Ggra3792.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3792.t1
Unique NameGgra3792.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length553
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1786512..1788170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog509190.Cseg_2431
PFAMsABM
Max annot lvl28211|Alphaproteobacteria
Evalue6.21e-05
EggNOG OGsCOG1359@1|root,COG1359@2|Bacteria,1N4AB@1224|Proteobacteria,2UE2Y@28211|Alphaproteobacteria
DescriptionAntibiotic biosynthesis monooxygenase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3792Ggra3792Gracilaria gracilis GNS1m malegenetig00000850_pilon 1786512..1788170 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3792.t1.stop1Ggra3792.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1786512..1786514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3792.t1.CDS1Ggra3792.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1786512..1788170 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3792.t1.exon1Ggra3792.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1786512..1788170 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3792.t1.start1Ggra3792.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1788168..1788170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3792.t1Ggra3792.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1786512..1788170 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3792.t1 ID=Ggra3792.t1|Name=Ggra3792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MTSISLLLFLACATLGHCQPSGGSTNENQCATVTPTSIQGFSVFHSRPED
HNALVQELQNTVKPSQSEPGNLQYYMFTDPNQPELIGYFESYVDEEALYS
HLSQDYITDIFTGRYYNELRSKPADLYGPWLLHNVDVDDEIMEMVFYWEM
NCTRQHIWDIITNFTDASWIPGAPTTTIVALDENGQVIEGQEVNPDEVDP
LGPYAQRRTWENTGNVMDVRKVYQNESVYTFTQMNINDVVFSFADVVFYD
YNVTFTLDTEGVDPDSQSRGRYHVQTRIRKGDMQEGRAVEKQLFYSVAVN
HYQTIWNCTQGVFMKNARETVQKVHRALEALADERSGMLQGLYEEGFDME
GFVDDTIGADNGMEAAVIVKEVTSLQATPDLQVVAVEDIMIQTVLGIDVS
SRIIIYQLNEWARIVSIRVYEEGAVRSPRERRLSRATNKYYNTLEKGNAK
AVERLFARKNEVHNPAGYGVTEAEKAYEDFYAKYDSFDYTRSKDRTFVDV
ENMQTAQLITAEYVLANKTTVVEYPVEILTFNRRNLITKLESFHNPIATP
TS*
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spliced messenger RNA

>Ggra3792.t1 ID=Ggra3792.t1|Name=Ggra3792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000850_pilon:1786512..1788170- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCCATCTCCTTGCTTCTCTTCCTTGCATGTGCTACATTGGGACA
CTGCCAGCCATCCGGTGGATCAACCAATGAAAATCAGTGTGCCACAGTCA
CCCCCACCTCCATTCAGGGATTCAGTGTTTTCCACAGTCGCCCGGAAGAT
CATAATGCGTTAGTCCAGGAACTTCAAAACACGGTCAAGCCATCGCAAAG
CGAACCGGGGAATCTTCAGTACTACATGTTCACTGATCCTAATCAACCTG
AGCTAATAGGCTACTTCGAATCTTATGTCGATGAAGAGGCTTTGTATTCC
CATCTGTCGCAAGACTACATTACGGACATATTCACTGGCCGATATTACAA
TGAGTTAAGGTCCAAGCCTGCTGACCTATACGGACCTTGGCTCCTTCACA
ACGTTGATGTGGACGATGAGATCATGGAAATGGTGTTCTACTGGGAGATG
AACTGCACCAGGCAGCATATCTGGGATATCATCACAAATTTCACGGACGC
CTCGTGGATTCCAGGGGCCCCGACCACGACAATTGTGGCCCTCGATGAGA
ATGGACAGGTTATTGAAGGCCAGGAGGTTAATCCTGATGAAGTCGATCCA
