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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 109760.SPPG_06075T0 |
| Preferred name | DBP4 |
| PFAMs | DEAD,DUF4217,Helicase_C |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K14776 |
| GOs | GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360,GO:1990904 |
| Evalue | 1.02e-165 |
| EggNOG OGs | COG0513@1|root,KOG0343@2759|Eukaryota,38EK9@33154|Opisthokonta,3NU3N@4751|Fungi |
| EC | 3.6.4.13 |
| Description | RNA helicase |
| COG category | A |
| BRITE | ko00000,ko01000,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4149.t1.start1 | Ggra4149.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000853_pilon 390947..390949 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra4149.t1.stop1 | Ggra4149.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000853_pilon 393341..393343 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra4149.t1 ID=Ggra4149.t1|Name=Ggra4149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=799bp MAGSKRSRSGRKRVNPVPNKVSARQREEAEIARVEHSLKDIPRYSDRFQL FRVNRRQRAKQIIAESEKDKDVPVEHQIFKATGFAEIPLSSRTLDGLAAA NFTELTGIQRTSIPQALAGRDILAAAPTGSGKTLAFLIPVLEVLWRKKWN TMDGLGALILSPTRELGIQIFEVLRSVGRQHTLSAGLVIGGKDFEGEREK VARMNVLVATPGRLLHHMDHVAEFDCSNVQVLVLDEADRILDLGFAKTLD AILANLPRDRQTMLFSATQTKNVKALARLSLKNPEYVAVGNGLKQSAKND ENDFKGQKEGREQEESNVVSIVGTPQGLTQTYAVMPAHEKLSVLWSFIKT HLKSKMIVFLATGKQVRFVFETFCKLRPGMSLLHIHGNMKQLKRTDMYDL FCRTRSAVLFATDVASRGLDFPDVEWVIQVDCPDDVGTYVHRVGRTARFR SQGRAMLFISEGPEETFLKHLEAKDVRLRQTKTNPQRMTDITPKISATVA SNQELKKLAQRAFMFYMKSVYQQSDKQVFNVTKVDYEKLAKSYGLSNIPR VSIRSESSDHRHKKMKSTTVFGYRVMQHKKVQQQTATVMEDSENDDLLTV RKDGSSEIPDDVDTSDYQSSLLRIENGRGKRKKRKLDLVGNLPSANRLVF TEDGLAMRAGDIVDTSSGEEENDIEHNGIDDYATFVSRRLTKAAAEDRKA EKERVQSLHFRRKAKERGRNKALNDRSADTATSPNSSDSERNGDSPSEYG DPSVSDSSHSTSNERTKDRDSTKADEVKALMILQARNKETRTNVRKYT* back to topspliced messenger RNA >Ggra4149.t1 ID=Ggra4149.t1|Name=Ggra4149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2397bp|location=Sequence derived from alignment at tig00000853_pilon:390947..393343+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCAGGCTCTAAGAGAAGCAGAAGTGGAAGAAAACGGGTAAACCCGGT TCCGAACAAGGTTTCCGCAAGGCAAAGGGAAGAAGCCGAAATTGCTCGAG