Ggra3602.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3602.t1
Unique NameGgra3602.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:238629..240264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708000.1
Preferred namePLSCR5
PFAMsScramblase
Max annot lvl2759|Eukaryota
KEGG koko:K04818
KEGG TC1.A.9.1
KEGG Pathwayko04080,map04080
GOsGO:0000981,GO:0000982,GO:0001077,GO:0001228,GO:0001300,GO:0001775,GO:0002237,GO:0002252,GO:0002376,GO:0002520,GO:0002526,GO:0002682,GO:0002684,GO:0002694,GO:0003674,GO:0003700,GO:0005102,GO:0005154,GO:0005215,GO:0005319,GO:0005488,GO:0005509,GO:0005515,GO:0005548,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0006979,GO:0007009,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007275,GO:0007568,GO:0007569,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009611,GO:0009615,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010876,GO:0010911,GO:0010912,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0017121,GO:0017124,GO:0017128,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019899,GO:0019904,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030168,GO:0031012,GO:0031224,GO:0031225,GO:0031226,GO:0031235,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032091,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032781,GO:0033003,GO:0033036,GO:0033043,GO:0033500,GO:0033554,GO:0033993,GO:0034097,GO:0034599,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0035455,GO:0035456,GO:0035556,GO:0042060,GO:0042221,GO:0042398,GO:0042592,GO:0042593,GO:0042609,GO:0042632,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043462,GO:0043900,GO:0043901,GO:0043903,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0045069,GO:0045071,GO:0045088,GO:0045089,GO:0045121,GO:0045893,GO:0045935,GO:0045944,GO:0046474,GO:0046483,GO:0046486,GO:0046658,GO:0046872,GO:0048306,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050817,GO:0050865,GO:0050878,GO:0050896,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055088,GO:0055092,GO:0060255,GO:0060368,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070782,GO:0070851,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090407,GO:0097035,GO:0097190,GO:0097193,GO:0097194,GO:0097659,GO:0098542,GO:0098552,GO:0098562,GO:0098589,GO:0098753,GO:0098805,GO:0098857,GO:0098916,GO:0099536,GO:0099537,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902680,GO:1903146,GO:1903147,GO:1903506,GO:1903508,GO:1903900,GO:1903901,GO:2000112,GO:2000371,GO:2000373,GO:2001020,GO:2001022,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue2.63e-76
EggNOG OGsKOG0621@1|root,KOG0621@2759|Eukaryota
Descriptionphospholipid scrambling
COG categoryO