CTGGGACCATATGCTCAGCGCCGTACTTGGGAAAATACAGGAAACGTTAT
GGACGTACGAAAAGTGTATCAGAATGAATCAGTTTACACATTCACGCAAA
TGAACATTAATGATGTCGTATTTTCGTTCGCAGACGTCGTGTTCTATGAT
TACAATGTGACTTTCACTCTTGATACAGAAGGCGTAGATCCTGACTCACA
AAGTCGTGGAAGGTATCATGTCCAAACCAGAATTAGGAAAGGGGACATGC
AAGAAGGTCGAGCAGTTGAGAAACAACTGTTTTACAGCGTTGCTGTGAAC
CATTACCAAACAATCTGGAACTGTACGCAGGGTGTCTTCATGAAGAACGC
ACGGGAAACTGTACAGAAAGTGCACAGGGCCCTGGAGGCCCTTGCCGACG
AGCGATCTGGTATGCTTCAAGGCCTATACGAGGAAGGCTTTGACATGGAG
GGCTTCGTTGATGATACGATCGGAGCTGATAATGGTATGGAGGCCGCAGT
TATCGTTAAAGAGGTGACATCCTTGCAAGCGACGCCCGACCTTCAGGTAG
TGGCAGTGGAAGATATCATGATACAAACAGTGTTGGGTATAGATGTATCC
AGCCGAATAATCATTTATCAGCTTAACGAATGGGCACGTATCGTGTCCAT
TCGAGTTTATGAAGAAGGCGCTGTTCGCAGTCCACGTGAAAGGAGGTTGT
CACGTGCGACGAACAAATACTACAATACTTTGGAGAAGGGCAACGCCAAA
GCCGTGGAAAGGCTCTTTGCCAGAAAGAATGAGGTACACAACCCAGCCGG
ATACGGTGTTACTGAGGCTGAGAAGGCTTACGAGGATTTCTACGCCAAAT
ACGATTCTTTCGATTACACACGATCCAAAGACCGTACCTTCGTGGATGTT
GAGAACATGCAGACCGCTCAGTTGATCACAGCCGAATACGTACTTGCGAA
CAAGACTACCGTCGTAGAATACCCGGTCGAAATTTTGACGTTTAACCGCA
GAAATCTTATTACCAAGTTGGAGTCGTTTCACAACCCGATTGCCACCCCG
ACGTCGTAG
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protein sequence of Ggra3792.t1

>Ggra3792.t1 ID=Ggra3792.t1|Name=Ggra3792.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MTSISLLLFLACATLGHCQPSGGSTNENQCATVTPTSIQGFSVFHSRPED
HNALVQELQNTVKPSQSEPGNLQYYMFTDPNQPELIGYFESYVDEEALYS
HLSQDYITDIFTGRYYNELRSKPADLYGPWLLHNVDVDDEIMEMVFYWEM
NCTRQHIWDIITNFTDASWIPGAPTTTIVALDENGQVIEGQEVNPDEVDP
LGPYAQRRTWENTGNVMDVRKVYQNESVYTFTQMNINDVVFSFADVVFYD
YNVTFTLDTEGVDPDSQSRGRYHVQTRIRKGDMQEGRAVEKQLFYSVAVN
HYQTIWNCTQGVFMKNARETVQKVHRALEALADERSGMLQGLYEEGFDME
GFVDDTIGADNGMEAAVIVKEVTSLQATPDLQVVAVEDIMIQTVLGIDVS
SRIIIYQLNEWARIVSIRVYEEGAVRSPRERRLSRATNKYYNTLEKGNAK
AVERLFARKNEVHNPAGYGVTEAEKAYEDFYAKYDSFDYTRSKDRTFVDV
ENMQTAQLITAEYVLANKTTVVEYPVEILTFNRRNLITKLESFHNPIATP
TS*
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mRNA from alignment at tig00000850_pilon:1786512..1788170-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3792.t1 ID=Ggra3792.t1|Name=Ggra3792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000850_pilon:1786512..1788170- (Gracilaria gracilis GNS1m male)
ATGACATCCATCTCCTTGCTTCTCTTCCTTGCATGTGCTACATTGGGACA
CTGCCAGCCATCCGGTGGATCAACCAATGAAAATCAGTGTGCCACAGTCA
CCCCCACCTCCATTCAGGGATTCAGTGTTTTCCACAGTCGCCCGGAAGAT
CATAATGCGTTAGTCCAGGAACTTCAAAACACGGTCAAGCCATCGCAAAG
CGAACCGGGGAATCTTCAGTACTACATGTTCACTGATCCTAATCAACCTG
AGCTAATAGGCTACTTCGAATCTTATGTCGATGAAGAGGCTTTGTATTCC
CATCTGTCGCAAGACTACATTACGGACATATTCACTGGCCGATATTACAA
TGAGTTAAGGTCCAAGCCTGCTGACCTATACGGACCTTGGCTCCTTCACA
ACGTTGATGTGGACGATGAGATCATGGAAATGGTGTTCTACTGGGAGATG
AACTGCACCAGGCAGCATATCTGGGATATCATCACAAATTTCACGGACGC
CTCGTGGATTCCAGGGGCCCCGACCACGACAATTGTGGCCCTCGATGAGA
ATGGACAGGTTATTGAAGGCCAGGAGGTTAATCCTGATGAAGTCGATCCA
CTGGGACCATATGCTCAGCGCCGTACTTGGGAAAATACAGGAAACGTTAT
GGACGTACGAAAAGTGTATCAGAATGAATCAGTTTACACATTCACGCAAA
TGAACATTAATGATGTCGTATTTTCGTTCGCAGACGTCGTGTTCTATGAT