TTGAACATTCCCTTAAAGACATACCTCGATATTCTGACCGGTTTCAGCTG TTCCGTGTAAACAGAAGACAGAGAGCGAAACAGATCATAGCAGAGAGTGA GAAAGATAAAGATGTACCAGTGGAGCATCAAATCTTCAAAGCAACGGGCT TCGCTGAAATCCCATTGTCTTCTCGAACCCTGGATGGGCTTGCAGCGGCG AATTTTACAGAGCTCACAGGAATTCAGAGGACTTCCATTCCTCAAGCCCT GGCTGGAAGAGATATTCTAGCAGCAGCTCCAACAGGTTCTGGGAAAACTC TTGCTTTTTTGATTCCAGTATTGGAGGTTCTATGGCGAAAGAAGTGGAAC ACAATGGATGGTCTTGGGGCCCTCATTCTTAGTCCAACTCGTGAACTCGG AATCCAAATATTCGAAGTTCTTCGTTCAGTTGGACGACAGCATACACTTT CAGCGGGTTTGGTTATTGGCGGGAAAGACTTTGAAGGAGAACGTGAAAAA GTCGCACGCATGAATGTCCTTGTGGCTACGCCTGGACGGCTTTTGCACCA TATGGATCACGTTGCCGAGTTTGACTGTTCAAATGTGCAAGTCCTAGTAC TAGACGAAGCGGACAGAATTTTGGACTTGGGCTTTGCTAAGACACTAGAT GCGATTCTTGCGAACTTGCCTAGGGATCGACAGACTATGCTGTTTTCCGC AACTCAAACAAAGAATGTGAAGGCACTTGCTCGGTTATCGCTGAAAAACC CTGAATATGTTGCGGTTGGTAATGGACTGAAACAAAGTGCTAAAAACGAT GAGAACGACTTCAAGGGACAGAAGGAAGGAAGGGAACAAGAGGAATCGAA TGTCGTAAGCATTGTAGGTACCCCTCAAGGGTTAACACAAACTTATGCGG TAATGCCAGCTCATGAAAAGCTTTCAGTGCTATGGTCGTTTATAAAAACT CACCTGAAGTCGAAGATGATAGTGTTCCTTGCCACGGGAAAGCAAGTTCG GTTTGTCTTTGAGACGTTTTGCAAGTTGCGGCCAGGGATGTCTCTTCTCC ATATACATGGAAACATGAAGCAACTTAAGCGGACAGATATGTACGACCTA TTCTGCCGTACGAGGTCTGCGGTTCTGTTCGCCACTGACGTTGCCAGTCG TGGCCTTGACTTCCCGGACGTAGAATGGGTTATTCAGGTAGACTGCCCTG ACGACGTGGGAACGTATGTTCATCGTGTTGGCAGAACGGCCAGGTTTAGG TCGCAAGGTCGAGCGATGCTCTTCATCAGTGAAGGCCCTGAGGAAACCTT CTTGAAACACCTTGAAGCAAAAGATGTGCGGCTTCGGCAAACCAAAACCA ATCCGCAACGCATGACTGATATTACACCCAAGATATCTGCGACAGTGGCA TCGAACCAAGAGCTGAAGAAGCTTGCTCAAAGGGCGTTTATGTTCTATAT GAAGTCAGTTTATCAACAGAGCGACAAGCAAGTGTTCAATGTGACCAAGG TCGATTACGAAAAACTTGCCAAGAGCTATGGGTTGTCGAATATACCTAGA GTTTCAATAAGAAGCGAATCATCAGATCATCGACACAAAAAGATGAAGTC AACCACGGTGTTTGGATACAGAGTCATGCAACACAAGAAGGTACAACAGC AAACCGCAACAGTCATGGAGGACAGTGAAAACGACGACTTACTAACGGTC CGGAAAGATGGAAGTAGCGAGATTCCTGACGATGTTGACACTTCTGATTA CCAAAGTTCACTGTTAAGAATCGAAAATGGAAGGGGAAAACGAAAGAAGA GGAAGCTCGACCTGGTCGGAAATCTACCGAGCGCCAACAGATTGGTATTC ACGGAAGATGGTCTAGCCATGCGAGCTGGGGACATTGTAGACACTTCATC TGGTGAGGAAGAAAATGATATTGAGCATAATGGAATCGACGATTATGCGA CCTTCGTTTCAAGGAGGTTGACAAAGGCGGCTGCAGAGGATAGAAAAGCC GAAAAAGAACGGGTACAGTCTCTGCATTTCCGTCGAAAAGCCAAAGAAAG GGGCCGAAACAAGGCTCTTAATGATCGGTCGGCGGATACAGCAACCTCTC CAAACTCTAGTGACAGTGAGCGCAACGGAGACTCGCCTTCAGAATACGGG GATCCTAGTGTTTCAGACTCAAGTCATTCAACTTCGAATGAAAGAACGAA GGATCGGGATTCTACAAAAGCCGATGAAGTGAAAGCTTTGATGATTCTTC AAGCTAGGAACAAAGAGACTAGAACGAACGTGAGAAAGTATACATAG back to topprotein sequence of Ggra4149.t1 >Ggra4149.t1 ID=Ggra4149.t1|Name=Ggra4149.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=799bp
