Ggra10268.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra10268.t1
Unique Name	Ggra10268.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	148

Homology

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: A0A2V3IF03 (60S ribosomal protein L23a n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF03_9FLOR)

HSP 1 Score: 229 bits (584), Expect = 3.760e-75
Identity = 120/147 (81.63%), Postives = 132/147 (89.80%), Query Frame = 0

Query:    1 MKPAAKDGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            MKP   D PT+        K G+QIVKGKK+R+SVTFRRP+TLKLPRDPKYPRKALA+KPKLDDHQVIKYPLTTESA+KMIED NTIVFIVDVRANKPKIKAAV KMY+IQA+KVNTLVRPDG+KKAYVRLTKEH+ALDVASKIG+I
Sbjct:    1 MKPTGTDRPTKXXXXXXXXKVGVQIVKGKKIRTSVTFRRPDTLKLPRDPKYPRKALAKKPKLDDHQVIKYPLTTESAMKMIEDHNTIVFIVDVRANKPKIKAAVAKMYEIQAVKVNTLVRPDGQKKAYVRLTKEHEALDVASKIGII 147

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: R7QNJ5 (Ribosomal_L23eN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNJ5_CHOCR)

HSP 1 Score: 221 bits (564), Expect = 3.680e-72
Identity = 117/138 (84.78%), Postives = 129/138 (93.48%), Query Frame = 0

Query:   10 TRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            ++++KAA AAK GI+IVKGKK R+SV FRRPETLKL RDPKYPRKALA+KPKLDDHQVIKYPLTTESA+KMIED NTIVFIVDVRANKPKIKAA+ KMYDIQA KVNTLVRPDG+KKAYVRLT +HDALDVASKIG+I
Sbjct:    6 SKSDKAALAAKTGIKIVKGKKTRTSVHFRRPETLKLDRDPKYPRKALAKKPKLDDHQVIKYPLTTESAMKMIEDDNTIVFIVDVRANKPKIKAAIAKMYDIQAAKVNTLVRPDGQKKAYVRLTNDHDALDVASKIGII 143

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: A0A2T7CX21 (Ribosomal_L23eN domain-containing protein n=3 Tax=Panicum hallii TaxID=206008 RepID=A0A2T7CX21_9POAL)

HSP 1 Score: 181 bits (458), Expect = 2.480e-55
Identity = 98/145 (67.59%), Postives = 119/145 (82.07%), Query Frame = 0

Query:    3 PAAKDGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            PA KD  T+A K AKA K+G    K KK+R+SVTF RP+TLK  RDPKYPR +   + KLD +Q++KYPLTTESA+K IED NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   49 PAKKDAKTQALKVAKAVKSGAVKKKTKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 193

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: K3YWE7 (Ribosomal_L23eN domain-containing protein n=9 Tax=Paniceae TaxID=147428 RepID=K3YWE7_SETIT)

HSP 1 Score: 177 bits (448), Expect = 2.180e-54
Identity = 95/141 (67.38%), Postives = 115/141 (81.56%), Query Frame = 0

Query:    7 DGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            D   +A K AKA K+G    K KK+R+SVTF RP TLK PRDPKYPR +   + KLD +Q++KYPLTTESA+K IED NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   11 DTKAQALKVAKAVKSGTTKRKAKKIRTSVTFHRPRTLKKPRDPKYPRISAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 151

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: A0A0D6R0M1 (Ribosomal_L23eN domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R0M1_ARACU)

HSP 1 Score: 176 bits (445), Expect = 6.860e-54
Identity = 97/143 (67.83%), Postives = 117/143 (81.82%), Query Frame = 0

Query:    7 DGPTRAEKAAKAAKAGIQIVKGK--KVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            D   +A+KAAKA KAG   +K K  K+R+SVTF RP+TLK PR+PKYPR +  R+ KLD ++V+KYPLTTESA+K IED NT+VFIVDVRA+K KIK AV KMYDIQ  KVNTL+RPDG KKAYVRLT ++DALDVA+KIG+I
Sbjct:   12 DPKAQAQKAAKAVKAGAVTLKKKTKKIRTSVTFHRPKTLKTPRNPKYPRLSAPRRNKLDQYEVLKYPLTTESAMKKIEDNNTLVFIVDVRADKKKIKDAVRKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: A0A5J9TVH9 (Ribosomal_L23eN domain-containing protein n=15 Tax=Poaceae TaxID=4479 RepID=A0A5J9TVH9_9POAL)

HSP 1 Score: 174 bits (442), Expect = 1.070e-53
Identity = 93/134 (69.40%), Postives = 113/134 (84.33%), Query Frame = 0

Query:   14 KAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            K AKA K+G    K KK+R+SVTF RP+TLK PRDPKYPR +   + KLD +Q++KYPLTTESA+K IED NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:    2 KVAKAVKSGQVKKKTKKIRTSVTFHRPKTLKKPRDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 135

