Ggra10236.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10236.t1
Unique NameGgra10236.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:177586..178821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10236Ggra10236Gracilaria gracilis GNS1m malegenetig00000016_pilon 177586..178821 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10236.t1.stop1Ggra10236.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 177586..177588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10236.t1.CDS1Ggra10236.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 177586..178821 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10236.t1.exon1Ggra10236.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 177586..178821 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10236.t1.start1Ggra10236.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 178819..178821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10236.t1Ggra10236.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 177586..178821 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10236.t1 ID=Ggra10236.t1|Name=Ggra10236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=412bp
MASNLRSRAVKFSQDKQYELPSLHVQNRPLKLSVDSYNALVVSVAAFILL
LFGFYSLSLFSANHEIVGLQPPLSLHREIGDHFHKQSNRAGWDDHHYDAP
LENDWHHQYSAKHNQYNDYYDQHQQLEGEHYDAAFDDEKHRYEDYHHDHY
YEQEQHAHQPPRPDELKSHVVEDHATEDHVTTRHDHEHHEEVHPPHHYEE
HGYYDTEGNFHHYDDHDDEEAHYDHEYYDHHHYDHDEHHHAYHADDHHME
EQHAAEHHAVEHHAAEHHAPEHPAPEHHAAEHHAQAHHTQEHHPQEHHAA
EHHAGEHHAAEHHAAKTSGPEHHAGERHAGEHHADEHYNPEQHASQHQDG
DRTHAQGHSENSKRDEHHAQDGHGHHHDSHEYTHNHYEKGSHTGSEHEGQ
RQQVHFAPDDF*
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spliced messenger RNA

>Ggra10236.t1 ID=Ggra10236.t1|Name=Ggra10236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000016_pilon:177586..178821- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCCAACCTTCGCAGTCGTGCCGTCAAGTTTTCGCAGGACAAACA
ATATGAATTGCCTTCTCTTCATGTACAAAACCGACCGCTTAAACTTTCAG
TCGATTCGTATAACGCCCTTGTTGTTTCTGTTGCCGCCTTCATTCTTCTC
TTGTTCGGCTTTTATTCCCTGTCTTTGTTCTCTGCAAACCATGAGATTGT
AGGCCTACAACCGCCTCTCTCGCTGCACAGGGAAATAGGAGATCACTTTC
ACAAGCAGTCGAACCGTGCTGGTTGGGATGATCACCACTACGATGCTCCT
CTCGAAAACGATTGGCATCATCAGTACTCTGCAAAACACAATCAATACAA
TGACTATTACGATCAGCATCAGCAGCTTGAAGGTGAGCACTACGACGCCG
CTTTTGATGATGAAAAGCACCGCTATGAGGACTACCATCATGACCACTAC
TACGAACAAGAACAACACGCTCATCAACCACCCCGCCCTGATGAGCTGAA
GAGCCATGTTGTTGAAGATCATGCCACGGAAGACCATGTTACCACACGAC
ATGATCATGAGCACCATGAAGAGGTTCATCCTCCCCATCACTATGAAGAG
CATGGTTACTACGATACTGAGGGCAACTTTCATCATTACGATGACCATGA
TGATGAAGAGGCTCACTATGACCATGAGTACTATGACCACCATCACTACG
ACCATGACGAACATCACCATGCGTACCATGCAGACGACCACCATATGGAG
GAACAACATGCAGCAGAACACCACGCAGTAGAACACCACGCAGCAGAGCA
CCACGCACCAGAACACCCCGCACCAGAACACCACGCAGCAGAGCACCACG
CACAAGCACACCATACACAGGAACACCATCCGCAAGAACACCACGCAGCA
GAGCATCATGCGGGCGAGCACCATGCCGCTGAACACCATGCAGCCAAAAC
CTCAGGGCCAGAACACCATGCTGGCGAGCGCCACGCGGGGGAGCACCATG
CTGACGAACATTACAATCCTGAACAACATGCATCGCAACATCAAGACGGT
GACCGCACCCACGCTCAAGGGCATTCCGAGAACAGCAAACGGGACGAACA
TCATGCCCAAGACGGTCACGGCCATCATCATGATTCACACGAGTATACAC
ACAATCATTACGAGAAAGGTTCTCATACCGGTTCTGAACATGAGGGACAG
AGGCAACAAGTTCATTTCGCTCCAGATGACTTCTAG
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protein sequence of Ggra10236.t1