MAGSKRSRSGRKRVNPVPNKVSARQREEAEIARVEHSLKDIPRYSDRFQL FRVNRRQRAKQIIAESEKDKDVPVEHQIFKATGFAEIPLSSRTLDGLAAA NFTELTGIQRTSIPQALAGRDILAAAPTGSGKTLAFLIPVLEVLWRKKWN TMDGLGALILSPTRELGIQIFEVLRSVGRQHTLSAGLVIGGKDFEGEREK VARMNVLVATPGRLLHHMDHVAEFDCSNVQVLVLDEADRILDLGFAKTLD AILANLPRDRQTMLFSATQTKNVKALARLSLKNPEYVAVGNGLKQSAKND ENDFKGQKEGREQEESNVVSIVGTPQGLTQTYAVMPAHEKLSVLWSFIKT HLKSKMIVFLATGKQVRFVFETFCKLRPGMSLLHIHGNMKQLKRTDMYDL FCRTRSAVLFATDVASRGLDFPDVEWVIQVDCPDDVGTYVHRVGRTARFR SQGRAMLFISEGPEETFLKHLEAKDVRLRQTKTNPQRMTDITPKISATVA SNQELKKLAQRAFMFYMKSVYQQSDKQVFNVTKVDYEKLAKSYGLSNIPR VSIRSESSDHRHKKMKSTTVFGYRVMQHKKVQQQTATVMEDSENDDLLTV RKDGSSEIPDDVDTSDYQSSLLRIENGRGKRKKRKLDLVGNLPSANRLVF TEDGLAMRAGDIVDTSSGEEENDIEHNGIDDYATFVSRRLTKAAAEDRKA EKERVQSLHFRRKAKERGRNKALNDRSADTATSPNSSDSERNGDSPSEYG DPSVSDSSHSTSNERTKDRDSTKADEVKALMILQARNKETRTNVRKYT* back to topmRNA from alignment at tig00000853_pilon:390947..393343+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra4149.t1 ID=Ggra4149.t1|Name=Ggra4149.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2397bp|location=Sequence derived from alignment at tig00000853_pilon:390947..393343+ (Gracilaria gracilis GNS1m male) ATGGCAGGCTCTAAGAGAAGCAGAAGTGGAAGAAAACGGGTAAACCCGGT
TCCGAACAAGGTTTCCGCAAGGCAAAGGGAAGAAGCCGAAATTGCTCGAG
TTGAACATTCCCTTAAAGACATACCTCGATATTCTGACCGGTTTCAGCTG
TTCCGTGTAAACAGAAGACAGAGAGCGAAACAGATCATAGCAGAGAGTGA
GAAAGATAAAGATGTACCAGTGGAGCATCAAATCTTCAAAGCAACGGGCT
TCGCTGAAATCCCATTGTCTTCTCGAACCCTGGATGGGCTTGCAGCGGCG
AATTTTACAGAGCTCACAGGAATTCAGAGGACTTCCATTCCTCAAGCCCT
GGCTGGAAGAGATATTCTAGCAGCAGCTCCAACAGGTTCTGGGAAAACTC
TTGCTTTTTTGATTCCAGTATTGGAGGTTCTATGGCGAAAGAAGTGGAAC
ACAATGGATGGTCTTGGGGCCCTCATTCTTAGTCCAACTCGTGAACTCGG
AATCCAAATATTCGAAGTTCTTCGTTCAGTTGGACGACAGCATACACTTT
CAGCGGGTTTGGTTATTGGCGGGAAAGACTTTGAAGGAGAACGTGAAAAA
GTCGCACGCATGAATGTCCTTGTGGCTACGCCTGGACGGCTTTTGCACCA
TATGGATCACGTTGCCGAGTTTGACTGTTCAAATGTGCAAGTCCTAGTAC
TAGACGAAGCGGACAGAATTTTGGACTTGGGCTTTGCTAAGACACTAGAT
GCGATTCTTGCGAACTTGCCTAGGGATCGACAGACTATGCTGTTTTCCGC
