Ggra10261.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10261.t2
Unique NameGgra10261.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length399
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:243280..244476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706746.1
PFAMsENTH
Max annot lvl2759|Eukaryota
KEGG koko:K12471
KEGG Pathwayko04144,map04144
GOsGO:0000278,GO:0000281,GO:0000331,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005886,GO:0005905,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008104,GO:0008150,GO:0008289,GO:0009653,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0019220,GO:0019222,GO:0022402,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030154,GO:0030276,GO:0030435,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031323,GO:0031399,GO:0031410,GO:0031982,GO:0032268,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0035091,GO:0035303,GO:0035304,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045334,GO:0048475,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051641,GO:0060255,GO:0061640,GO:0065007,GO:0070727,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0097435,GO:0097708,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:1901981,GO:1902936,GO:1903047,GO:1990778
Evalue3.05e-42
EggNOG OGsKOG2056@1|root,KOG2056@2759|Eukaryota
Descriptionlipid binding
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10261Ggra10261Gracilaria gracilis GNS1m malegenetig00000016_pilon 243280..244476 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10261.t2.stop1Ggra10261.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 243280..243282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10261.t2.CDS1Ggra10261.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 243280..244476 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10261.t2.exon1Ggra10261.t2.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 243280..244476 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10261.t2.start1Ggra10261.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 244474..244476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10261.t2Ggra10261.t2Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 243280..244476 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10261.t2 ID=Ggra10261.t2|Name=Ggra10261.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=399bp
MDEISRKIRNIDWKGLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASVTDLHQIAGGTYNPQDYALIMSIIWQRLGSTRWRCVYKGLEVLKY
VVMHGSSRCLAEARGAVGHLEALRSYRKVADGRDVGEGVRNRAALLCDML
ADDELLDSEREKSREIRAKIEAGGAGGSVSSDQYRFQNQMNTGNATVTST
GTATFKGYDDDGTYDDEPAGAFSKLRLEDKKQVDLLGDDDDTTATATNGA