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3602Ggra3602Gracilaria gracilis GNS1m malegenetig00000850_pilon 238629..240264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3602.t1Ggra3602.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 238629..240264 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3602.t1.start1Ggra3602.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 238629..238631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3602.t1.CDS1Ggra3602.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 238629..239045 +
Ggra3602.t1.CDS2Ggra3602.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 239130..239649 +
Ggra3602.t1.CDS3Ggra3602.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 239747..240264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3602.t1.exon1Ggra3602.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 238629..239045 +
Ggra3602.t1.exon2Ggra3602.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 239130..239649 +
Ggra3602.t1.exon3Ggra3602.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 239747..240264 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3602.t1.intron1Ggra3602.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 239046..239129 +
Ggra3602.t1.intron2Ggra3602.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 239650..239746 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3602.t1.stop1Ggra3602.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 240262..240264 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3602.t1 ID=Ggra3602.t1|Name=Ggra3602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp
MSGPLSHRCRCFYISWRRLTSSAYTSLRYSASPPHQLKEPAPFRNRSSLP
TASVSGKPKCRAPSVVRARARALCTSENHSVAKPEAIQAATGSELVLSPP
ALVVTREYEWGNILIGFEQANKYTIRAAPGGEVVGYIAEEGSFGSVVTRN
ILRTRRPFKGTVFDKDQNVVFQIRRPLYLISTSIFVETPEGDTIGEVHMN
WHMWRRRYNLYVDKTQFAEVDSGFLAVDFDMRDVDGTKLASVNKDFTGFA
REIFTDARQYVLRMDPSYGLEHDGSLVYDAATVSTSTEEHGAQKLAERER
AVILGAAIAIDFDYFSLHSRGPGPGMMMMPPVGAPAPVPPGAGAGAAGAA
GAAGAAGADAGAAAGADVLSDTMGGGASVGSETPYEINDSEINADTTQSS
SQPGGWDDAESQRENQFGDSNQTEDTGESQWATFEEPDHGFDDPYADDDA
WSGDNDTWAQASGDDEGGASSGLFDIIKGIFFDE*
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spliced messenger RNA

>Ggra3602.t1 ID=Ggra3602.t1|Name=Ggra3602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1455bp|location=Sequence derived from alignment at tig00000850_pilon:238629..240264+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGACCCCTATCACATCGCTGCCGATGCTTCTATATATCGTGGCG
CCGTCTCACATCCTCTGCTTATACGTCGCTTCGGTATTCAGCAAGCCCGC
CACATCAACTGAAGGAACCAGCCCCGTTTCGCAATCGGTCTTCGCTTCCG
ACTGCCTCAGTATCCGGAAAACCGAAATGCAGAGCCCCATCCGTTGTACG
AGCGCGAGCGCGAGCGCTATGTACATCAGAAAATCATTCAGTTGCCAAAC
CTGAGGCCATTCAAGCAGCCACTGGCAGTGAGCTTGTGTTGTCCCCTCCA
GCTCTTGTCGTCACACGCGAATACGAGTGGGGCAATATCCTTATTGGTTT
CGAGCAGGCCAATAAGTATACAATCCGCGCTGCACCTGGCGGCGAGGTAG
TTGGGTATATTGCAGAAGAGGGTTCGTTTGGAAGTGTCGTCACAAGAAAT