>Ggra10236.t1 ID=Ggra10236.t1|Name=Ggra10236.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=412bp
MASNLRSRAVKFSQDKQYELPSLHVQNRPLKLSVDSYNALVVSVAAFILL
LFGFYSLSLFSANHEIVGLQPPLSLHREIGDHFHKQSNRAGWDDHHYDAP
LENDWHHQYSAKHNQYNDYYDQHQQLEGEHYDAAFDDEKHRYEDYHHDHY
YEQEQHAHQPPRPDELKSHVVEDHATEDHVTTRHDHEHHEEVHPPHHYEE
HGYYDTEGNFHHYDDHDDEEAHYDHEYYDHHHYDHDEHHHAYHADDHHME
EQHAAEHHAVEHHAAEHHAPEHPAPEHHAAEHHAQAHHTQEHHPQEHHAA
EHHAGEHHAAEHHAAKTSGPEHHAGERHAGEHHADEHYNPEQHASQHQDG
DRTHAQGHSENSKRDEHHAQDGHGHHHDSHEYTHNHYEKGSHTGSEHEGQ
RQQVHFAPDDF*
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mRNA from alignment at tig00000016_pilon:177586..178821-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10236.t1 ID=Ggra10236.t1|Name=Ggra10236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000016_pilon:177586..178821- (Gracilaria gracilis GNS1m male)
ATGGCGTCCAACCTTCGCAGTCGTGCCGTCAAGTTTTCGCAGGACAAACA
ATATGAATTGCCTTCTCTTCATGTACAAAACCGACCGCTTAAACTTTCAG
TCGATTCGTATAACGCCCTTGTTGTTTCTGTTGCCGCCTTCATTCTTCTC
TTGTTCGGCTTTTATTCCCTGTCTTTGTTCTCTGCAAACCATGAGATTGT
AGGCCTACAACCGCCTCTCTCGCTGCACAGGGAAATAGGAGATCACTTTC
ACAAGCAGTCGAACCGTGCTGGTTGGGATGATCACCACTACGATGCTCCT
CTCGAAAACGATTGGCATCATCAGTACTCTGCAAAACACAATCAATACAA
TGACTATTACGATCAGCATCAGCAGCTTGAAGGTGAGCACTACGACGCCG
CTTTTGATGATGAAAAGCACCGCTATGAGGACTACCATCATGACCACTAC
TACGAACAAGAACAACACGCTCATCAACCACCCCGCCCTGATGAGCTGAA
GAGCCATGTTGTTGAAGATCATGCCACGGAAGACCATGTTACCACACGAC
ATGATCATGAGCACCATGAAGAGGTTCATCCTCCCCATCACTATGAAGAG
CATGGTTACTACGATACTGAGGGCAACTTTCATCATTACGATGACCATGA
TGATGAAGAGGCTCACTATGACCATGAGTACTATGACCACCATCACTACG
ACCATGACGAACATCACCATGCGTACCATGCAGACGACCACCATATGGAG
GAACAACATGCAGCAGAACACCACGCAGTAGAACACCACGCAGCAGAGCA
CCACGCACCAGAACACCCCGCACCAGAACACCACGCAGCAGAGCACCACG
CACAAGCACACCATACACAGGAACACCATCCGCAAGAACACCACGCAGCA
GAGCATCATGCGGGCGAGCACCATGCCGCTGAACACCATGCAGCCAAAAC
CTCAGGGCCAGAACACCATGCTGGCGAGCGCCACGCGGGGGAGCACCATG
CTGACGAACATTACAATCCTGAACAACATGCATCGCAACATCAAGACGGT
GACCGCACCCACGCTCAAGGGCATTCCGAGAACAGCAAACGGGACGAACA
TCATGCCCAAGACGGTCACGGCCATCATCATGATTCACACGAGTATACAC
ACAATCATTACGAGAAAGGTTCTCATACCGGTTCTGAACATGAGGGACAG
AGGCAACAAGTTCATTTCGCTCCAGATGACTTCTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:177586..178821-

>Ggra10236.t1 ID=Ggra10236.t1|Name=Ggra10236.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000016_pilon:177586..178821- (Gracilaria gracilis GNS1m male)
ATGGCGTCCAACCTTCGCAGTCGTGCCGTCAAGTTTTCGCAGGACAAACA
ATATGAATTGCCTTCTCTTCATGTACAAAACCGACCGCTTAAACTTTCAG
TCGATTCGTATAACGCCCTTGTTGTTTCTGTTGCCGCCTTCATTCTTCTC
TTGTTCGGCTTTTATTCCCTGTCTTTGTTCTCTGCAAACCATGAGATTGT
AGGCCTACAACCGCCTCTCTCGCTGCACAGGGAAATAGGAGATCACTTTC
ACAAGCAGTCGAACCGTGCTGGTTGGGATGATCACCACTACGATGCTCCT
CTCGAAAACGATTGGCATCATCAGTACTCTGCAAAACACAATCAATACAA
TGACTATTACGATCAGCATCAGCAGCTTGAAGGTGAGCACTACGACGCCG
CTTTTGATGATGAAAAGCACCGCTATGAGGACTACCATCATGACCACTAC
TACGAACAAGAACAACACGCTCATCAACCACCCCGCCCTGATGAGCTGAA
GAGCCATGTTGTTGAAGATCATGCCACGGAAGACCATGTTACCACACGAC
ATGATCATGAGCACCATGAAGAGGTTCATCCTCCCCATCACTATGAAGAG
CATGGTTACTACGATACTGAGGGCAACTTTCATCATTACGATGACCATGA
TGATGAAGAGGCTCACTATGACCATGAGTACTATGACCACCATCACTACG
ACCATGACGAACATCACCATGCGTACCATGCAGACGACCACCATATGGAG
GAACAACATGCAGCAGAACACCACGCAGTAGAACACCACGCAGCAGAGCA
CCACGCACCAGAACACCCCGCACCAGAACACCACGCAGCAGAGCACCACG
CACAAGCACACCATACACAGGAACACCATCCGCAAGAACACCACGCAGCA
GAGCATCATGCGGGCGAGCACCATGCCGCTGAACACCATGCAGCCAAAAC
CTCAGGGCCAGAACACCATGCTGGCGAGCGCCACGCGGGGGAGCACCATG
CTGACGAACATTACAATCCTGAACAACATGCATCGCAACATCAAGACGGT
GACCGCACCCACGCTCAAGGGCATTCCGAGAACAGCAAACGGGACGAACA
TCATGCCCAAGACGGTCACGGCCATCATCATGATTCACACGAGTATACAC
ACAATCATTACGAGAAAGGTTCTCATACCGGTTCTGAACATGAGGGACAG
AGGCAACAAGTTCATTTCGCTCCAGATGACTTCTAG
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