRDITNESVQIMEKLVAQVKSFHAAIEQVLEHQRLNGIIEELRKANSVE
DAKIAHLGANLRAAESVMQNALDEAKPRLAAFKRANKRPVDVDEVISYGS
KISASLCAPPGWDPSQPLGNSLPPGPTEEMMRAGKLGAMDIEAEKGGESP
EKAST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4