ATACTGCGTACGCGACGTCCATTTAAGGGGACAGTCTTTGACAAGGATCA
AAACGTCGTCTTCCAAATTCGTCGTCCCTTGTATCTTATATCCACATCGA
TTTTTGTAGAAACCCCAGAAGGTGATACAATTGGTGAAGTGCACATGAAT
TGGCACATGTGGAGAAGAAGGTACAACCTTTATGTCGACAAAACTCAATT
TGCTGAGGTTGACTCTGGCTTTCTCGCGGTAGACTTTGACATGCGTGATG
TTGACGGTACCAAACTTGCGTCTGTCAACAAGGACTTCACTGGGTTTGCC
CGTGAGATCTTTACAGATGCCAGACAATATGTACTGCGCATGGACCCGTC
GTACGGTTTAGAACACGATGGGTCGCTTGTCTATGATGCCGCGACAGTAA
GCACGTCTACAGAGGAGCATGGTGCTCAAAAGCTGGCCGAACGCGAACGC
GCTGTGATTCTTGGTGCTGCAATTGCAATCGATTTCGATTACTTCAGTCT
CCATAGTCGCGGCCCAGGCCCTGGAATGATGATGATGCCACCTGTTGGAG
CACCAGCACCAGTCCCGCCGGGAGCAGGGgcaggtgctgcaggtgctgca
ggcgctgcaggcgctgctggtgctgATGCAGGTGCGGCAGCCGGTGCTGA
CGTATTATCCGATACAATGGGCGGAGGAGCGTCAGTGGGGAGCGAAACAC
CATACGAAATCAATGACTCCGAGATAAACGCCGATACAACGCAGAGCTCT
TCGCAACCAGGAGGATGGGATGACGCAGAGTCTCAGAGAGAGAACCAATT
TGGCGATTCGAACCAAACAGAAGATACCGGCGAGTCACAGTGGGCGACAT
TTGAAGAACCAGATCACGGTTTCGATGATCCATATGCCGACGATGACGCA
TGGAGTGGAGATAACGATACATGGGCCCAGGCTAGTGGGGACGATGAAGG
CGGAGCCTCTAGTGGCTTATTTGACATAATCAAGGGAATCTTTTTTGACG
AGTAG
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protein sequence of Ggra3602.t1

>Ggra3602.t1 ID=Ggra3602.t1|Name=Ggra3602.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=485bp
MSGPLSHRCRCFYISWRRLTSSAYTSLRYSASPPHQLKEPAPFRNRSSLP
TASVSGKPKCRAPSVVRARARALCTSENHSVAKPEAIQAATGSELVLSPP
ALVVTREYEWGNILIGFEQANKYTIRAAPGGEVVGYIAEEGSFGSVVTRN
ILRTRRPFKGTVFDKDQNVVFQIRRPLYLISTSIFVETPEGDTIGEVHMN
WHMWRRRYNLYVDKTQFAEVDSGFLAVDFDMRDVDGTKLASVNKDFTGFA
REIFTDARQYVLRMDPSYGLEHDGSLVYDAATVSTSTEEHGAQKLAERER
AVILGAAIAIDFDYFSLHSRGPGPGMMMMPPVGAPAPVPPGAGAGAAGAA
GAAGAAGADAGAAAGADVLSDTMGGGASVGSETPYEINDSEINADTTQSS
SQPGGWDDAESQRENQFGDSNQTEDTGESQWATFEEPDHGFDDPYADDDA
WSGDNDTWAQASGDDEGGASSGLFDIIKGIFFDE*
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mRNA from alignment at tig00000850_pilon:238629..240264+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3602.t1 ID=Ggra3602.t1|Name=Ggra3602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1636bp|location=Sequence derived from alignment at tig00000850_pilon:238629..240264+ (Gracilaria gracilis GNS1m male)
ATGTCTGGACCCCTATCACATCGCTGCCGATGCTTCTATATATCGTGGCG
CCGTCTCACATCCTCTGCTTATACGTCGCTTCGGTATTCAGCAAGCCCGC
CACATCAACTGAAGGAACCAGCCCCGTTTCGCAATCGGTCTTCGCTTCCG
ACTGCCTCAGTATCCGGAAAACCGAAATGCAGAGCCCCATCCGTTGTACG
AGCGCGAGCGCGAGCGCTATGTACATCAGAAAATCATTCAGTTGCCAAAC
CTGAGGCCATTCAAGCAGCCACTGGCAGTGAGCTTGTGTTGTCCCCTCCA
GCTCTTGTCGTCACACGCGAATACGAGTGGGGCAATATCCTTATTGGTTT
CGAGCAGGCCAATAAGTATACAATCCGCGCTGCACCTGGCGGCGAGGTAG
TTGGGTATATTGCAGAAGTACGTACTGCCGTTTGAGTATCATCAAGTGAG
CGAGCGTTCACATCTTTCCTGCTAACGTTGTAACTGAATCATGTCAAACA
GGAGGGTTCGTTTGGAAGTGTCGTCACAAGAAATATACTGCGTACGCGAC
GTCCATTTAAGGGGACAGTCTTTGACAAGGATCAAAACGTCGTCTTCCAA
ATTCGTCGTCCCTTGTATCTTATATCCACATCGATTTTTGTAGAAACCCC
AGAAGGTGATACAATTGGTGAAGTGCACATGAATTGGCACATGTGGAGAA
