Ggra4893.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4893.t1
Unique NameGgra4893.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000856_piloncontigtig00000856_pilon:287263..287919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_12289T0
Preferred nameRHCG
PFAMsAmmonium_transp
Max annot lvl2759|Eukaryota
KEGG koko:K06579,ko:K06580,ko:K14427,ko:K15502
KEGG TC1.A.11.4,1.A.11.4.3,2.A.30.5
GOsGO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006873,GO:0006885,GO:0007275,GO:0008092,GO:0008150,GO:0008324,GO:0008519,GO:0009888,GO:0009925,GO:0009987,GO:0012506,GO:0014731,GO:0015075,GO:0015238,GO:0015267,GO:0015669,GO:0015670,GO:0015672,GO:0015695,GO:0015696,GO:0015701,GO:0015711,GO:0015837,GO:0015893,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0019725,GO:0019755,GO:0022803,GO:0022840,GO:0022842,GO:0022857,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030506,GO:0030659,GO:0030855,GO:0031090,GO:0031224,GO:0031225,GO:0031226,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0034101,GO:0034220,GO:0035378,GO:0035379,GO:0042221,GO:0042493,GO:0042592,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045178,GO:0046658,GO:0048468,GO:0048513,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048871,GO:0048872,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055065,GO:0055067,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0060586,GO:0061515,GO:0065007,GO:0065008,GO:0070633,GO:0070634,GO:0071702,GO:0071705,GO:0071944,GO:0072488,GO:0097272,GO:0097708,GO:0098590,GO:0098655,GO:0098771
Evalue1.49e-09
EggNOG OGsKOG0498@1|root,KOG3796@1|root,KOG0498@2759|Eukaryota,KOG3796@2759|Eukaryota
Descriptionammonium transmembrane transporter activity
COG categoryU
BRITEko00000,ko01009,ko02000,ko03400,ko04090
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4893Ggra4893Gracilaria gracilis GNS1m malegenetig00000856_pilon 287263..287919 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4893.t1.stop1Ggra4893.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000856_pilon 287263..287265 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4893.t1.CDS1Ggra4893.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000856_pilon 287263..287919 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4893.t1.exon1Ggra4893.t1.exon1Gracilaria gracilis GNS1m maleexontig00000856_pilon 287263..287919 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4893.t1.start1Ggra4893.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000856_pilon 287917..287919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4893.t1Ggra4893.t1Gracilaria gracilis GNS1m malepolypeptidetig00000856_pilon 287263..287919 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4893.t1 ID=Ggra4893.t1|Name=Ggra4893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MPGGDLHKAAKRGDLRQVKRLAHDLEVDSPGKDGHTALMYAARNGHSTVV
EALVAEGVDINATDDFGVTPLLYATRERRAHVVQALLVRGANVNQTKAFG
AVLHVAASMGSVEIVEGMLAHGAEIDSTDDEGNTPLHKAASAIEDRAALC
LWRAGTDTFKRNHEKHTPLSLLHEHSDVPEKMWTEPSLFRFLPSPQIAEL
REKFLDLVSSSQSGEKKQ*
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spliced messenger RNA

>Ggra4893.t1 ID=Ggra4893.t1|Name=Ggra4893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000856_pilon:287263..287919- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGGCGGCGATTTGCACAAAGCCGCAAAGCGCGGCGATTTGCGACA
AGTGAAGAGGCTTGCACACGATCTGGAGGTAGACAGCCCGGGAAAGGATG
GTCACACCGCATTGATGTATGCGGCTCGTAATGGTCACTCCACTGTCGTC
GAAGCGCTGGTAGCAGAGGGAGTGGATATAAACGCCACCGATGATTTTGG
CGTTACGCCATTGCTCTATGCCACTCGAGAAAGACGTGCACATGTAGTGC
AAGCGCTGTTAGTCCGCGGCGCCAACGTCAACCAAACAAAGGCTTTCGGC
GCCGTTTTGCACGTAGCCGCTTCAATGGGAAGCGTCGAAATAGTAGAAGG
GATGCTGGCCCACGGAGCTGAAATTGACAGCACTGACGATGAAGGTAATA
CGCCGCTTCACAAAGCTGCCAGTGCCATCGAAGATCGCGCGGCGCTCTGT
CTCTGGCGCGCTGGCACTGACACGTTCAAAAGGAACCACGAAAAACATAC
CCCTCTGTCGCTGCTGCATGAGCACAGCGATGTGCCAGAGAAGATGTGGA
CCGAGCCGTCTCTCTTCCGTTTCCTTCCTTCCCCGCAGATTGCAGAACTG
CGGGAGAAGTTTCTTGATCTTGTCTCTAGCTCCCAATCTGGGGAAAAAAA
ACAATGA
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protein sequence of Ggra4893.t1