AACTCAAACAAAGAATGTGAAGGCACTTGCTCGGTTATCGCTGAAAAACC
CTGAATATGTTGCGGTTGGTAATGGACTGAAACAAAGTGCTAAAAACGAT
GAGAACGACTTCAAGGGACAGAAGGAAGGAAGGGAACAAGAGGAATCGAA
TGTCGTAAGCATTGTAGGTACCCCTCAAGGGTTAACACAAACTTATGCGG
TAATGCCAGCTCATGAAAAGCTTTCAGTGCTATGGTCGTTTATAAAAACT
CACCTGAAGTCGAAGATGATAGTGTTCCTTGCCACGGGAAAGCAAGTTCG
GTTTGTCTTTGAGACGTTTTGCAAGTTGCGGCCAGGGATGTCTCTTCTCC
ATATACATGGAAACATGAAGCAACTTAAGCGGACAGATATGTACGACCTA
TTCTGCCGTACGAGGTCTGCGGTTCTGTTCGCCACTGACGTTGCCAGTCG
TGGCCTTGACTTCCCGGACGTAGAATGGGTTATTCAGGTAGACTGCCCTG
ACGACGTGGGAACGTATGTTCATCGTGTTGGCAGAACGGCCAGGTTTAGG
TCGCAAGGTCGAGCGATGCTCTTCATCAGTGAAGGCCCTGAGGAAACCTT
CTTGAAACACCTTGAAGCAAAAGATGTGCGGCTTCGGCAAACCAAAACCA
ATCCGCAACGCATGACTGATATTACACCCAAGATATCTGCGACAGTGGCA
TCGAACCAAGAGCTGAAGAAGCTTGCTCAAAGGGCGTTTATGTTCTATAT
GAAGTCAGTTTATCAACAGAGCGACAAGCAAGTGTTCAATGTGACCAAGG
TCGATTACGAAAAACTTGCCAAGAGCTATGGGTTGTCGAATATACCTAGA
GTTTCAATAAGAAGCGAATCATCAGATCATCGACACAAAAAGATGAAGTC
AACCACGGTGTTTGGATACAGAGTCATGCAACACAAGAAGGTACAACAGC
AAACCGCAACAGTCATGGAGGACAGTGAAAACGACGACTTACTAACGGTC
CGGAAAGATGGAAGTAGCGAGATTCCTGACGATGTTGACACTTCTGATTA
CCAAAGTTCACTGTTAAGAATCGAAAATGGAAGGGGAAAACGAAAGAAGA
GGAAGCTCGACCTGGTCGGAAATCTACCGAGCGCCAACAGATTGGTATTC
ACGGAAGATGGTCTAGCCATGCGAGCTGGGGACATTGTAGACACTTCATC
TGGTGAGGAAGAAAATGATATTGAGCATAATGGAATCGACGATTATGCGA
CCTTCGTTTCAAGGAGGTTGACAAAGGCGGCTGCAGAGGATAGAAAAGCC
GAAAAAGAACGGGTACAGTCTCTGCATTTCCGTCGAAAAGCCAAAGAAAG
GGGCCGAAACAAGGCTCTTAATGATCGGTCGGCGGATACAGCAACCTCTC
CAAACTCTAGTGACAGTGAGCGCAACGGAGACTCGCCTTCAGAATACGGG
GATCCTAGTGTTTCAGACTCAAGTCATTCAACTTCGAATGAAAGAACGAA
GGATCGGGATTCTACAAAAGCCGATGAAGTGAAAGCTTTGATGATTCTTC
AAGCTAGGAACAAAGAGACTAGAACGAACGTGAGAAAGTATACATAG back to topCoding sequence (CDS) from alignment at tig00000853_pilon:390947..393343+ >Ggra4149.t1 ID=Ggra4149.t1|Name=Ggra4149.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2397bp|location=Sequence derived from alignment at tig00000853_pilon:390947..393343+ (Gracilaria gracilis GNS1m male) ATGGCAGGCTCTAAGAGAAGCAGAAGTGGAAGAAAACGGGTAAACCCGGT TCCGAACAAGGTTTCCGCAAGGCAAAGGGAAGAAGCCGAAATTGCTCGAG TTGAACATTCCCTTAAAGACATACCTCGATATTCTGACCGGTTTCAGCTG TTCCGTGTAAACAGAAGACAGAGAGCGAAACAGATCATAGCAGAGAGTGA GAAAGATAAAGATGTACCAGTGGAGCATCAAATCTTCAAAGCAACGGGCT TCGCTGAAATCCCATTGTCTTCTCGAACCCTGGATGGGCTTGCAGCGGCG