GAAGGTACAACCTTTATGTCGACAAAACTCAATTTGCTGAGGTTGACTCT
GGCTTTCTCGCGGTAGACTTTGACATGCGTGATGTTGACGGTACCAAACT
TGCGTCTGTCAACAAGGACTTCACTGGGTTTGCCCGTGAGATCTTTACAG
ATGCCAGACAATATGTACTGCGCATGGACCCGTCGTACGGTTTAGAACAC
GATGGGTCGCTTGTCTATGATGCCGCGACAGTAAGCACGTCTACAGAGGA
GCATGGTGCTCAAAAGCTGGCCGAACGCGAACGCGCTGTGATTCTTGGTG
CTGCAATTGCAATCGATTTCGGTAGGTTGAACAACGTTTGCAAAGCTGCG
ATATGTCTACGAGCTTACGATGAGCTAACAAATATTCATTCTTCTCGTGA
TAATCTTGGATTCCGCAGATTACTTCAGTCTCCATAGTCGCGGCCCAGGC
CCTGGAATGATGATGATGCCACCTGTTGGAGCACCAGCACCAGTCCCGCC
GGGAGCAGGGgcaggtgctgcaggtgctgcaggcgctgcaggcgctgctg
gtgctgATGCAGGTGCGGCAGCCGGTGCTGACGTATTATCCGATACAATG
GGCGGAGGAGCGTCAGTGGGGAGCGAAACACCATACGAAATCAATGACTC
CGAGATAAACGCCGATACAACGCAGAGCTCTTCGCAACCAGGAGGATGGG
ATGACGCAGAGTCTCAGAGAGAGAACCAATTTGGCGATTCGAACCAAACA
GAAGATACCGGCGAGTCACAGTGGGCGACATTTGAAGAACCAGATCACGG
TTTCGATGATCCATATGCCGACGATGACGCATGGAGTGGAGATAACGATA
CATGGGCCCAGGCTAGTGGGGACGATGAAGGCGGAGCCTCTAGTGGCTTA
TTTGACATAATCAAGGGAATCTTTTTTGACGAGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:238629..240264+

>Ggra3602.t1 ID=Ggra3602.t1|Name=Ggra3602.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1455bp|location=Sequence derived from alignment at tig00000850_pilon:238629..240264+ (Gracilaria gracilis GNS1m male)
ATGTCTGGACCCCTATCACATCGCTGCCGATGCTTCTATATATCGTGGCG
CCGTCTCACATCCTCTGCTTATACGTCGCTTCGGTATTCAGCAAGCCCGC
CACATCAACTGAAGGAACCAGCCCCGTTTCGCAATCGGTCTTCGCTTCCG
ACTGCCTCAGTATCCGGAAAACCGAAATGCAGAGCCCCATCCGTTGTACG
AGCGCGAGCGCGAGCGCTATGTACATCAGAAAATCATTCAGTTGCCAAAC
CTGAGGCCATTCAAGCAGCCACTGGCAGTGAGCTTGTGTTGTCCCCTCCA
GCTCTTGTCGTCACACGCGAATACGAGTGGGGCAATATCCTTATTGGTTT
CGAGCAGGCCAATAAGTATACAATCCGCGCTGCACCTGGCGGCGAGGTAG
TTGGGTATATTGCAGAAGAGGGTTCGTTTGGAAGTGTCGTCACAAGAAAT
ATACTGCGTACGCGACGTCCATTTAAGGGGACAGTCTTTGACAAGGATCA
AAACGTCGTCTTCCAAATTCGTCGTCCCTTGTATCTTATATCCACATCGA
TTTTTGTAGAAACCCCAGAAGGTGATACAATTGGTGAAGTGCACATGAAT
TGGCACATGTGGAGAAGAAGGTACAACCTTTATGTCGACAAAACTCAATT
TGCTGAGGTTGACTCTGGCTTTCTCGCGGTAGACTTTGACATGCGTGATG
TTGACGGTACCAAACTTGCGTCTGTCAACAAGGACTTCACTGGGTTTGCC
CGTGAGATCTTTACAGATGCCAGACAATATGTACTGCGCATGGACCCGTC
GTACGGTTTAGAACACGATGGGTCGCTTGTCTATGATGCCGCGACAGTAA
GCACGTCTACAGAGGAGCATGGTGCTCAAAAGCTGGCCGAACGCGAACGC
GCTGTGATTCTTGGTGCTGCAATTGCAATCGATTTCGATTACTTCAGTCT
CCATAGTCGCGGCCCAGGCCCTGGAATGATGATGATGCCACCTGTTGGAG
CACCAGCACCAGTCCCGCCGGGAGCAGGGgcaggtgctgcaggtgctgca
ggcgctgcaggcgctgctggtgctgATGCAGGTGCGGCAGCCGGTGCTGA
CGTATTATCCGATACAATGGGCGGAGGAGCGTCAGTGGGGAGCGAAACAC
CATACGAAATCAATGACTCCGAGATAAACGCCGATACAACGCAGAGCTCT
TCGCAACCAGGAGGATGGGATGACGCAGAGTCTCAGAGAGAGAACCAATT
TGGCGATTCGAACCAAACAGAAGATACCGGCGAGTCACAGTGGGCGACAT
TTGAAGAACCAGATCACGGTTTCGATGATCCATATGCCGACGATGACGCA
TGGAGTGGAGATAACGATACATGGGCCCAGGCTAGTGGGGACGATGAAGG
CGGAGCCTCTAGTGGCTTATTTGACATAATCAAGGGAATCTTTTTTGACG
AGTAG
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