>Ggra4893.t1 ID=Ggra4893.t1|Name=Ggra4893.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MPGGDLHKAAKRGDLRQVKRLAHDLEVDSPGKDGHTALMYAARNGHSTVV
EALVAEGVDINATDDFGVTPLLYATRERRAHVVQALLVRGANVNQTKAFG
AVLHVAASMGSVEIVEGMLAHGAEIDSTDDEGNTPLHKAASAIEDRAALC
LWRAGTDTFKRNHEKHTPLSLLHEHSDVPEKMWTEPSLFRFLPSPQIAEL
REKFLDLVSSSQSGEKKQ*
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mRNA from alignment at tig00000856_pilon:287263..287919-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4893.t1 ID=Ggra4893.t1|Name=Ggra4893.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000856_pilon:287263..287919- (Gracilaria gracilis GNS1m male)
ATGCCCGGCGGCGATTTGCACAAAGCCGCAAAGCGCGGCGATTTGCGACA
AGTGAAGAGGCTTGCACACGATCTGGAGGTAGACAGCCCGGGAAAGGATG
GTCACACCGCATTGATGTATGCGGCTCGTAATGGTCACTCCACTGTCGTC
GAAGCGCTGGTAGCAGAGGGAGTGGATATAAACGCCACCGATGATTTTGG
CGTTACGCCATTGCTCTATGCCACTCGAGAAAGACGTGCACATGTAGTGC
AAGCGCTGTTAGTCCGCGGCGCCAACGTCAACCAAACAAAGGCTTTCGGC
GCCGTTTTGCACGTAGCCGCTTCAATGGGAAGCGTCGAAATAGTAGAAGG
GATGCTGGCCCACGGAGCTGAAATTGACAGCACTGACGATGAAGGTAATA
CGCCGCTTCACAAAGCTGCCAGTGCCATCGAAGATCGCGCGGCGCTCTGT
CTCTGGCGCGCTGGCACTGACACGTTCAAAAGGAACCACGAAAAACATAC
CCCTCTGTCGCTGCTGCATGAGCACAGCGATGTGCCAGAGAAGATGTGGA
CCGAGCCGTCTCTCTTCCGTTTCCTTCCTTCCCCGCAGATTGCAGAACTG
CGGGAGAAGTTTCTTGATCTTGTCTCTAGCTCCCAATCTGGGGAAAAAAA
ACAATGA
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Coding sequence (CDS) from alignment at tig00000856_pilon:287263..287919-

>Ggra4893.t1 ID=Ggra4893.t1|Name=Ggra4893.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000856_pilon:287263..287919- (Gracilaria gracilis GNS1m male)
ATGCCCGGCGGCGATTTGCACAAAGCCGCAAAGCGCGGCGATTTGCGACA
AGTGAAGAGGCTTGCACACGATCTGGAGGTAGACAGCCCGGGAAAGGATG
GTCACACCGCATTGATGTATGCGGCTCGTAATGGTCACTCCACTGTCGTC
GAAGCGCTGGTAGCAGAGGGAGTGGATATAAACGCCACCGATGATTTTGG
CGTTACGCCATTGCTCTATGCCACTCGAGAAAGACGTGCACATGTAGTGC
AAGCGCTGTTAGTCCGCGGCGCCAACGTCAACCAAACAAAGGCTTTCGGC
GCCGTTTTGCACGTAGCCGCTTCAATGGGAAGCGTCGAAATAGTAGAAGG
GATGCTGGCCCACGGAGCTGAAATTGACAGCACTGACGATGAAGGTAATA
CGCCGCTTCACAAAGCTGCCAGTGCCATCGAAGATCGCGCGGCGCTCTGT
CTCTGGCGCGCTGGCACTGACACGTTCAAAAGGAACCACGAAAAACATAC
CCCTCTGTCGCTGCTGCATGAGCACAGCGATGTGCCAGAGAAGATGTGGA
CCGAGCCGTCTCTCTTCCGTTTCCTTCCTTCCCCGCAGATTGCAGAACTG
CGGGAGAAGTTTCTTGATCTTGTCTCTAGCTCCCAATCTGGGGAAAAAAA
ACAATGA
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