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: K3YAJ8 (Ribosomal_L23eN domain-containing protein n=16 Tax=Poaceae TaxID=4479 RepID=K3YAJ8_SETIT)

HSP 1 Score: 174 bits (442), Expect = 1.840e-53
Identity = 94/141 (66.67%), Postives = 115/141 (81.56%), Query Frame = 0

Query:    7 DGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            D   +A K AKA K+G    K KK+R+SVTF RP+TLK  RDPKYPR +   + KLD +Q++KYPLTTESA+K IED NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   12 DAKAQALKVAKAVKSGTVKKKTKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 152

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: A0A811QVY4 (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811QVY4_9POAL)

HSP 1 Score: 176 bits (447), Expect = 1.900e-53
Identity = 95/141 (67.38%), Postives = 116/141 (82.27%), Query Frame = 0

Query:    7 DGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            D  T+A K AKA K+G    K KK+R+SVTF RP+TLK  RDPKYPR +   + KLD +Q++KYPLTTESA+K IED NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   69 DAKTQALKVAKAVKSGSAKKKTKKIRTSVTFHRPKTLKKARDPKYPRISTTGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 209

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: B6TN30 (60S ribosomal protein L23a n=7 Tax=Panicoideae TaxID=147369 RepID=B6TN30_MAIZE)

HSP 1 Score: 175 bits (444), Expect = 2.350e-53
Identity = 95/141 (67.38%), Postives = 117/141 (82.98%), Query Frame = 0

Query:    7 DGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            D  T+A K AKA K+G  + K KK+R+SVTF RP+TLK  RDPKYPR +   + KLD +Q++KYPLTTESA+K IED NT+VFIVD++A+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYV+LT ++DALDVA+KIG+I
Sbjct:   43 DAKTQALKVAKAVKSG-SVKKTKKIRTSVTFHRPKTLKKARDPKYPRISTTGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 182

[Close]

BLAST of Ggra10268.t1 vs. uniprot
Match: W1NKZ6 (Ribosomal_L23eN domain-containing protein n=7 Tax=Magnoliopsida TaxID=3398 RepID=W1NKZ6_AMBTC)

HSP 1 Score: 174 bits (441), Expect = 2.780e-53
Identity = 96/143 (67.13%), Postives = 117/143 (81.82%), Query Frame = 0

Query:    7 DGPTRAEKAAKAAKAGIQIVKGK--KVRSSVTFRRPETLKLPRDPKYPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKIKAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI 147
            D   +A KAAKA K+G   +K K  K+R+SVTF RP+TLK  R+PKYPR +   + KLD +Q++K+PLTTESA+K IED NT+VFIVD+RA+K KIKAAV KMYDIQA KVNTL+RPDGKKKAYVRLT +HDALDVA+KIG+I
Sbjct:   12 DPKAQALKAAKAVKSGASTLKKKTKKIRTSVTFHRPKTLKKERNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVRLTPDHDALDVANKIGII 154

The following BLAST results are available for this feature:

BLAST of Ggra10268.t1 vs. uniprot

BLAST of Ggra10268.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IF03	3.760e-75	81.63	60S ribosomal protein L23a n=1 Tax=Gracilariopsis ...	[more]
R7QNJ5	3.680e-72	84.78	Ribosomal_L23eN domain-containing protein n=1 Tax=...	[more]
A0A2T7CX21	2.480e-55	67.59	Ribosomal_L23eN domain-containing protein n=3 Tax=...	[more]
K3YWE7	2.180e-54	67.38	Ribosomal_L23eN domain-containing protein n=9 Tax=...	[more]
A0A0D6R0M1	6.860e-54	67.83	Ribosomal_L23eN domain-containing protein n=2 Tax=...	[more]
A0A5J9TVH9	1.070e-53	69.40	Ribosomal_L23eN domain-containing protein n=15 Tax...	[more]
K3YAJ8	1.840e-53	66.67	Ribosomal_L23eN domain-containing protein n=16 Tax...	[more]
A0A811QVY4	1.900e-53	67.38	Hypothetical protein n=1 Tax=Miscanthus lutariorip...	[more]
B6TN30	2.350e-53	67.38	60S ribosomal protein L23a n=7 Tax=Panicoideae Tax...	[more]
W1NKZ6	2.780e-53	67.13	Ribosomal_L23eN domain-containing protein n=7 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 10..56 e-value: 9.7E-17 score: 60.9
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 66..130 e-value: 2.0E-14 score: 53.7
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 9..147
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 67..147 score: 22.035835
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 28..147 e-value: 8.4E-46 score: 157.0
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 125..140
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 66..140

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:298326..299004 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10268.t1	Ggra10268.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000016_pilon 298326..299004 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra10268.t1 ID=Ggra10268.t1|Name=Ggra10268.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MKPAAKDGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPK
YPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKI
KAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005633	Ribosomal_L23/L25_N
IPR013025	Ribosomal_L25/23
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR001014	Ribosomal_L23/L25_CS
IPR012678	Ribosomal_L23/L15e_core_dom_sf