DDDDDDEFDPRGVGSQAKAEATQEDDLLALALSSPDVAPPPALPASNGGM
KTSELIQQLASQRTSALVPVQTQASFESNSFSPPTQPYNAQSAQPAAGSG
FGTFDGFGAGVASPEAKPPAPAPIRLQRKEESDPFGDLLDTAKKSGVV*
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spliced messenger RNA

>Ggra10261.t2 ID=Ggra10261.t2|Name=Ggra10261.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000016_pilon:243280..244476- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAAATATCGCGTAAAATACGCAATATAGACTGGAAGGGGTTGCA
GAAGTCTGCGCGAAAGGTTCAAGCGTCCACTGCTTCAGCATTGAAGGACA
TGGTCATGACAGACCTCGAGAACAAAACGCGTTCCGCCACCGCAGATACG
GCATGGGGAGCGTCTGTCACAGACTTGCATCAAATAGCTGGTGGAACTTA
CAACCCACAGGACTACGCTCTGATCATGTCGATCATTTGGCAACGTCTCG
GTAGTACTCGCTGGAGATGCGTGTACAAAGGTTTGGAAGTCCTGAAATAC
GTCGTCATGCACGGTAGTTCGCGCTGCCTTGCGGAGGCTAGAGGAGCTGT
TGGTCATCTGGAAGCCCTCCGTTCATATCGCAAGGTGGCGGATGGAAGAG
ATGTCGGCGAAGGTGTGCGGAATAGAGCTGCTTTGCTGTGTGACATGCTT
GCAGACGATGAGCTTCTAGACTCGGAGCGCGAAAAGAGTCGTGAGATTCG
CGCCAAGATTGAAGCGGGCGGTGCCGGCGGTTCTGTCAGTAGCGATCAAT
ACCGTTTCCAGAACCAGATGAATACTGGTAATGCTACCGTAACATCCACT
GGTACAGCTACATTCAAGGGCTACGACGACGACGGTACATACGACGACGA
GCCAGCAGGGGCGTTCAGCAAGTTGCGCCTCGAAGACAAGAAGCAGGTTG
ACCTCCTGGGCGACGATGATGACACGACAGCTACTGCTACCAATGGCGCG
GATGATGATGATGATGACGAATTCGATCCACGTGGCGTGGGAAGCCAAGC
AAAGGCAGAAGCTACGCAAGAAGATGATCTTCTCGCACTCGCTCTTTCGT
CACCCGATGTTGCGCCTCCACCGGCCTTGCCTGCATCTAATGGGGGCATG
AAGACCTCAGAACTTATACAACAGCTTGCATCTCAAAGAACAAGTGCTTT
GGTGCCTGTACAGACACAGGCGTCATTTGAGAGCAACTCCTTCAGCCCTC
CTACTCAACCTTACAACGCACAGAGTGCACAACCTGCAGCTGGCTCTGGG
TTTGGTACGTTCGACGGGTTTGGAGCTGGCGTGGCATCACCCGAAGCAAA
ACCGCCAGCACCAGCACCAATAAGGCTACAAAGAAAAGAAGAATCAGACC
CATTCGGAGATTTGTTGGATACTGCGAAAAAGAGCGGAGTCGTATGA
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protein sequence of Ggra10261.t2

>Ggra10261.t2 ID=Ggra10261.t2|Name=Ggra10261.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=399bp
MDEISRKIRNIDWKGLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASVTDLHQIAGGTYNPQDYALIMSIIWQRLGSTRWRCVYKGLEVLKY
VVMHGSSRCLAEARGAVGHLEALRSYRKVADGRDVGEGVRNRAALLCDML
ADDELLDSEREKSREIRAKIEAGGAGGSVSSDQYRFQNQMNTGNATVTST
GTATFKGYDDDGTYDDEPAGAFSKLRLEDKKQVDLLGDDDDTTATATNGA
DDDDDDEFDPRGVGSQAKAEATQEDDLLALALSSPDVAPPPALPASNGGM
KTSELIQQLASQRTSALVPVQTQASFESNSFSPPTQPYNAQSAQPAAGSG
FGTFDGFGAGVASPEAKPPAPAPIRLQRKEESDPFGDLLDTAKKSGVV*
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mRNA from alignment at tig00000016_pilon:243280..244476-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10261.t2 ID=Ggra10261.t2|Name=Ggra10261.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00000016_pilon:243280..244476- (Gracilaria gracilis GNS1m male)
ATGGACGAAATATCGCGTAAAATACGCAATATAGACTGGAAGGGGTTGCA
GAAGTCTGCGCGAAAGGTTCAAGCGTCCACTGCTTCAGCATTGAAGGACA
