Ggra3842.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3842.t1
Unique NameGgra3842.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2201168..2201995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog307480.IW16_07940
PFAMsCyclase
Max annot lvl976|Bacteroidetes
Evalue1.62e-37
EggNOG OGsCOG1878@1|root,COG1878@2|Bacteria,4NIR3@976|Bacteroidetes,1HY3N@117743|Flavobacteriia,3ZP02@59732|Chryseobacterium
DescriptionPutative cyclase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3842Ggra3842Gracilaria gracilis GNS1m malegenetig00000850_pilon 2201168..2201995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3842.t1Ggra3842.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2201168..2201995 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3842.t1.stop1Ggra3842.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2201168..2201170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3842.t1.CDS1Ggra3842.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2201168..2201829 -
Ggra3842.t1.CDS2Ggra3842.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2201911..2201995 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3842.t1.exon1Ggra3842.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2201168..2201829 -
Ggra3842.t1.exon2Ggra3842.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2201911..2201995 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3842.t1.intron1Ggra3842.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2201830..2201910 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3842.t1.start1Ggra3842.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2201993..2201995 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3842.t1 ID=Ggra3842.t1|Name=Ggra3842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp
MTTTDKLGNAALLTQRSMLSAITGTKFTLRCPDSTVFNDDSQNTSLGIGT
HVDGLGHCERDNTYYAGHSKTEVYHTEGIRVLGLAENVPFFIARFKMLDM
AAYYGVEIVDGGKQYSSADIEGAAKAAGIVFNAGDIVLLRSGYTQYLNDP
EIFNLSEPGPGLDAAMCLAQKDPLMIAADTVGLEVHAPGLWTDYPVHNYL
MREKGIYIGEVFNLEELARDKVTQGTIVISITQIAGLCQVRCNPLCFV*
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spliced messenger RNA

>Ggra3842.t1 ID=Ggra3842.t1|Name=Ggra3842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000850_pilon:2201168..2201995- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACTACTGACAAACTCGGCAACGCCGCGCTACTGACCCAGCGGAG
CATGCTGTCCGCCATCACTGGAACTAAGTTCACGCTTCGATGCCCGGATA
GCACCGTTTTCAACGATGATAGTCAGAACACGAGTTTAGGCATCGGAACT
CATGTAGATGGGCTTGGGCACTGCGAAAGAGATAATACTTACTACGCAGG
ACACTCCAAAACAGAAGTTTACCACACAGAGGGAATTCGTGTTCTGGGTT
TAGCAGAGAACGTCCCGTTCTTCATTGCGAGATTTAAGATGCTCGACATG
GCGGCATATTATGGCGTGGAAATTGTTGACGGTGGAAAACAGTATTCGAG
CGCCGATATTGAGGGCGCCGCGAAAGCTGCTGGCATTGTCTTCAATGCAG
GCGATATTGTACTGCTTCGCTCAGGTTATACTCAATATCTGAATGACCCC
GAAATATTCAACCTCTCTGAGCCAGGCCCAGGACTTGATGCTGCCATGTG
TCTTGCGCAAAAGGACCCTCTTATGATTGCTGCCGACACCGTTGGATTAG
AGGTACATGCTCCTGGTCTCTGGACTGATTATCCGGTTCACAACTATCTA
ATGCGTGAGAAAGGAATTTATATTGGCGAGGTGTTCAACTTAGAAGAGCT
TGCACGGGATAAGGTCACACAAGGAACCATAGTTATTTCCATTACTCAGA
TAGCTGGACTTTGCCAAGTGCGGTGCAATCCACTTTGCTTCGTCTAG
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protein sequence of Ggra3842.t1