AATTTTACAGAGCTCACAGGAATTCAGAGGACTTCCATTCCTCAAGCCCT GGCTGGAAGAGATATTCTAGCAGCAGCTCCAACAGGTTCTGGGAAAACTC TTGCTTTTTTGATTCCAGTATTGGAGGTTCTATGGCGAAAGAAGTGGAAC ACAATGGATGGTCTTGGGGCCCTCATTCTTAGTCCAACTCGTGAACTCGG AATCCAAATATTCGAAGTTCTTCGTTCAGTTGGACGACAGCATACACTTT CAGCGGGTTTGGTTATTGGCGGGAAAGACTTTGAAGGAGAACGTGAAAAA GTCGCACGCATGAATGTCCTTGTGGCTACGCCTGGACGGCTTTTGCACCA TATGGATCACGTTGCCGAGTTTGACTGTTCAAATGTGCAAGTCCTAGTAC TAGACGAAGCGGACAGAATTTTGGACTTGGGCTTTGCTAAGACACTAGAT GCGATTCTTGCGAACTTGCCTAGGGATCGACAGACTATGCTGTTTTCCGC AACTCAAACAAAGAATGTGAAGGCACTTGCTCGGTTATCGCTGAAAAACC CTGAATATGTTGCGGTTGGTAATGGACTGAAACAAAGTGCTAAAAACGAT GAGAACGACTTCAAGGGACAGAAGGAAGGAAGGGAACAAGAGGAATCGAA TGTCGTAAGCATTGTAGGTACCCCTCAAGGGTTAACACAAACTTATGCGG TAATGCCAGCTCATGAAAAGCTTTCAGTGCTATGGTCGTTTATAAAAACT CACCTGAAGTCGAAGATGATAGTGTTCCTTGCCACGGGAAAGCAAGTTCG GTTTGTCTTTGAGACGTTTTGCAAGTTGCGGCCAGGGATGTCTCTTCTCC ATATACATGGAAACATGAAGCAACTTAAGCGGACAGATATGTACGACCTA TTCTGCCGTACGAGGTCTGCGGTTCTGTTCGCCACTGACGTTGCCAGTCG TGGCCTTGACTTCCCGGACGTAGAATGGGTTATTCAGGTAGACTGCCCTG ACGACGTGGGAACGTATGTTCATCGTGTTGGCAGAACGGCCAGGTTTAGG TCGCAAGGTCGAGCGATGCTCTTCATCAGTGAAGGCCCTGAGGAAACCTT CTTGAAACACCTTGAAGCAAAAGATGTGCGGCTTCGGCAAACCAAAACCA ATCCGCAACGCATGACTGATATTACACCCAAGATATCTGCGACAGTGGCA TCGAACCAAGAGCTGAAGAAGCTTGCTCAAAGGGCGTTTATGTTCTATAT GAAGTCAGTTTATCAACAGAGCGACAAGCAAGTGTTCAATGTGACCAAGG TCGATTACGAAAAACTTGCCAAGAGCTATGGGTTGTCGAATATACCTAGA GTTTCAATAAGAAGCGAATCATCAGATCATCGACACAAAAAGATGAAGTC AACCACGGTGTTTGGATACAGAGTCATGCAACACAAGAAGGTACAACAGC AAACCGCAACAGTCATGGAGGACAGTGAAAACGACGACTTACTAACGGTC CGGAAAGATGGAAGTAGCGAGATTCCTGACGATGTTGACACTTCTGATTA CCAAAGTTCACTGTTAAGAATCGAAAATGGAAGGGGAAAACGAAAGAAGA GGAAGCTCGACCTGGTCGGAAATCTACCGAGCGCCAACAGATTGGTATTC ACGGAAGATGGTCTAGCCATGCGAGCTGGGGACATTGTAGACACTTCATC TGGTGAGGAAGAAAATGATATTGAGCATAATGGAATCGACGATTATGCGA CCTTCGTTTCAAGGAGGTTGACAAAGGCGGCTGCAGAGGATAGAAAAGCC GAAAAAGAACGGGTACAGTCTCTGCATTTCCGTCGAAAAGCCAAAGAAAG GGGCCGAAACAAGGCTCTTAATGATCGGTCGGCGGATACAGCAACCTCTC CAAACTCTAGTGACAGTGAGCGCAACGGAGACTCGCCTTCAGAATACGGG GATCCTAGTGTTTCAGACTCAAGTCATTCAACTTCGAATGAAAGAACGAA GGATCGGGATTCTACAAAAGCCGATGAAGTGAAAGCTTTGATGATTCTTC AAGCTAGGAACAAAGAGACTAGAACGAACGTGAGAAAGTATACATAG back to top
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