TGGTCATGACAGACCTCGAGAACAAAACGCGTTCCGCCACCGCAGATACG
GCATGGGGAGCGTCTGTCACAGACTTGCATCAAATAGCTGGTGGAACTTA
CAACCCACAGGACTACGCTCTGATCATGTCGATCATTTGGCAACGTCTCG
GTAGTACTCGCTGGAGATGCGTGTACAAAGGTTTGGAAGTCCTGAAATAC
GTCGTCATGCACGGTAGTTCGCGCTGCCTTGCGGAGGCTAGAGGAGCTGT
TGGTCATCTGGAAGCCCTCCGTTCATATCGCAAGGTGGCGGATGGAAGAG
ATGTCGGCGAAGGTGTGCGGAATAGAGCTGCTTTGCTGTGTGACATGCTT
GCAGACGATGAGCTTCTAGACTCGGAGCGCGAAAAGAGTCGTGAGATTCG
CGCCAAGATTGAAGCGGGCGGTGCCGGCGGTTCTGTCAGTAGCGATCAAT
ACCGTTTCCAGAACCAGATGAATACTGGTAATGCTACCGTAACATCCACT
GGTACAGCTACATTCAAGGGCTACGACGACGACGGTACATACGACGACGA
GCCAGCAGGGGCGTTCAGCAAGTTGCGCCTCGAAGACAAGAAGCAGGTTG
ACCTCCTGGGCGACGATGATGACACGACAGCTACTGCTACCAATGGCGCG
GATGATGATGATGATGACGAATTCGATCCACGTGGCGTGGGAAGCCAAGC
AAAGGCAGAAGCTACGCAAGAAGATGATCTTCTCGCACTCGCTCTTTCGT
CACCCGATGTTGCGCCTCCACCGGCCTTGCCTGCATCTAATGGGGGCATG
AAGACCTCAGAACTTATACAACAGCTTGCATCTCAAAGAACAAGTGCTTT
GGTGCCTGTACAGACACAGGCGTCATTTGAGAGCAACTCCTTCAGCCCTC
CTACTCAACCTTACAACGCACAGAGTGCACAACCTGCAGCTGGCTCTGGG
TTTGGTACGTTCGACGGGTTTGGAGCTGGCGTGGCATCACCCGAAGCAAA
ACCGCCAGCACCAGCACCAATAAGGCTACAAAGAAAAGAAGAATCAGACC
CATTCGGAGATTTGTTGGATACTGCGAAAAAGAGCGGAGTCGTATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:243280..244476-

>Ggra10261.t2 ID=Ggra10261.t2|Name=Ggra10261.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00000016_pilon:243280..244476- (Gracilaria gracilis GNS1m male)
ATGGACGAAATATCGCGTAAAATACGCAATATAGACTGGAAGGGGTTGCA
GAAGTCTGCGCGAAAGGTTCAAGCGTCCACTGCTTCAGCATTGAAGGACA
TGGTCATGACAGACCTCGAGAACAAAACGCGTTCCGCCACCGCAGATACG
GCATGGGGAGCGTCTGTCACAGACTTGCATCAAATAGCTGGTGGAACTTA
CAACCCACAGGACTACGCTCTGATCATGTCGATCATTTGGCAACGTCTCG
GTAGTACTCGCTGGAGATGCGTGTACAAAGGTTTGGAAGTCCTGAAATAC
GTCGTCATGCACGGTAGTTCGCGCTGCCTTGCGGAGGCTAGAGGAGCTGT
TGGTCATCTGGAAGCCCTCCGTTCATATCGCAAGGTGGCGGATGGAAGAG
ATGTCGGCGAAGGTGTGCGGAATAGAGCTGCTTTGCTGTGTGACATGCTT
GCAGACGATGAGCTTCTAGACTCGGAGCGCGAAAAGAGTCGTGAGATTCG
CGCCAAGATTGAAGCGGGCGGTGCCGGCGGTTCTGTCAGTAGCGATCAAT
ACCGTTTCCAGAACCAGATGAATACTGGTAATGCTACCGTAACATCCACT
GGTACAGCTACATTCAAGGGCTACGACGACGACGGTACATACGACGACGA
GCCAGCAGGGGCGTTCAGCAAGTTGCGCCTCGAAGACAAGAAGCAGGTTG
ACCTCCTGGGCGACGATGATGACACGACAGCTACTGCTACCAATGGCGCG
GATGATGATGATGATGACGAATTCGATCCACGTGGCGTGGGAAGCCAAGC
AAAGGCAGAAGCTACGCAAGAAGATGATCTTCTCGCACTCGCTCTTTCGT
CACCCGATGTTGCGCCTCCACCGGCCTTGCCTGCATCTAATGGGGGCATG
AAGACCTCAGAACTTATACAACAGCTTGCATCTCAAAGAACAAGTGCTTT
GGTGCCTGTACAGACACAGGCGTCATTTGAGAGCAACTCCTTCAGCCCTC
CTACTCAACCTTACAACGCACAGAGTGCACAACCTGCAGCTGGCTCTGGG
TTTGGTACGTTCGACGGGTTTGGAGCTGGCGTGGCATCACCCGAAGCAAA
ACCGCCAGCACCAGCACCAATAAGGCTACAAAGAAAAGAAGAATCAGACC
CATTCGGAGATTTGTTGGATACTGCGAAAAAGAGCGGAGTCGTATGA
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