Ggra10268.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10268.t1
Unique NameGgra10268.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:298326..299004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ga01353.1.p
PFAMsRibosomal_L23,Ribosomal_L23eN
Max annot lvl35493|Streptophyta
KEGG koko:K02893
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue2.68e-55
EggNOG OGsCOG0089@1|root,KOG1751@2759|Eukaryota,37TPV@33090|Viridiplantae,3GHW4@35493|Streptophyta
DescriptionBelongs to the universal ribosomal protein uL23 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10268Ggra10268Gracilaria gracilis GNS1m malegenetig00000016_pilon 298326..299004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10268.t1Ggra10268.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 298326..299004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10268.t1.stop1Ggra10268.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 298326..298328 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10268.t1.CDS1Ggra10268.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 298326..298750 -
Ggra10268.t1.CDS2Ggra10268.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 298986..299004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10268.t1.exon1Ggra10268.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 298326..298750 -
Ggra10268.t1.exon2Ggra10268.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 298986..299004 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10268.t1.intron1Ggra10268.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 298751..298985 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10268.t1.start1Ggra10268.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 299002..299004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10268.t1 ID=Ggra10268.t1|Name=Ggra10268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MKPAAKDGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPK
YPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKI
KAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI*
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spliced messenger RNA

>Ggra10268.t1 ID=Ggra10268.t1|Name=Ggra10268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000016_pilon:298326..299004- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCAGCAGCAAAAGATGGTCCCACAAGGGCGGAAAAGGCCGCGAA
AGCCGCCAAGGCTGGTATTCAGATTGTAAAGGGGAAGAAAGTGCGTTCCT
CTGTAACATTCAGACGCCCCGAAACGCTCAAGCTTCCGCGCGATCCGAAG
TACCCCCGAAAAGCGCTCGCCAGAAAGCCAAAACTTGACGATCATCAAGT
GATCAAGTACCCTCTTACAACAGAGAGTGCTATCAAAATGATCGAAGACT
TCAACACAATTGTTTTCATCGTTGACGTCAGAGCGAATAAGCCCAAGATC
AAGGCCGCCGTCTTGAAGATGTACGACATTCAAGCTCTCAAAGTTAACAC
TCTTGTTCGTCCAGACGGTAAGAAGAAGGCATATGTGAGACTGACTAAGG
AGCATGACGCCCTTGATGTGGCTTCGAAGATTGGTGTTATCTAA
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protein sequence of Ggra10268.t1

>Ggra10268.t1 ID=Ggra10268.t1|Name=Ggra10268.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MKPAAKDGPTRAEKAAKAAKAGIQIVKGKKVRSSVTFRRPETLKLPRDPK
YPRKALARKPKLDDHQVIKYPLTTESAIKMIEDFNTIVFIVDVRANKPKI
KAAVLKMYDIQALKVNTLVRPDGKKKAYVRLTKEHDALDVASKIGVI*
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mRNA from alignment at tig00000016_pilon:298326..299004-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10268.t1 ID=Ggra10268.t1|Name=Ggra10268.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=679bp|location=Sequence derived from alignment at tig00000016_pilon:298326..299004- (Gracilaria gracilis GNS1m male)
ATGAAGCCAGCAGCAAAAGGTATGTCTTGTGCTCTTTTCAGTTGTCGCCC
TAAATGCTTTATATTCCATTGGCGGCCTCGATCCCGAACATCAGACTTCT
GACGAACCGATCCATGCTGCTCGTTCCGCGATGCGGATGCCCGTCTATTT
CTGCGATAAATCGAACGCTGCGTTAATCTTTTTGAACTTGTCGATTTGAT
GCTGCGATTGACATATCTCAACCTGCTTGCGCGGTTTTGGAATCTTTATT
GTAGATGGTCCCACAAGGGCGGAAAAGGCCGCGAAAGCCGCCAAGGCTGG
TATTCAGATTGTAAAGGGGAAGAAAGTGCGTTCCTCTGTAACATTCAGAC
GCCCCGAAACGCTCAAGCTTCCGCGCGATCCGAAGTACCCCCGAAAAGCG
CTCGCCAGAAAGCCAAAACTTGACGATCATCAAGTGATCAAGTACCCTCT
TACAACAGAGAGTGCTATCAAAATGATCGAAGACTTCAACACAATTGTTT
TCATCGTTGACGTCAGAGCGAATAAGCCCAAGATCAAGGCCGCCGTCTTG
AAGATGTACGACATTCAAGCTCTCAAAGTTAACACTCTTGTTCGTCCAGA
CGGTAAGAAGAAGGCATATGTGAGACTGACTAAGGAGCATGACGCCCTTG
ATGTGGCTTCGAAGATTGGTGTTATCTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:298326..299004-

>Ggra10268.t1 ID=Ggra10268.t1|Name=Ggra10268.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000016_pilon:298326..299004- (Gracilaria gracilis GNS1m male)
ATGAAGCCAGCAGCAAAAGATGGTCCCACAAGGGCGGAAAAGGCCGCGAA
AGCCGCCAAGGCTGGTATTCAGATTGTAAAGGGGAAGAAAGTGCGTTCCT
CTGTAACATTCAGACGCCCCGAAACGCTCAAGCTTCCGCGCGATCCGAAG
TACCCCCGAAAAGCGCTCGCCAGAAAGCCAAAACTTGACGATCATCAAGT
GATCAAGTACCCTCTTACAACAGAGAGTGCTATCAAAATGATCGAAGACT
TCAACACAATTGTTTTCATCGTTGACGTCAGAGCGAATAAGCCCAAGATC
AAGGCCGCCGTCTTGAAGATGTACGACATTCAAGCTCTCAAAGTTAACAC
TCTTGTTCGTCCAGACGGTAAGAAGAAGGCATATGTGAGACTGACTAAGG
AGCATGACGCCCTTGATGTGGCTTCGAAGATTGGTGTTATCTAA
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