TACAATGTGACTTTCACTCTTGATACAGAAGGCGTAGATCCTGACTCACA
AAGTCGTGGAAGGTATCATGTCCAAACCAGAATTAGGAAAGGGGACATGC
AAGAAGGTCGAGCAGTTGAGAAACAACTGTTTTACAGCGTTGCTGTGAAC
CATTACCAAACAATCTGGAACTGTACGCAGGGTGTCTTCATGAAGAACGC
ACGGGAAACTGTACAGAAAGTGCACAGGGCCCTGGAGGCCCTTGCCGACG
AGCGATCTGGTATGCTTCAAGGCCTATACGAGGAAGGCTTTGACATGGAG
GGCTTCGTTGATGATACGATCGGAGCTGATAATGGTATGGAGGCCGCAGT
TATCGTTAAAGAGGTGACATCCTTGCAAGCGACGCCCGACCTTCAGGTAG
TGGCAGTGGAAGATATCATGATACAAACAGTGTTGGGTATAGATGTATCC
AGCCGAATAATCATTTATCAGCTTAACGAATGGGCACGTATCGTGTCCAT
TCGAGTTTATGAAGAAGGCGCTGTTCGCAGTCCACGTGAAAGGAGGTTGT
CACGTGCGACGAACAAATACTACAATACTTTGGAGAAGGGCAACGCCAAA
GCCGTGGAAAGGCTCTTTGCCAGAAAGAATGAGGTACACAACCCAGCCGG
ATACGGTGTTACTGAGGCTGAGAAGGCTTACGAGGATTTCTACGCCAAAT
ACGATTCTTTCGATTACACACGATCCAAAGACCGTACCTTCGTGGATGTT
GAGAACATGCAGACCGCTCAGTTGATCACAGCCGAATACGTACTTGCGAA
CAAGACTACCGTCGTAGAATACCCGGTCGAAATTTTGACGTTTAACCGCA
GAAATCTTATTACCAAGTTGGAGTCGTTTCACAACCCGATTGCCACCCCG
ACGTCGTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1786512..1788170-

>Ggra3792.t1 ID=Ggra3792.t1|Name=Ggra3792.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000850_pilon:1786512..1788170- (Gracilaria gracilis GNS1m male)
ATGACATCCATCTCCTTGCTTCTCTTCCTTGCATGTGCTACATTGGGACA
CTGCCAGCCATCCGGTGGATCAACCAATGAAAATCAGTGTGCCACAGTCA
CCCCCACCTCCATTCAGGGATTCAGTGTTTTCCACAGTCGCCCGGAAGAT
CATAATGCGTTAGTCCAGGAACTTCAAAACACGGTCAAGCCATCGCAAAG
CGAACCGGGGAATCTTCAGTACTACATGTTCACTGATCCTAATCAACCTG
AGCTAATAGGCTACTTCGAATCTTATGTCGATGAAGAGGCTTTGTATTCC
CATCTGTCGCAAGACTACATTACGGACATATTCACTGGCCGATATTACAA
TGAGTTAAGGTCCAAGCCTGCTGACCTATACGGACCTTGGCTCCTTCACA
ACGTTGATGTGGACGATGAGATCATGGAAATGGTGTTCTACTGGGAGATG
AACTGCACCAGGCAGCATATCTGGGATATCATCACAAATTTCACGGACGC
CTCGTGGATTCCAGGGGCCCCGACCACGACAATTGTGGCCCTCGATGAGA
ATGGACAGGTTATTGAAGGCCAGGAGGTTAATCCTGATGAAGTCGATCCA
CTGGGACCATATGCTCAGCGCCGTACTTGGGAAAATACAGGAAACGTTAT
GGACGTACGAAAAGTGTATCAGAATGAATCAGTTTACACATTCACGCAAA
TGAACATTAATGATGTCGTATTTTCGTTCGCAGACGTCGTGTTCTATGAT
TACAATGTGACTTTCACTCTTGATACAGAAGGCGTAGATCCTGACTCACA
AAGTCGTGGAAGGTATCATGTCCAAACCAGAATTAGGAAAGGGGACATGC
AAGAAGGTCGAGCAGTTGAGAAACAACTGTTTTACAGCGTTGCTGTGAAC
CATTACCAAACAATCTGGAACTGTACGCAGGGTGTCTTCATGAAGAACGC
ACGGGAAACTGTACAGAAAGTGCACAGGGCCCTGGAGGCCCTTGCCGACG
AGCGATCTGGTATGCTTCAAGGCCTATACGAGGAAGGCTTTGACATGGAG
GGCTTCGTTGATGATACGATCGGAGCTGATAATGGTATGGAGGCCGCAGT
TATCGTTAAAGAGGTGACATCCTTGCAAGCGACGCCCGACCTTCAGGTAG
TGGCAGTGGAAGATATCATGATACAAACAGTGTTGGGTATAGATGTATCC
AGCCGAATAATCATTTATCAGCTTAACGAATGGGCACGTATCGTGTCCAT
TCGAGTTTATGAAGAAGGCGCTGTTCGCAGTCCACGTGAAAGGAGGTTGT
CACGTGCGACGAACAAATACTACAATACTTTGGAGAAGGGCAACGCCAAA
GCCGTGGAAAGGCTCTTTGCCAGAAAGAATGAGGTACACAACCCAGCCGG
ATACGGTGTTACTGAGGCTGAGAAGGCTTACGAGGATTTCTACGCCAAAT
ACGATTCTTTCGATTACACACGATCCAAAGACCGTACCTTCGTGGATGTT
GAGAACATGCAGACCGCTCAGTTGATCACAGCCGAATACGTACTTGCGAA
CAAGACTACCGTCGTAGAATACCCGGTCGAAATTTTGACGTTTAACCGCA
GAAATCTTATTACCAAGTTGGAGTCGTTTCACAACCCGATTGCCACCCCG
ACGTCGTAG
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