>Ggra3842.t1 ID=Ggra3842.t1|Name=Ggra3842.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MTTTDKLGNAALLTQRSMLSAITGTKFTLRCPDSTVFNDDSQNTSLGIGT
HVDGLGHCERDNTYYAGHSKTEVYHTEGIRVLGLAENVPFFIARFKMLDM
AAYYGVEIVDGGKQYSSADIEGAAKAAGIVFNAGDIVLLRSGYTQYLNDP
EIFNLSEPGPGLDAAMCLAQKDPLMIAADTVGLEVHAPGLWTDYPVHNYL
MREKGIYIGEVFNLEELARDKVTQGTIVISITQIAGLCQVRCNPLCFV*
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mRNA from alignment at tig00000850_pilon:2201168..2201995-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3842.t1 ID=Ggra3842.t1|Name=Ggra3842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000850_pilon:2201168..2201995- (Gracilaria gracilis GNS1m male)
ATGACTACTACTGACAAACTCGGCAACGCCGCGCTACTGACCCAGCGGAG
CATGCTGTCCGCCATCACTGGAACTAAGTTCACGCGTATATACCACCTCG
GCGTTTTGGTTGACAAAAATACTCCCGCATGAGGTGATCGTACCCATGCT
GTGACAATCAAGCAAGTTCGATGCCCGGATAGCACCGTTTTCAACGATGA
TAGTCAGAACACGAGTTTAGGCATCGGAACTCATGTAGATGGGCTTGGGC
ACTGCGAAAGAGATAATACTTACTACGCAGGACACTCCAAAACAGAAGTT
TACCACACAGAGGGAATTCGTGTTCTGGGTTTAGCAGAGAACGTCCCGTT
CTTCATTGCGAGATTTAAGATGCTCGACATGGCGGCATATTATGGCGTGG
AAATTGTTGACGGTGGAAAACAGTATTCGAGCGCCGATATTGAGGGCGCC
GCGAAAGCTGCTGGCATTGTCTTCAATGCAGGCGATATTGTACTGCTTCG
CTCAGGTTATACTCAATATCTGAATGACCCCGAAATATTCAACCTCTCTG
AGCCAGGCCCAGGACTTGATGCTGCCATGTGTCTTGCGCAAAAGGACCCT
CTTATGATTGCTGCCGACACCGTTGGATTAGAGGTACATGCTCCTGGTCT
CTGGACTGATTATCCGGTTCACAACTATCTAATGCGTGAGAAAGGAATTT
ATATTGGCGAGGTGTTCAACTTAGAAGAGCTTGCACGGGATAAGGTCACA
CAAGGAACCATAGTTATTTCCATTACTCAGATAGCTGGACTTTGCCAAGT
GCGGTGCAATCCACTTTGCTTCGTCTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:2201168..2201995-

>Ggra3842.t1 ID=Ggra3842.t1|Name=Ggra3842.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000850_pilon:2201168..2201995- (Gracilaria gracilis GNS1m male)
ATGACTACTACTGACAAACTCGGCAACGCCGCGCTACTGACCCAGCGGAG
CATGCTGTCCGCCATCACTGGAACTAAGTTCACGCTTCGATGCCCGGATA
GCACCGTTTTCAACGATGATAGTCAGAACACGAGTTTAGGCATCGGAACT
CATGTAGATGGGCTTGGGCACTGCGAAAGAGATAATACTTACTACGCAGG
ACACTCCAAAACAGAAGTTTACCACACAGAGGGAATTCGTGTTCTGGGTT
TAGCAGAGAACGTCCCGTTCTTCATTGCGAGATTTAAGATGCTCGACATG
GCGGCATATTATGGCGTGGAAATTGTTGACGGTGGAAAACAGTATTCGAG
CGCCGATATTGAGGGCGCCGCGAAAGCTGCTGGCATTGTCTTCAATGCAG
GCGATATTGTACTGCTTCGCTCAGGTTATACTCAATATCTGAATGACCCC
GAAATATTCAACCTCTCTGAGCCAGGCCCAGGACTTGATGCTGCCATGTG
TCTTGCGCAAAAGGACCCTCTTATGATTGCTGCCGACACCGTTGGATTAG
AGGTACATGCTCCTGGTCTCTGGACTGATTATCCGGTTCACAACTATCTA
ATGCGTGAGAAAGGAATTTATATTGGCGAGGTGTTCAACTTAGAAGAGCT
TGCACGGGATAAGGTCACACAAGGAACCATAGTTATTTCCATTACTCAGA
TAGCTGGACTTTGCCAAGTGCGGTGCAATCCACTTTGCTTCGTCTAG
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